CX289424

Overview
NameCX289424
Unique NameCX289424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length543
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10381 contig Ccv1_Contig10381:785..1327. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289424 vs. ExPASy Swiss-Prot
Match: TOC33_ARATH (Translocase of chloroplast 33, chloroplastic OS=Arabidopsis thaliana GN=TOC33 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.953e-23
Identity = 52/80 (65.00%), Postives = 63/80 (78.75%), Query Frame = 3
Query:    3 ENDEKILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLILKWIEGAIKSDIAKDKKP 242
            + DEK LPNG AWIP LVK ITDVATN+ K+I VDKK++DGS SDDKGK  IP +IG Q+LI+K I+GAI++DI    KP
Sbjct:  217 DKDEKALPNGEAWIPNLVKAITDVATNQRKAIHVDKKMVDGSYSDDKGKKLIPLIIGAQYLIVKMIQGAIRNDIKTSGKP 296          
BLAST of CX289424 vs. ExPASy Swiss-Prot
Match: TOC34_PEA (Translocase of chloroplast 34 OS=Pisum sativum GN=TOC34 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.918e-19
Identity = 47/81 (58.02%), Postives = 60/81 (74.07%), Query Frame = 3
Query:    3 ENDEKILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLIL-KWIEGAIKSDIAKDKKP 242
            ++DEK+LPNG AWIP LV+ IT+VA NKS+SI VDK LIDG   + +GK+WIP +  LQ+L L K IE  I+ DIA + KP
Sbjct:  219 DSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDGPNPNQRGKLWIPLIFALQYLFLAKPIEALIRRDIATETKP 299          
BLAST of CX289424 vs. ExPASy Swiss-Prot
Match: TOC34_ARATH (Translocase of chloroplast 34, chloroplastic OS=Arabidopsis thaliana GN=TOC34 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 9.714e-15
Identity = 39/85 (45.88%), Postives = 60/85 (70.59%), Query Frame = 3
Query:    3 ENDEKILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQW-LILKWIEGAIKSDIAKDKKPY*EL 254
            E+DEKILP G +WIP L   IT+++ N +K+I VDKKL++G   +++GK  IP +   Q+ L++K +  AIKSD++++ KP  EL
Sbjct:  219 ESDEKILPCGTSWIPNLFNKITEISFNGNKAIHVDKKLVEGPNPNERGKKLIPLMFAFQYLLVMKPLVRAIKSDVSRESKPAWEL 303          
The following BLAST results are available for this feature:
BLAST of CX289424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TOC33_ARATH1.953e-2365.00Translocase of chloroplast 33, chloroplastic OS=Ar... [more]
TOC34_PEA2.918e-1958.02Translocase of chloroplast 34 OS=Pisum sativum GN=... [more]
TOC34_ARATH9.714e-1545.88Translocase of chloroplast 34, chloroplastic OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionC02013A06SK IF1 Citrus clementina cDNA clone C02013A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289424 ID=CX289424; Name=CX289424; organism=Citrus clementina; type=EST; length=543bp
ATGAGAATGATGAGAAGATTCTTCCAAATGGTAATGCGTGGATTCCAACC
TTGGTTAAAGGGATCACAGATGTTGCGACAAATAAGAGCAAATCTATTGT
AGTTGACAAGAAGCTGATTGACGGATCTGGCTCTGATGATAAGGGGAAAA
TGTGGATCCCTGCCGTTATTGGGCTTCAGTGGCTCATCCTGAAATGGATT
GAAGGAGCAATAAAAAGTGATATTGCAAAGGATAAGAAGCCTTACTGAGA
ACTGCATGTATTGATCTCGCCAATTTTCAGTCGTAATCGTCATCTTATGG
TTCTTTATTGAGCTGCTTCTGAATATTTTGTTTATTGTATTTATTAGTTC
TGCATTATGCGGATATTAGTTATAGAGTCTGTAACAGTTCCTATCGGCTA
CGCGCTGAACAAACAGGAAAGCTATAAGTCATTAAGTTGGATGTCAGATA
ATAGAGATTTGTTTGAACCATCTTAGTTTGTGTCAAGATAATTGAAATCT
TTTTTATTTTAAGTTGGAGTTCTCTCAAAAAAAAAAAAAAAAA
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