CX289446

Overview
NameCX289446
Unique NameCX289446
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length487
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15321 contig Ccv1_Contig15321:27..513. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289446 vs. ExPASy Swiss-Prot
Match: R10A3_ARATH (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 1.835e-61
Identity = 118/150 (78.67%), Postives = 127/150 (84.67%), Query Frame = 2
Query:   38 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNE 487
            MSKLQS+A+REAISSI+ + KET  RNFTETIELQIGLKNYDPQKDKRFSGSVKLPH+PRPKMK+CMLGDAQHVEEAEKIGL+ MDVE                  +HAFLASESVIKQIPRLLGPGLNKAGKFPTLV+HQESLESKVNE
Sbjct:    1 MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRPKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNE 150          
BLAST of CX289446 vs. ExPASy Swiss-Prot
Match: R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 3.240e-58
Identity = 116/150 (77.33%), Postives = 124/150 (82.67%), Query Frame = 2
Query:   38 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNE 487
            MSKLQS+A+REAI++I   S E  KRNF ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMK+CMLGDAQHVEEAEK+GL+ MDVE                  YHAFLASESVIKQIPRLLGPGLNKAGKFPTLV+HQESLESKVNE
Sbjct:    1 MSKLQSEAVREAITTITGKS-EAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNE 149          
BLAST of CX289446 vs. ExPASy Swiss-Prot
Match: R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 2.100e-57
Identity = 114/150 (76.00%), Postives = 124/150 (82.67%), Query Frame = 2
Query:   38 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNE 487
            MSKLQS+A+REAI++I   S+E  KRNF ET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMK+CMLGDAQHVEEAEK+GL  MDVE                  YHAFLASESVIKQIPRLLGPGLNKAGKFPTLV+HQESLE+KVNE
Sbjct:    1 MSKLQSEAVREAITTIKGKSEE-KKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNE 149          
BLAST of CX289446 vs. ExPASy Swiss-Prot
Match: RL10A_SPOFR (60S ribosomal protein L10a OS=Spodoptera frugiperda GN=RpL10A PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 5.931e-44
Identity = 88/149 (59.06%), Postives = 110/149 (73.83%), Query Frame = 2
Query:   41 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNE 487
            SK+  D L E +++++Q SK+  KRNF ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPKM+VC+LGD QH +EA+ + +  MD E                  Y AFLASES+IKQIPRLLGPGLNKAGKFP L++HQES+  K++E
Sbjct:    3 SKVSRDTLYECVNAVLQASKD-KKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKSLTVPCMDAEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDE 150          
BLAST of CX289446 vs. ExPASy Swiss-Prot
Match: R10AB_DROME (60S ribosomal protein L10a-2 OS=Drosophila melanogaster GN=RpL10Ab PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 7.747e-44
Identity = 88/149 (59.06%), Postives = 107/149 (71.81%), Query Frame = 2
Query:   41 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNE 487
            SK+  D L E ++ +++ S +  KR F ET+ELQIGLKNYDPQKDKRFSG+VKL HIPRPKMKVC+LGD QH +EA+   +D+MD E                  Y AFLASES+IKQIPRLLGPGLNKAGKFP L++HQES+  K+ E
Sbjct:    3 SKVSRDTLYEGVNGLLEASAK-KKRGFLETVELQIGLKNYDPQKDKRFSGTVKLKHIPRPKMKVCILGDQQHCDEAKANNVDFMDAEALKKLNKNKKLVKKLAKSYDAFLASESLIKQIPRLLGPGLNKAGKFPALLSHQESMIGKIEE 150          
BLAST of CX289446 vs. ExPASy Swiss-Prot
Match: RL10A_NEUCR (60S ribosomal protein L10a OS=Neurospora crassa GN=rpl-10a PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 7.251e-42
Identity = 80/150 (53.33%), Postives = 107/150 (71.33%), Query Frame = 2
Query:   38 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNE 487
            MSK+   A+R+ ++ +++YS ET KRNF ET+ELQIGLKNYDPQ+DKRFSG+++LP IPRP M +C+LGD   ++ A+  G+D M V+                  Y AF+ASE++IKQIPRLLGPGL+KAGKFPT V+H + L  K+NE
Sbjct:    1 MSKISVAAVRQHVTDLLEYSNETKKRNFLETVELQIGLKNYDPQRDKRFSGTIRLPSIPRPNMSICILGDQHDIDRAKHGGVDAMSVDDLKKLNKNKKLIKKLARKYDAFVASEALIKQIPRLLGPGLSKAGKFPTPVSHSDDLTGKLNE 150          
BLAST of CX289446 vs. ExPASy Swiss-Prot
Match: RL10A_XENLA (60S ribosomal protein L10a OS=Xenopus laevis GN=rpl10a PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.110e-41
Identity = 84/149 (56.38%), Postives = 106/149 (71.14%), Query Frame = 2
Query:   41 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNE 487
            SK+  D L EA+  ++Q SK+  KR F ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  +C+LGD QH +EA+ + L +MD+E                  Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E+L +KV+E
Sbjct:    3 SKVSRDTLYEAVREVLQGSKK-KKRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSLCVLGDQQHCDEAKAVDLPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENLVAKVDE 150          
BLAST of CX289446 vs. ExPASy Swiss-Prot
Match: RL1_YEAST (60S ribosomal protein L1 OS=Saccharomyces cerevisiae GN=RPL1A PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.047e-40
Identity = 79/150 (52.67%), Postives = 104/150 (69.33%), Query Frame = 2
Query:   38 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNE 487
            MSK+ S  +RE +  +++YS ET KRNF ET+ELQ+GLKNYDPQ+DKRFSGS+KLP+ PRP M +C+ GDA  V+ A+  G+D M V+                  Y+AF+ASE +IKQ+PRLLGP L+KAGKFPT V+H + L  KV +
Sbjct:    1 MSKITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPRPNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYGKVTD 150          
BLAST of CX289446 vs. ExPASy Swiss-Prot
Match: RL10A_DANRE (60S ribosomal protein L10a OS=Danio rerio GN=rpl10a PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.367e-40
Identity = 85/150 (56.67%), Postives = 102/150 (68.00%), Query Frame = 2
Query:   38 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNE 487
            MSK+  D L EA+   VQ      KR F ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  VC+LGD QH +EA+   L +MD+E                  Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E+L +KV+E
Sbjct:    1 MSKVSRDTLYEAVKE-VQAGSRRKKRKFLETVELQISLKNYDPQKDKRFSGTVRLKTTPRPKFSVCVLGDQQHCDEAKAAELPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENLGTKVDE 149          
BLAST of CX289446 vs. ExPASy Swiss-Prot
Match: RL10A_CAEEL (60S ribosomal protein L10a OS=Caenorhabditis elegans GN=rpl-10a PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.786e-40
Identity = 84/150 (56.00%), Postives = 105/150 (70.00%), Query Frame = 2
Query:   38 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNE 487
            MSK+  ++L EAI+ +++ S E   R F ETIELQIGLKNYDPQKDKRFSGS++L HIPRP MKVC+ GD  H++EA    +  M  +                  Y AF+ASES+IKQIPR+LGPGLNKAGKFP++VTH ESL+SK +E
Sbjct:    1 MSKVSRESLNEAIAEVLKGSSE-KPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDE 149          
The following BLAST results are available for this feature:
BLAST of CX289446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
R10A3_ARATH1.835e-6178.6760S ribosomal protein L10a-3 OS=Arabidopsis thalia... [more]
R10A1_ARATH3.240e-5877.3360S ribosomal protein L10a-1 OS=Arabidopsis thalia... [more]
R10A2_ARATH2.100e-5776.0060S ribosomal protein L10a-2 OS=Arabidopsis thalia... [more]
RL10A_SPOFR5.931e-4459.0660S ribosomal protein L10a OS=Spodoptera frugiperd... [more]
R10AB_DROME7.747e-4459.0660S ribosomal protein L10a-2 OS=Drosophila melanog... [more]
RL10A_NEUCR7.251e-4253.3360S ribosomal protein L10a OS=Neurospora crassa GN... [more]
RL10A_XENLA2.110e-4156.3860S ribosomal protein L10a OS=Xenopus laevis GN=rp... [more]
RL1_YEAST1.047e-4052.6760S ribosomal protein L1 OS=Saccharomyces cerevisi... [more]
RL10A_DANRE1.367e-4056.6760S ribosomal protein L10a OS=Danio rerio GN=rpl10... [more]
RL10A_CAEEL1.786e-4056.0060S ribosomal protein L10a OS=Caenorhabditis elega... [more]

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Properties
Property NameValue
Genbank descriptionC02013C10SK IF1 Citrus clementina cDNA clone C02013C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289446 ID=CX289446; Name=CX289446; organism=Citrus clementina; type=EST; length=487bp
AAAAAAAAATCTGTAAAGGACTCCAAGCGCTTCAATCATGAGCAAGCTTC
AGAGTGATGCACTGAGAGAGGCCATCTCTAGTATTGTGCAATACTCTAAG
GAGACAAATAAGAGGAACTTCACCGAGACTATTGAGCTTCAGATTGGTCT
CAAGAACTATGATCCACAAAAGGACAAGCGTTTCAGTGGCTCTGTTAAGT
TGCCTCACATTCCCCGCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCT
CAACATGTTGAAGAGGCCGAGAAGATTGGTTTGGACTACATGGATGTTGA
AGGATTGAAAAAATTGAACAAGAACAAGAAATTGGTGAAGAAACTTGCCA
AGAAATATCATGCTTTCTTGGCATCAGAGTCTGTCATCAAGCAGATTCCT
CGTTTGTTGGGTCCTGGTCTCAACAAGGCAGGAAAGTTCCCTACCCTTGT
TACTCACCAAGAATCCCTGGAGTCCAAAGTCAACGAG
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