CX289446
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX289446 vs. ExPASy Swiss-Prot
Match: R10A3_ARATH (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=2 SV=1) HSP 1 Score: 234.572 bits (597), Expect = 1.835e-61 Identity = 118/150 (78.67%), Postives = 127/150 (84.67%), Query Frame = 2 Query: 38 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNE 487 MSKLQS+A+REAISSI+ + KET RNFTETIELQIGLKNYDPQKDKRFSGSVKLPH+PRPKMK+CMLGDAQHVEEAEKIGL+ MDVE +HAFLASESVIKQIPRLLGPGLNKAGKFPTLV+HQESLESKVNE Sbjct: 1 MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRPKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNE 150
BLAST of CX289446 vs. ExPASy Swiss-Prot
Match: R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=2 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 3.240e-58 Identity = 116/150 (77.33%), Postives = 124/150 (82.67%), Query Frame = 2 Query: 38 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNE 487 MSKLQS+A+REAI++I S E KRNF ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMK+CMLGDAQHVEEAEK+GL+ MDVE YHAFLASESVIKQIPRLLGPGLNKAGKFPTLV+HQESLESKVNE Sbjct: 1 MSKLQSEAVREAITTITGKS-EAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNE 149
BLAST of CX289446 vs. ExPASy Swiss-Prot
Match: R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=2 SV=1) HSP 1 Score: 221.09 bits (562), Expect = 2.100e-57 Identity = 114/150 (76.00%), Postives = 124/150 (82.67%), Query Frame = 2 Query: 38 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNE 487 MSKLQS+A+REAI++I S+E KRNF ET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMK+CMLGDAQHVEEAEK+GL MDVE YHAFLASESVIKQIPRLLGPGLNKAGKFPTLV+HQESLE+KVNE Sbjct: 1 MSKLQSEAVREAITTIKGKSEE-KKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNE 149
BLAST of CX289446 vs. ExPASy Swiss-Prot
Match: RL10A_SPOFR (60S ribosomal protein L10a OS=Spodoptera frugiperda GN=RpL10A PE=2 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 5.931e-44 Identity = 88/149 (59.06%), Postives = 110/149 (73.83%), Query Frame = 2 Query: 41 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNE 487 SK+ D L E +++++Q SK+ KRNF ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPKM+VC+LGD QH +EA+ + + MD E Y AFLASES+IKQIPRLLGPGLNKAGKFP L++HQES+ K++E Sbjct: 3 SKVSRDTLYECVNAVLQASKD-KKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKSLTVPCMDAEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDE 150
BLAST of CX289446 vs. ExPASy Swiss-Prot
Match: R10AB_DROME (60S ribosomal protein L10a-2 OS=Drosophila melanogaster GN=RpL10Ab PE=1 SV=2) HSP 1 Score: 176.022 bits (445), Expect = 7.747e-44 Identity = 88/149 (59.06%), Postives = 107/149 (71.81%), Query Frame = 2 Query: 41 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNE 487 SK+ D L E ++ +++ S + KR F ET+ELQIGLKNYDPQKDKRFSG+VKL HIPRPKMKVC+LGD QH +EA+ +D+MD E Y AFLASES+IKQIPRLLGPGLNKAGKFP L++HQES+ K+ E Sbjct: 3 SKVSRDTLYEGVNGLLEASAK-KKRGFLETVELQIGLKNYDPQKDKRFSGTVKLKHIPRPKMKVCILGDQQHCDEAKANNVDFMDAEALKKLNKNKKLVKKLAKSYDAFLASESLIKQIPRLLGPGLNKAGKFPALLSHQESMIGKIEE 150
BLAST of CX289446 vs. ExPASy Swiss-Prot
Match: RL10A_NEUCR (60S ribosomal protein L10a OS=Neurospora crassa GN=rpl-10a PE=3 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 7.251e-42 Identity = 80/150 (53.33%), Postives = 107/150 (71.33%), Query Frame = 2 Query: 38 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNE 487 MSK+ A+R+ ++ +++YS ET KRNF ET+ELQIGLKNYDPQ+DKRFSG+++LP IPRP M +C+LGD ++ A+ G+D M V+ Y AF+ASE++IKQIPRLLGPGL+KAGKFPT V+H + L K+NE Sbjct: 1 MSKISVAAVRQHVTDLLEYSNETKKRNFLETVELQIGLKNYDPQRDKRFSGTIRLPSIPRPNMSICILGDQHDIDRAKHGGVDAMSVDDLKKLNKNKKLIKKLARKYDAFVASEALIKQIPRLLGPGLSKAGKFPTPVSHSDDLTGKLNE 150
BLAST of CX289446 vs. ExPASy Swiss-Prot
Match: RL10A_XENLA (60S ribosomal protein L10a OS=Xenopus laevis GN=rpl10a PE=2 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 2.110e-41 Identity = 84/149 (56.38%), Postives = 106/149 (71.14%), Query Frame = 2 Query: 41 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNE 487 SK+ D L EA+ ++Q SK+ KR F ET+ELQI LKNYDPQKDKRFSG+V+L PRPK +C+LGD QH +EA+ + L +MD+E Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E+L +KV+E Sbjct: 3 SKVSRDTLYEAVREVLQGSKK-KKRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSLCVLGDQQHCDEAKAVDLPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENLVAKVDE 150
BLAST of CX289446 vs. ExPASy Swiss-Prot
Match: RL1_YEAST (60S ribosomal protein L1 OS=Saccharomyces cerevisiae GN=RPL1A PE=1 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 1.047e-40 Identity = 79/150 (52.67%), Postives = 104/150 (69.33%), Query Frame = 2 Query: 38 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNE 487 MSK+ S +RE + +++YS ET KRNF ET+ELQ+GLKNYDPQ+DKRFSGS+KLP+ PRP M +C+ GDA V+ A+ G+D M V+ Y+AF+ASE +IKQ+PRLLGP L+KAGKFPT V+H + L KV + Sbjct: 1 MSKITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPRPNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYGKVTD 150
BLAST of CX289446 vs. ExPASy Swiss-Prot
Match: RL10A_DANRE (60S ribosomal protein L10a OS=Danio rerio GN=rpl10a PE=2 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 1.367e-40 Identity = 85/150 (56.67%), Postives = 102/150 (68.00%), Query Frame = 2 Query: 38 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNE 487 MSK+ D L EA+ VQ KR F ET+ELQI LKNYDPQKDKRFSG+V+L PRPK VC+LGD QH +EA+ L +MD+E Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E+L +KV+E Sbjct: 1 MSKVSRDTLYEAVKE-VQAGSRRKKRKFLETVELQISLKNYDPQKDKRFSGTVRLKTTPRPKFSVCVLGDQQHCDEAKAAELPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENLGTKVDE 149
BLAST of CX289446 vs. ExPASy Swiss-Prot
Match: RL10A_CAEEL (60S ribosomal protein L10a OS=Caenorhabditis elegans GN=rpl-10a PE=1 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 1.786e-40 Identity = 84/150 (56.00%), Postives = 105/150 (70.00%), Query Frame = 2 Query: 38 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNE 487 MSK+ ++L EAI+ +++ S E R F ETIELQIGLKNYDPQKDKRFSGS++L HIPRP MKVC+ GD H++EA + M + Y AF+ASES+IKQIPR+LGPGLNKAGKFP++VTH ESL+SK +E Sbjct: 1 MSKVSRESLNEAIAEVLKGSSE-KPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDE 149 The following BLAST results are available for this feature:
BLAST of CX289446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
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Sequences
The
following sequences are available for this feature:
EST sequence >CX289446 ID=CX289446; Name=CX289446; organism=Citrus clementina; type=EST; length=487bpback to top |