CX289447

Overview
NameCX289447
Unique NameCX289447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289447 vs. ExPASy Swiss-Prot
Match: FACR3_ARATH (Fatty acyl-CoA reductase 3 OS=Arabidopsis thaliana GN=FAR3 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.156e-44
Identity = 87/159 (54.72%), Postives = 115/159 (72.33%), Query Frame = 2
Query:    2 DLFRVLRDTWGDSLDSFILEKVAAVPGDILYEDLGIKDSNLKEEMYRQIDLVVNVAAITKFDERYDALLDTNTMGAFHVLSFAKHCTKIQMLVHLSTAYACGEKSGLIPENSFTMGEMVKWPRKLDIMAEKKLVEKKLNQLQTTGAAEDEVTSIMKDLG 478
            DLF+VL++ +G +L+    EK+  V GDI  EDLG++D +L  EM  Q+D +VN+AA TKFDERYD  L  NT+GA +VL+FAK C K+++LVH+STAY CGEKSGLI E  + MGE +     LDI  EKKLV++KL+QL+  GAA + +T  MKDLG
Sbjct:   70 DLFKVLKEKYGPNLNQLTSEKITIVDGDICLEDLGLQDFDLAHEMIHQVDAIVNLAATTKFDERYDVALGINTLGALNVLNFAKRCAKVKILVHVSTAYVCGEKSGLIMETPYRMGETLNGTTGLDINYEKKLVQEKLDQLRVIGAAPETITETMKDLG 228          
BLAST of CX289447 vs. ExPASy Swiss-Prot
Match: FACR4_ARATH (Probable fatty acyl-CoA reductase 4 OS=Arabidopsis thaliana GN=FAR4 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.012e-40
Identity = 84/160 (52.50%), Postives = 115/160 (71.88%), Query Frame = 2
Query:    2 DLFRVLRDTWGD-SLDSFILEKVAAVPGDILYEDLGIKDSNLKEEMYRQIDLVVNVAAITKFDERYDALLDTNTMGAFHVLSFAKHCTKIQMLVHLSTAYACGEKSGLIPENSFTMGEMVKWPRKLDIMAEKKLVEKKLNQLQTTGAAEDEVTSIMKDLG 478
            DLFRVL++  GD +L +FI EKV  +PGDI  ++LG+K S+L + M+ +ID++VNVAA T FDERYD  L  NT G  +VL+FAK C K Q+L+H+STAY  GEKSGL+ E +F MGE +   RKL I  E +L+++KL +LQ    +E+E++  MKDLG
Sbjct:   65 DLFRVLKNALGDENLKAFITEKVVPIPGDISVDNLGVKGSDLLQHMWNEIDIIVNVAATTNFDERYDVGLSVNTFGPLNVLNFAKKCVKGQLLLHVSTAYVRGEKSGLLHEKTFHMGETLNGHRKLVIETEMELMKQKLKELQKQNCSEEEISQSMKDLG 224          
BLAST of CX289447 vs. ExPASy Swiss-Prot
Match: FACR8_ARATH (Fatty acyl-CoA reductase 8 OS=Arabidopsis thaliana GN=FAR8 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 6.562e-40
Identity = 85/161 (52.80%), Postives = 114/161 (70.81%), Query Frame = 2
Query:    2 DLFRVLRDTWGDS-LDSFILEKVAAVPGDILYEDLGIKDSNLKEEMYRQIDLVVNVAAITKFDERYDALLDTNTMGAFHVLSFAKHCTKIQMLVHLSTAYACGEKSGLIPENSFTMGEMV-KWPRKLDIMAEKKLVEKKLNQLQTTGAAEDEVTSIMKDLG 478
            DLF+VLRD  GD  L++ + EKV  V GDI  + LG+KDSNL+E M ++ID+VVNVAA T FDERYD  L  NT GA +VL+FAK C K Q+L+H+STAY CGEK GL+PE  F M E+  +   +LDI  E++L++++L +L   G +E+  T  MK+LG
Sbjct:   65 DLFKVLRDNLGDEKLNTLLSEKVVPVAGDIAMDHLGMKDSNLRERMQKEIDIVVNVAATTNFDERYDIGLGINTFGALNVLNFAKKCVKAQLLLHVSTAYVCGEKPGLLPEKPFVMEEICNENGLQLDINLERELMKQRLKELNEQGCSEEGTTFYMKELG 225          
BLAST of CX289447 vs. ExPASy Swiss-Prot
Match: FACR5_ARATH (Probable fatty acyl-CoA reductase 5 OS=Arabidopsis thaliana GN=FAR5 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.462e-39
Identity = 83/161 (51.55%), Postives = 116/161 (72.05%), Query Frame = 2
Query:    2 DLFRVLRDTWGDS-LDSFILEKVAAVPGDILYEDLGIKDSNLKEEMYRQIDLVVNVAAITKFDERYDALLDTNTMGAFHVLSFAKHCTKIQMLVHLSTAYACGEKSGLIPENSFTMGEM-VKWPRKLDIMAEKKLVEKKLNQLQTTGAAEDEVTSIMKDLG 478
            +LF+VLR   GD  L++ + EKV +VPGDI  + LGI DS+L+E M ++ID+VVNVAA T FDERYD  L  NT GA +VL+FAK C K+Q+L+H+STAY CGEK GLIPE  F M E+  +   +LDI  E++L++++L +L     +E+++T  MK+LG
Sbjct:   65 ELFKVLRQNLGDEKLNTLLYEKVVSVPGDIATDQLGINDSHLRERMQKEIDIVVNVAATTNFDERYDVGLGINTFGALNVLNFAKKCVKVQLLLHVSTAYVCGEKPGLIPEKPFIMEEIRNENGLQLDINLERELMKQRLKELNEQDCSEEDITLSMKELG 225          
BLAST of CX289447 vs. ExPASy Swiss-Prot
Match: FACR1_ARATH (Fatty acyl-CoA reductase 1 OS=Arabidopsis thaliana GN=FAR1 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 5.199e-37
Identity = 77/160 (48.12%), Postives = 114/160 (71.25%), Query Frame = 2
Query:    2 DLFRVLRDTWG-DSLDSFILEKVAAVPGDILYEDLGIKDSNLKEEMYRQIDLVVNVAAITKFDERYDALLDTNTMGAFHVLSFAKHCTKIQMLVHLSTAYACGEKSGLIPENSFTMGEMVKWPRKLDIMAEKKLVEKKLNQLQTTGAAEDEVTSIMKDLG 478
            DLF+VLR+  G D+L++ + EK+  VPGDI  ++LG+KD++L + M+ +ID+++N+AA T FDERYD  L  NT GA +VL+FAK C K Q+L+H+STAY  GE+ GL+ E  F MGE +   R+LDI  E  L+++KL +LQ    +++E++  MKD G
Sbjct:   65 DLFKVLRNNLGEDNLNALMREKIVPVPGDISIDNLGLKDTDLIQRMWSEIDIIINIAATTNFDERYDIGLGINTFGALNVLNFAKKCVKGQLLLHVSTAYISGEQPGLLLEKPFKMGETLSGDRELDINIEHDLMKQKLKELQ--DCSDEEISQTMKDFG 222          
BLAST of CX289447 vs. ExPASy Swiss-Prot
Match: FACR2_ARATH (Fatty acyl-CoA reductase 2 OS=Arabidopsis thaliana GN=FAR2 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.052e-21
Identity = 58/166 (34.94%), Postives = 96/166 (57.83%), Query Frame = 2
Query:    2 DLFRVLRDTWGDSLDSFILEKVAAVPGDILYEDLGIKDSNLKEEMYRQIDLVVNVAAITKFDERYDALLDTNTMGAFHVLSFAKHCTKIQMLVHLSTAYACGEKSGLIPENSFTMGEMVKWP-------RKLDIMAEKKLVEKKLNQLQTTGAAEDEVTSIMKDLG 478
            +LF  L++T G S  SF+L K+  V G+I   ++G++ ++  EE+ +++D+++N AA T F+ERYD  LD NT G  +++ FAK C K+++ + +STAY  G++ G I E  F+MG+ +          + LD+  E KL  +   +    G    +    MKDLG
Sbjct:  184 ELFNTLKETHGASYMSFMLTKLIPVTGNICDSNIGLQ-ADSAEEIAKEVDVIINSAANTTFNERYDVALDINTRGPGNLMGFAKKCKKLKLFLQVSTAYVNGQRQGRIMEKPFSMGDCIATENFLEGNRKALDVDREMKLALEAARK----GTQNQDEAQKMKDLG 344          
BLAST of CX289447 vs. ExPASy Swiss-Prot
Match: FACR7_ARATH (Putative fatty acyl-CoA reductase 7 OS=Arabidopsis thaliana GN=FAR7 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.386e-20
Identity = 46/113 (40.71%), Postives = 69/113 (61.06%), Query Frame = 2
Query:  140 RQIDLVVNVAAITKFDERYDALLDTNTMGAFHVLSFAKHCTKIQMLVHLSTAYACGEKSGLIPENSFTMGEMVKWPRKLDIMAEKKLVEKKLNQLQTTGAAEDEVTSIMKDLG 478
            +++ L+V  +     ++RYD  L  NT GA +VL+FAK C K ++L+H+ST Y CGE+ G I E  F MGE +    K+DI  E++L ++K  Q +  G +E+E    MKD G
Sbjct:   39 KRLYLLVRASDKKSAEQRYDVALGINTFGAINVLNFAKKCVKPKLLLHVSTVYVCGERPGHIVEKHFAMGESLNGKNKVDINTERRLADQKSKQFKEQGCSEEETEQAMKDFG 151          
BLAST of CX289447 vs. ExPASy Swiss-Prot
Match: FACR6_ARATH (Fatty acyl-CoA reductase 6, chloroplastic OS=Arabidopsis thaliana GN=FAR6 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.287e-19
Identity = 53/159 (33.33%), Postives = 92/159 (57.86%), Query Frame = 2
Query:    2 DLFRVLRDTWGDSLDSFILEKVAAVPGDILYEDLGIKDSNLKEEMYRQIDLVVNVAAITKFDERYDALLDTNTMGAFHVLSFAKHCTKIQMLVHLSTAYACGEKSGLIPENSFTMGEMVKWPRKLDIMAEKKLVEKKLNQLQTTGAAEDEVTSIMKDLG 478
            DLF++L+   G S ++F+  K+  V GDI  ++LGIK S +   +  +ID++++    T FD+RYD+ L  N +G   +LSF K C K+++ +H STAY  G++ G + E    +GE +     L+I +E KL  + + + +      +E+   +K+LG
Sbjct:  137 DLFKLLKQMHGSSYEAFMKRKLIPVIGDIEEDNLGIK-SEIANMISEEIDVIISCGGRTTFDDRYDSALSVNALGPGRLLSFGKGCRKLKLFLHFSTAYVTGKREGTVLETPLCIGENI--TSDLNIKSELKLASEAVRKFR----GREEIKK-LKELG 287          
The following BLAST results are available for this feature:
BLAST of CX289447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
FACR3_ARATH1.156e-4454.72Fatty acyl-CoA reductase 3 OS=Arabidopsis thaliana... [more]
FACR4_ARATH1.012e-4052.50Probable fatty acyl-CoA reductase 4 OS=Arabidopsis... [more]
FACR8_ARATH6.562e-4052.80Fatty acyl-CoA reductase 8 OS=Arabidopsis thaliana... [more]
FACR5_ARATH1.462e-3951.55Probable fatty acyl-CoA reductase 5 OS=Arabidopsis... [more]
FACR1_ARATH5.199e-3748.13Fatty acyl-CoA reductase 1 OS=Arabidopsis thaliana... [more]
FACR2_ARATH1.052e-2134.94Fatty acyl-CoA reductase 2 OS=Arabidopsis thaliana... [more]
FACR7_ARATH3.386e-2040.71Putative fatty acyl-CoA reductase 7 OS=Arabidopsis... [more]
FACR6_ARATH1.287e-1933.33Fatty acyl-CoA reductase 6, chloroplastic OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionC02013C11SK IF1 Citrus clementina cDNA clone C02013C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289447 ID=CX289447; Name=CX289447; organism=Citrus clementina; type=EST; length=480bp
GGACTTGTTTAGGGTGCTGAGGGATACATGGGGTGACAGTTTGGACTCCT
TCATACTGGAAAAGGTAGCTGCAGTGCCTGGTGATATTTTGTATGAGGAC
TTGGGAATCAAAGACTCTAATTTAAAGGAAGAAATGTACAGACAAATAGA
CTTGGTGGTAAATGTAGCTGCTATAACAAAATTTGATGAAAGATATGATG
CTTTATTGGACACCAATACAATGGGAGCTTTCCACGTTTTGAGTTTTGCA
AAACATTGTACAAAAATACAGATGCTTGTCCACCTGTCAACTGCTTATGC
GTGCGGCGAAAAGTCGGGACTAATTCCTGAGAATTCATTTACAATGGGTG
AGATGGTGAAATGGCCACGTAAATTGGATATCATGGCAGAAAAGAAACTA
GTGGAGAAAAAATTAAATCAACTTCAAACAACTGGTGCAGCTGAAGACGA
AGTCACATCAATCATGAAGGATCTCGGCAC
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