CX289448

Overview
NameCX289448
Unique NameCX289448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length521
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX289448 vs. ExPASy Swiss-Prot
Match: FKB22_ARATH (FK506-binding protein 2-2 OS=Arabidopsis thaliana GN=FKBP15-2 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.018e-18
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 2 
Query:    2 CVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTVNGKPASGEK 148
            CVGEKRKLKIPAKLGYG QGSPPTIPGGATLIFDTEL+ VN KPA GE+
Sbjct:  100 CVGEKRKLKIPAKLGYGEQGSPPTIPGGATLIFDTELIAVNEKPAGGEE 148
[Close]
BLAST of CX289448 vs. ExPASy Swiss-Prot
Match: FKB15_VICFA (FK506-binding protein 2 OS=Vicia faba GN=FKBP15 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.586e-17
Identity = 42/50 (84.00%), Postives = 44/50 (88.00%), Query Frame = 2 
Query:    2 CVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTVNGKPASGEKT 151
            C+GEKRKLKIPAKLGYG QGSPPTIPGGATLIFDTELV VN K  S EK+
Sbjct:   97 CLGEKRKLKIPAKLGYGEQGSPPTIPGGATLIFDTELVGVNDKSLSEEKS 146
[Close]
BLAST of CX289448 vs. ExPASy Swiss-Prot
Match: FKB21_ARATH (FK506-binding protein 2-1 OS=Arabidopsis thaliana GN=FKBP15-1 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.244e-16
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 2 
Query:    2 CVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTVNGKPASGEKT 151
            CVGEKRKLKIP+KLGYG  GSPP IPGGATLIFDTELV VNG+P+S  K+
Sbjct:  100 CVGEKRKLKIPSKLGYGDNGSPPKIPGGATLIFDTELVAVNGEPSSEAKS 149
The following BLAST results are available for this feature:
BLAST of CX289448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FKB22_ARATH1.018e-1887.76FK506-binding protein 2-2 OS=Arabidopsis thaliana ... [more]
FKB15_VICFA5.586e-1784.00FK506-binding protein 2 OS=Vicia faba GN=FKBP15 PE... [more]
FKB21_ARATH1.244e-1680.00FK506-binding protein 2-1 OS=Arabidopsis thaliana ... [more]
back to top
Properties
Property NameValue
Genbank descriptionC02013D01SK IF1 Citrus clementina cDNA clone C02013D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289448 ID=CX289448; Name=CX289448; organism=Citrus clementina; type=EST; length=521bp
GTGCGTCGGTGAGAAGCGAAAGTTGAAAATTCCTGCAAAGCTTGGTTATG
GGGCCCAGGGTTCTCCCCCTACCATCCCAGGTGGAGCAACATTGATCTTT
GACACCGAGCTTGTAACAGTAAATGGGAAACCAGCAAGCGGAGAGAAAAC
TGAAGATGAGCTATGATTACCTCTCGATTGAGCAGATTTACCTAAGTCAT
TCCTGTTGCTTTTAATGTATCGGCATAAACCAGGTTTCATAGGCCAGAAT
AATTTATCTATTTAGTGACCTACAGCTGAACAATTTTTGTTGTTTGGATC
AGAAGAAATCTTTTTAAGGGGACAAAATATTAATCTCTGAATATTCGGAA
GGTTGGTTGCCTCACACATATATATGTGCGTCTCTTAAGTGATGTGAACA
TAGCATTATTAGATTTTTCGCAGATCTCCCACTACCCTGACATGTAGTAT
GGATCTTTCTGGTCTCTGATCATATCACCTTTAGTGTGACTGTGACATAG
TAACATTTCCCCTTTTGAATG
back to top