CX289456

Overview
NameCX289456
Unique NameCX289456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length323
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX289456 vs. ExPASy Swiss-Prot
Match: APL_ARATH (Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.897e-19
Identity = 47/110 (42.73%), Postives = 74/110 (67.27%), Query Frame = 2 
Query:    2 ELHEAFVEAVNRLGGGERATPKGVLKLMNGENLTIYHVKSHLQKYRTAR--HRPESSEGT-S*KKSNPTEDMKSLDTKTTMSITEALRLQMEGQKRLHEQLEIQRNLQLR 322
            ELHE FV+AV +LGG ++ATPK ++++M  + LT+YH+KSHLQK+R  +  H+      T    +++  +  +++ + + M       +QME Q+RLHEQLE+QR+LQLR
Sbjct:   42 ELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNEMQMEVQRRLHEQLEVQRHLQLR 151
The following BLAST results are available for this feature:
BLAST of CX289456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
APL_ARATH9.897e-1942.73Myb family transcription factor APL OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionC02013D11SK IF1 Citrus clementina cDNA clone C02013D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289456 ID=CX289456; Name=CX289456; organism=Citrus clementina; type=EST; length=323bp
AGAACTTCATGAGGCATTTGTGGAGGCTGTCAATCGGCTGGGTGGCGGTG
AACGAGCTACTCCAAAAGGTGTCTTAAAGCTCATGAATGGTGAAAATCTG
ACCATTTATCATGTTAAAAGCCACCTCCAGAAATATAGAACAGCTAGACA
CAGACCAGAGTCTTCAGAAGGAACATCATAGAAAAAATCGAATCCTACCG
AAGATATGAAATCTCTGGACACGAAAACGACTATGAGCATCACTGAAGCA
TTGCGATTGCAGATGGAAGGTCAAAAGCGACTTCATGAACAACTTGAGAT
TCAGAGAAATTTGCAGTTGCGTA
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