CX289476

Overview
NameCX289476
Unique NameCX289476
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length539
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289476 vs. ExPASy Swiss-Prot
Match: SENP8_RAT (Sentrin-specific protease 8 OS=Rattus norvegicus GN=Senp8 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.206e-25
Identity = 65/171 (38.01%), Postives = 96/171 (56.14%), Query Frame = 2
Query:    2 VLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLV---SQDILLVPPSIAFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVD--SPQQTNGYDCGVYVIAIARAIC 499
            +LR+SD+ +L  P +LND II F F Y +S      S  +  + P +  +I        +  F+EPL LP K++V   +NDN +   A GG+HWSL+VY ++ N F H+DS+ R N I A+++   +  F+G     S G  L  V+  +P Q N YDCG+YVI    A+C
Sbjct:   12 LLRQSDVSLLDPPNWLNDHIIGFAFEYFASSQFHDCSDHVCFISPEVTQFIKCTSSPAEIAMFLEPLDLPHKRVVFLAINDNSNQ--AAGGTHWSLLVYLQDKNSFFHYDSHSRSNSIHAKQVAEKLKAFLG-----SKGDKLVFVEEKAPAQQNSYDCGMYVICNTEALC 175          
BLAST of CX289476 vs. ExPASy Swiss-Prot
Match: SENP8_MOUSE (Sentrin-specific protease 8 OS=Mus musculus GN=Senp8 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 2.686e-25
Identity = 64/171 (37.43%), Postives = 96/171 (56.14%), Query Frame = 2
Query:    2 VLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLV---SQDILLVPPSIAFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVD--SPQQTNGYDCGVYVIAIARAIC 499
            +LR+SD+ +L  P +LND II F F Y ++      S  +  + P +  +I        +  F+EPL LP K++V   +NDN +   A GG+HWSL+VY ++ N F H+DS+ R N I A+++   +  F+G     S G  L  V+  +P Q N YDCG+YVI    A+C
Sbjct:   12 LLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSDHVCFISPEVTQFIKCTSSPAEIAMFLEPLDLPHKRVVFLAINDNSNQ--AAGGTHWSLLVYLQDKNSFFHYDSHSRSNSIHAKQVAEKLKAFLG-----SKGDKLVFVEEKAPAQENSYDCGMYVICNTEALC 175          
BLAST of CX289476 vs. ExPASy Swiss-Prot
Match: SENP8_HUMAN (Sentrin-specific protease 8 OS=Homo sapiens GN=SENP8 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.021e-24
Identity = 62/171 (36.26%), Postives = 96/171 (56.14%), Query Frame = 2
Query:    2 VLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLV---SQDILLVPPSIAFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVD--SPQQTNGYDCGVYVIAIARAIC 499
            +LR+SD+ +L  P +LND II F F Y ++      S  +  + P +  +I    +   +  F+EPL LP K++V   +NDN +   A GG+HWSL+VY ++ N F H+DS+ R N + A+++   +  F+G       G  L  V+  +P Q N YDCG+YVI    A+C
Sbjct:   12 LLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSDHVSFISPEVTQFIKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQ--AAGGTHWSLLVYLQDKNSFFHYDSHSRSNSVHAKQVAEKLEAFLG-----RKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALC 175          
BLAST of CX289476 vs. ExPASy Swiss-Prot
Match: SENP8_DICDI (Probable sentrin-specific protease 8 OS=Dictyostelium discoideum GN=senp8 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.202e-19
Identity = 54/166 (32.53%), Postives = 92/166 (55.42%), Query Frame = 2
Query:   11 RSDLDILSGPYFLNDRIIEFYFSYL------SSCLVSQDILLVPPSIAFWILNCPDATYLK-EFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGK-YLDCVDSPQQTNGYDCGVYVIAI 484
            +SD++IL    +LND II FY  +L      +   +   +LL+ PS+ F          ++  F +PL L  K+++ FP+ +N D ++  GG+HWSL+++ ++ N F+++DS +  N   A  + S     +      +N K +L    +PQQ NGYDCG+YV++I
Sbjct:   16 QSDINILKSNQWLNDSIISFYLEWLKDGGEDNKNKIPNQVLLLSPSVVFCCSFVESEQEIQLMFEQPLSLKTKEVIFFPLTNNRDPNVIGGGTHWSLLIFIKSLNKFIYYDSINSFNSSDAIFIISKFKFLLSSPPPKTNLKEFLINQKTPQQQNGYDCGLYVLSI 181          
The following BLAST results are available for this feature:
BLAST of CX289476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SENP8_RAT1.206e-2538.01Sentrin-specific protease 8 OS=Rattus norvegicus G... [more]
SENP8_MOUSE2.686e-2537.43Sentrin-specific protease 8 OS=Mus musculus GN=Sen... [more]
SENP8_HUMAN1.021e-2436.26Sentrin-specific protease 8 OS=Homo sapiens GN=SEN... [more]
SENP8_DICDI2.202e-1932.53Probable sentrin-specific protease 8 OS=Dictyostel... [more]
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Properties
Property NameValue
Genbank descriptionC02013F12SK IF1 Citrus clementina cDNA clone C02013F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289476 ID=CX289476; Name=CX289476; organism=Citrus clementina; type=EST; length=539bp
TGTTCTTAGGAGATCAGATTTGGACATCCTGAGTGGCCCATATTTTCTGA
ATGACAGAATCATCGAGTTTTATTTTAGCTATCTTTCATCATGCCTTGTT
TCACAAGACATCCTACTGGTTCCGCCTTCAATTGCTTTCTGGATATTAAA
TTGCCCAGATGCTACATATCTGAAGGAGTTCATAGAACCGCTTAAATTGC
CGGAGAAGAAACTGGTGATCTTTCCTGTTAATGACAATGATGACATGAGT
CTTGCTGAAGGGGGAAGTCACTGGAGCTTAATTGTGTATGAGAGAAATGG
TAATGTGTTTGTGCATCATGATAGCAATCACAGGATGAATAAAATAAAAG
CAAGAAAACTTTTTTCAGCTGTGGTGGGATTTATGGGTGATTCAACTTCA
GCATCTAACGGCAAGTATTTGGATTGTGTTGATTCACCACAACAAACCAA
TGGTTATGATTGTGGAGTATATGTTATTGCCATTGCAAGAGCTATATGTT
GCTGGTATGAGAGTAGTGAACACAAAGATGCCGAGGGTA
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