CX289498

Overview
NameCX289498
Unique NameCX289498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length390
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14369 contig Ccv1_Contig14369:279..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289498 vs. ExPASy Swiss-Prot
Match: COBRA_ARATH (Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 5.430e-70
Identity = 114/130 (87.69%), Postives = 124/130 (95.38%), Query Frame = 1
Query:    1 IKWDIMSWTPDGYVAVVTIFNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTEQGDCSKYKGNIPHCCKKDPTVVDLLPGTPYNQQIENCCKGGVISSWAQDPTTALSSFQLSVGAAGTTNKTVRVPK 390
            +KWD+MSWTPDGYVAVVT+FNFQ+YRHIQ+PGWTLGW WAKKEVIWSM+G QTTEQGDCSKYKGNIPHCCKKDPTVVDLLPGTPYNQQI NCCKGGV++SW QDP TA SSFQ+SVGAAGTTNKTVRVP+
Sbjct:   48 MKWDVMSWTPDGYVAVVTMFNFQKYRHIQSPGWTLGWKWAKKEVIWSMVGAQTTEQGDCSKYKGNIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVMNSWVQDPATAASSFQISVGAAGTTNKTVRVPR 177          
BLAST of CX289498 vs. ExPASy Swiss-Prot
Match: COBL2_ARATH (COBRA-like protein 2 OS=Arabidopsis thaliana GN=COBL2 PE=1 SV=2)

HSP 1 Score: 249.595 bits (636), Expect = 3.642e-66
Identity = 108/130 (83.08%), Postives = 119/130 (91.54%), Query Frame = 1
Query:    1 IKWDIMSWTPDGYVAVVTIFNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTEQGDCSKYKGNIPHCCKKDPTVVDLLPGTPYNQQIENCCKGGVISSWAQDPTTALSSFQLSVGAAGTTNKTVRVPK 390
            IKWDIMSWT DGYVAVVTIFNFQQYRHI+APGW LGW+W KKEVIWSM+GGQ TEQGDCSK+KGNIPHCCKK P +VDLLPGTPYNQQI NCC+GGVIS+WAQDP TA+SSFQ+SVG +GTTN TVR P+
Sbjct:   40 IKWDIMSWTGDGYVAVVTIFNFQQYRHIEAPGWQLGWSWMKKEVIWSMVGGQATEQGDCSKFKGNIPHCCKKTPAIVDLLPGTPYNQQISNCCRGGVISAWAQDPATAISSFQISVGQSGTTNTTVRAPR 169          
BLAST of CX289498 vs. ExPASy Swiss-Prot
Match: COBL1_ARATH (COBRA-like protein 1 OS=Arabidopsis thaliana GN=COBL1 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 2.361e-65
Identity = 105/130 (80.77%), Postives = 121/130 (93.08%), Query Frame = 1
Query:    1 IKWDIMSWTPDGYVAVVTIFNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTEQGDCSKYKGNIPHCCKKDPTVVDLLPGTPYNQQIENCCKGGVISSWAQDPTTALSSFQLSVGAAGTTNKTVRVPK 390
            +KWDI++WT DGYVA VT++NFQQYRHIQAPGWTLGW+WAK+EVIW M GGQTTEQGDCSK+KG IPHCCKK P+VVDLLPG+PYNQQI NCC+GGV++SWAQDP TA+S+FQL+VG AGTTNKTVRVPK
Sbjct:   45 VKWDIITWTGDGYVATVTVYNFQQYRHIQAPGWTLGWSWAKREVIWGMNGGQTTEQGDCSKFKGTIPHCCKKTPSVVDLLPGSPYNQQIANCCRGGVLNSWAQDPATAVSAFQLTVGQAGTTNKTVRVPK 174          
BLAST of CX289498 vs. ExPASy Swiss-Prot
Match: COBL3_ORYSJ (COBRA-like protein 3 OS=Oryza sativa subsp. japonica GN=BC1L4 PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 1.530e-64
Identity = 106/130 (81.54%), Postives = 119/130 (91.54%), Query Frame = 1
Query:    1 IKWDIMSWTPDGYVAVVTIFNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTEQGDCSKYKGNIPHCCKKDPTVVDLLPGTPYNQQIENCCKGGVISSWAQDPTTALSSFQLSVGAAGTTNKTVRVPK 390
            IKWD+MSWTPDGYVAVVT+FN+QQ+RHIQAPGW LGWTWAKKEVIWSM+G QTTEQGDCSK+KG  PHCCKKDPTVVDLLPGTPYN QI NCCK GVI+++ QDP+ A SSFQ+SVG AGTTNKTV++PK
Sbjct:   48 IKWDVMSWTPDGYVAVVTMFNYQQFRHIQAPGWQLGWTWAKKEVIWSMVGAQTTEQGDCSKFKGGTPHCCKKDPTVVDLLPGTPYNMQIANCCKAGVINTFNQDPSNAASSFQISVGLAGTTNKTVKLPK 177          
BLAST of CX289498 vs. ExPASy Swiss-Prot
Match: COBL1_ORYSJ (COBRA-like protein 1 OS=Oryza sativa subsp. japonica GN=BC1L6 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 1.998e-64
Identity = 101/130 (77.69%), Postives = 118/130 (90.77%), Query Frame = 1
Query:    1 IKWDIMSWTPDGYVAVVTIFNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTEQGDCSKYKGNIPHCCKKDPTVVDLLPGTPYNQQIENCCKGGVISSWAQDPTTALSSFQLSVGAAGTTNKTVRVPK 390
            IKWD++ WTPDGYVAVV+++N+QQYRHIQ+PGW LGW WAKKE+IW+M GGQ TEQGDCSK+K NIPHCCKKDP +VDLLPGTPYN QI NCCKGGV++SWAQDP  A++SFQ+SVG AGTTNKTVRVP+
Sbjct:   40 IKWDVLQWTPDGYVAVVSLYNYQQYRHIQSPGWKLGWVWAKKEIIWAMNGGQATEQGDCSKFKSNIPHCCKKDPEIVDLLPGTPYNMQIANCCKGGVLNSWAQDPANAIASFQVSVGQAGTTNKTVRVPR 169          
BLAST of CX289498 vs. ExPASy Swiss-Prot
Match: COBL4_ARATH (COBRA-like protein 4 OS=Arabidopsis thaliana GN=COBL4 PE=2 SV=2)

HSP 1 Score: 239.965 bits (611), Expect = 2.886e-63
Identity = 104/130 (80.00%), Postives = 114/130 (87.69%), Query Frame = 1
Query:    1 IKWDIMSWTPDGYVAVVTIFNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTEQGDCSKYKGNIPHCCKKDPTVVDLLPGTPYNQQIENCCKGGVISSWAQDPTTALSSFQLSVGAAGTTNKTVRVPK 390
            IKWDIMSWT DGYVA VT+ NFQ YRHIQ PGWTLGWTWAKKEVIWSM+G QTTEQGDCSK+KGN+PHCCKK PTVVDLLPG PYNQQ  NCCKGGVI +W QDP+ A+S FQ+S G AGTTNKTV++PK
Sbjct:   32 IKWDIMSWTADGYVATVTMNNFQIYRHIQNPGWTLGWTWAKKEVIWSMVGAQTTEQGDCSKFKGNVPHCCKKTPTVVDLLPGVPYNQQFSNCCKGGVIGAWGQDPSAAVSQFQVSAGLAGTTNKTVKLPK 161          
BLAST of CX289498 vs. ExPASy Swiss-Prot
Match: COBL2_ORYSJ (COBRA-like protein 2 OS=Oryza sativa subsp. japonica GN=BC1L2 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 4.607e-61
Identity = 97/130 (74.62%), Postives = 113/130 (86.92%), Query Frame = 1
Query:    1 IKWDIMSWTPDGYVAVVTIFNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTEQGDCSKYKGNIPHCCKKDPTVVDLLPGTPYNQQIENCCKGGVISSWAQDPTTALSSFQLSVGAAGTTNKTVRVPK 390
            IKWDI  WTPDGYVAVVTI+NFQ+YRHIQAPGW+LGW WAKKE+IWSM GGQ TEQGDCS +K NIPHCCK+DP VVDL+PG PYN Q  NCCKGGV++SW QDP  A++SFQ++VG +GT+NKTV+ PK
Sbjct:   41 IKWDITQWTPDGYVAVVTIYNFQKYRHIQAPGWSLGWAWAKKEIIWSMAGGQATEQGDCSAFKANIPHCCKRDPRVVDLVPGAPYNMQFGNCCKGGVLTSWVQDPLNAVASFQITVGHSGTSNKTVKAPK 170          
BLAST of CX289498 vs. ExPASy Swiss-Prot
Match: COBL6_ORYSJ (COBRA-like protein 6 OS=Oryza sativa subsp. japonica GN=BC1L7 PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 2.003e-56
Identity = 89/130 (68.46%), Postives = 113/130 (86.92%), Query Frame = 1
Query:    1 IKWDIMSWTPDGYVAVVTIFNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTEQGDCSKYKGNIPHCCKKDPTVVDLLPGTPYNQQIENCCKGGVISSWAQDPTTALSSFQLSVGAAGTTNKTVRVPK 390
            IKWD+MSWTPDGYVA+VTI N+Q YR I APGWT+GWTWA++EVIWSM+G Q T+QGDCS++K N+PHCC++ P VVDLLPG PYNQQI NCC+GGV+ ++ Q P+ A ++FQ+SVG AGTTN+TVR+P+
Sbjct:   33 IKWDVMSWTPDGYVAMVTINNYQTYRQIMAPGWTVGWTWARQEVIWSMVGAQATDQGDCSRFKANLPHCCRRTPAVVDLLPGVPYNQQIANCCRGGVLPAYGQAPSAAAAAFQVSVGQAGTTNRTVRLPR 162          
BLAST of CX289498 vs. ExPASy Swiss-Prot
Match: COBL5_ORYSJ (COBRA-like protein 5 OS=Oryza sativa subsp. japonica GN=BC1 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 2.003e-56
Identity = 91/129 (70.54%), Postives = 112/129 (86.82%), Query Frame = 1
Query:    1 IKWDIMSWTPDGYVAVVTIFNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTEQGDCSKYKGNIPHCCKKDPTVVDLLPGTPYNQQIENCCKGGVISSWAQDPTTALSSFQLSVGAAGTTNKTVRVP 387
            IKWD++SWTPDGYVA+VT+ N+Q YR I APGWT+GW+WAKKEVIWS++G Q TEQGDCSK+KG IPH CK+ P +VDLLPG PYNQQI NCCK GV+S++ QDP  ++S+FQ+SVG AGTTNKTV++P
Sbjct:   34 IKWDVISWTPDGYVAMVTMSNYQMYRQILAPGWTVGWSWAKKEVIWSIVGAQATEQGDCSKFKGGIPHSCKRTPAIVDLLPGVPYNQQIANCCKAGVVSAYGQDPAGSVSAFQVSVGLAGTTNKTVKLP 162          
BLAST of CX289498 vs. ExPASy Swiss-Prot
Match: COBL5_ORYSI (COBRA-like protein 5 OS=Oryza sativa subsp. indica GN=BC1 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 2.003e-56
Identity = 91/129 (70.54%), Postives = 112/129 (86.82%), Query Frame = 1
Query:    1 IKWDIMSWTPDGYVAVVTIFNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTEQGDCSKYKGNIPHCCKKDPTVVDLLPGTPYNQQIENCCKGGVISSWAQDPTTALSSFQLSVGAAGTTNKTVRVP 387
            IKWD++SWTPDGYVA+VT+ N+Q YR I APGWT+GW+WAKKEVIWS++G Q TEQGDCSK+KG IPH CK+ P +VDLLPG PYNQQI NCCK GV+S++ QDP  ++S+FQ+SVG AGTTNKTV++P
Sbjct:   34 IKWDVISWTPDGYVAMVTMSNYQMYRQILAPGWTVGWSWAKKEVIWSIVGAQATEQGDCSKFKGGIPHSCKRTPAIVDLLPGVPYNQQIANCCKAGVVSAYGQDPAGSVSAFQVSVGLAGTTNKTVKLP 162          
The following BLAST results are available for this feature:
BLAST of CX289498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
COBRA_ARATH5.430e-7087.69Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 ... [more]
COBL2_ARATH3.642e-6683.08COBRA-like protein 2 OS=Arabidopsis thaliana GN=CO... [more]
COBL1_ARATH2.361e-6580.77COBRA-like protein 1 OS=Arabidopsis thaliana GN=CO... [more]
COBL3_ORYSJ1.530e-6481.54COBRA-like protein 3 OS=Oryza sativa subsp. japoni... [more]
COBL1_ORYSJ1.998e-6477.69COBRA-like protein 1 OS=Oryza sativa subsp. japoni... [more]
COBL4_ARATH2.886e-6380.00COBRA-like protein 4 OS=Arabidopsis thaliana GN=CO... [more]
COBL2_ORYSJ4.607e-6174.62COBRA-like protein 2 OS=Oryza sativa subsp. japoni... [more]
COBL6_ORYSJ2.003e-5668.46COBRA-like protein 6 OS=Oryza sativa subsp. japoni... [more]
COBL5_ORYSJ2.003e-5670.54COBRA-like protein 5 OS=Oryza sativa subsp. japoni... [more]
COBL5_ORYSI2.003e-5670.54COBRA-like protein 5 OS=Oryza sativa subsp. indica... [more]

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Properties
Property NameValue
Genbank descriptionC02014A03SK IF1 Citrus clementina cDNA clone C02014A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289498 ID=CX289498; Name=CX289498; organism=Citrus clementina; type=EST; length=390bp
ATAAAATGGGATATAATGTCCTGGACTCCAGATGGCTATGTTGCTGTTGT
TACGATTTTCAACTTCCAACAATATCGCCATATTCAAGCACCAGGTTGGA
CATTGGGGTGGACATGGGCAAAAAAGGAAGTCATCTGGAGCATGATGGGA
GGACAAACCACAGAACAAGGAGATTGTTCAAAATATAAAGGGAACATCCC
ACATTGCTGCAAGAAGGATCCAACAGTTGTAGATTTGTTGCCGGGGACTC
CATATAACCAGCAGATTGAAAATTGTTGCAAAGGGGGAGTAATAAGCTCC
TGGGCACAGGACCCAACTACTGCATTAAGCTCATTCCAGCTCAGTGTTGG
TGCTGCAGGAACAACTAACAAAACTGTCAGAGTACCCAAA
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