CX289501

Overview
NameCX289501
Unique NameCX289501
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length390
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14932 contig Ccv1_Contig14932:221..613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289501 vs. ExPASy Swiss-Prot
Match: PSD13_DICDI (26S proteasome non-ATPase regulatory subunit 13 OS=Dictyostelium discoideum GN=psmD13 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.699e-26
Identity = 58/127 (45.67%), Postives = 87/127 (68.50%), Query Frame = 3
Query:    6 LQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFR-PSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGK 383
            L+AFN GD+ +++ L   H   +  Q A+  N +KL +KI+IL L+E+ FR PS+ R+I  S IA+ TKL + ++EHLLMKSLS++LI+G IDQ    +H++WV PR+L + QI S+ +R+  W  K
Sbjct:  242 LKAFNIGDIQQFEGLMSQHRDIISTQTAITNNMQKLRQKISILSLLELAFRTPSDKRSISFSKIAQATKLPLGEIEHLLMKSLSLNLIKGSIDQTVEIIHITWVTPRILDLNQINSMNNRIAEWTEK 368          
BLAST of CX289501 vs. ExPASy Swiss-Prot
Match: PSD13_RAT (26S proteasome non-ATPase regulatory subunit 13 OS=Rattus norvegicus GN=Psmd13 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.406e-25
Identity = 61/124 (49.19%), Postives = 84/124 (67.74%), Query Frame = 3
Query:    6 LQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIF-RPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSW 374
            L AFNSGD+ R+Q L     +A   QP L  NE +LL KI +LCLME+ F RP+  R +    IA+  K+++  VE L+MK+LSV L+ G ID+V+  VH++WVQPRVL + QIK ++DRL+ W
Sbjct:  237 LYAFNSGDVDRFQTL----KSAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNKVELLVMKALSVGLVRGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLELW 356          
BLAST of CX289501 vs. ExPASy Swiss-Prot
Match: PSD13_HUMAN (26S proteasome non-ATPase regulatory subunit 13 OS=Homo sapiens GN=PSMD13 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.836e-25
Identity = 60/124 (48.39%), Postives = 85/124 (68.55%), Query Frame = 3
Query:    6 LQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIF-RPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSW 374
            L AFNSG++ R+Q L      A   QP L  NE +LL KI +LCLME+ F RP+  R +    IA+  K+++ +VE L+MK+LSV L++G ID+V+  VH++WVQPRVL + QIK ++DRL+ W
Sbjct:  237 LYAFNSGNVERFQTL----KTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFW 356          
BLAST of CX289501 vs. ExPASy Swiss-Prot
Match: PSD13_BOVIN (26S proteasome non-ATPase regulatory subunit 13 OS=Bos taurus GN=PSMD13 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.398e-25
Identity = 60/124 (48.39%), Postives = 84/124 (67.74%), Query Frame = 3
Query:    6 LQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIF-RPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSW 374
            L AFNSG++ R+Q L      A   QP L  NE +LL KI +LCLME+ F RP+  R +    IA   K+++ +VE L+MK+LSV L++G ID+V+  VH++WVQPRVL + QIK ++DRL+ W
Sbjct:  237 LYAFNSGNVERFQTL----KTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIARSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFW 356          
BLAST of CX289501 vs. ExPASy Swiss-Prot
Match: PSD13_CHICK (26S proteasome non-ATPase regulatory subunit 13 OS=Gallus gallus GN=PSMD13 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.190e-24
Identity = 59/124 (47.58%), Postives = 85/124 (68.55%), Query Frame = 3
Query:    6 LQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIF-RPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSW 374
            L AFNSG++  +Q L     +A   QP L  NE  LL+KI +LCLME+ F RP+  R +    IA+  K+++ +VE L+MK+LSV L++G ID+V+  VH++WVQPRVL + QIK ++DRL+ W
Sbjct:  237 LYAFNSGNVETFQAL----KSAWGQQPDLAANEALLLQKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKVTVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFW 356          
BLAST of CX289501 vs. ExPASy Swiss-Prot
Match: PSD13_MOUSE (26S proteasome non-ATPase regulatory subunit 13 OS=Mus musculus GN=Psmd13 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.554e-24
Identity = 60/124 (48.39%), Postives = 82/124 (66.13%), Query Frame = 3
Query:    6 LQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIF-RPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSW 374
            L AFNSG + R+Q L      A   QP L  NE +LL KI +LCLME+ F RP+  R +    IA+  K+++  VE L+MK+LSV L+ G ID+V+  VH++WVQPRVL + QIK ++DRL+ W
Sbjct:  237 LYAFNSGAVDRFQTL----KCAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNKVELLVMKALSVGLVRGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLELW 356          
BLAST of CX289501 vs. ExPASy Swiss-Prot
Match: RPN9_YEAST (26S proteasome regulatory subunit RPN9 OS=Saccharomyces cerevisiae GN=RPN9 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.249e-15
Identity = 45/128 (35.16%), Postives = 76/128 (59.38%), Query Frame = 3
Query:    3 ILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGKV 386
            +L A   GD  ++  L +V  + +   P L ++E  L +KI ++ L+E +F     R +    I++ T L  ++VEHL+M+++S+ L++G IDQV   V +SWVQPR++   QI  ++DRL  W  +V
Sbjct:  254 LLNALTVGDFDKFDSLIKVQISKI---PILAQHESFLRQKICLMTLIETVF-VKNIRMLSFEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKDRLVEWNDQV 377          
BLAST of CX289501 vs. ExPASy Swiss-Prot
Match: RPN9_SCHPO (Probable 26S proteasome regulatory subunit rpn9 OS=Schizosaccharomyces pombe GN=rpn9 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.236e-14
Identity = 45/122 (36.89%), Postives = 68/122 (55.74%), Query Frame = 3
Query:   12 AFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFR-PSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSW 374
            A N GDL  ++ L       +   P L  +   L +KI ++ L+E++F+ P   RT+    IA  T++   +VE L+M++LSV LI G+ID+V   V +S VQ R+L   QI S+  RL  W
Sbjct:  244 AMNVGDLPLFERLM----GQINKMPLLQSSVALLGQKIRLMALIELVFQLPPNQRTLTFDTIARATRIPSNEVELLIMRALSVGLITGVIDEVTQIVTISSVQSRILNHSQIASMESRLREW 361          
The following BLAST results are available for this feature:
BLAST of CX289501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PSD13_DICDI3.699e-2645.6726S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_RAT1.406e-2549.1926S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_HUMAN1.836e-2548.3926S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_BOVIN2.398e-2548.3926S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_CHICK1.190e-2447.5826S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_MOUSE1.554e-2448.3926S proteasome non-ATPase regulatory subunit 13 OS... [more]
RPN9_YEAST2.249e-1535.1626S proteasome regulatory subunit RPN9 OS=Saccharo... [more]
RPN9_SCHPO7.236e-1436.89Probable 26S proteasome regulatory subunit rpn9 OS... [more]
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Properties
Property NameValue
Genbank descriptionC02014A06SK IF1 Citrus clementina cDNA clone C02014A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289501 ID=CX289501; Name=CX289501; organism=Citrus clementina; type=EST; length=390bp
GGATTCTCCAGGCATTCAACTCTGGTGACTTAGTTCGCTATCAAGAATTA
TGCCGTGTACACAATGCTGCTCTGAGAGCTCAACCAGCACTAGTTGAGAA
CGAGAAGAAGCTATTGGAAAAGATTAACATTCTCTGCCTGATGGAAATCA
TCTTTAGGCCTTCTGAGGACCGAACTATTCCATTAAGCATCATTGCAGAG
CGCACAAAACTTTCTATTGAGGATGTTGAGCATCTTCTCATGAAGTCTCT
CTCTGTTCACCTCATAGAGGGTATAATTGATCAAGTTGAGGGCACGGTAC
ATGTGTCCTGGGTGCAACCAAGAGTTTTGGGAATCCCCCAGATCAAATCC
TTGCGTGATCGGCTGGACAGTTGGTTGGGCAAAGTACATA
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