CX289501
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX289501 vs. ExPASy Swiss-Prot
Match: PSD13_DICDI (26S proteasome non-ATPase regulatory subunit 13 OS=Dictyostelium discoideum GN=psmD13 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 3.699e-26 Identity = 58/127 (45.67%), Postives = 87/127 (68.50%), Query Frame = 3 Query: 6 LQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFR-PSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGK 383 L+AFN GD+ +++ L H + Q A+ N +KL +KI+IL L+E+ FR PS+ R+I S IA+ TKL + ++EHLLMKSLS++LI+G IDQ +H++WV PR+L + QI S+ +R+ W K Sbjct: 242 LKAFNIGDIQQFEGLMSQHRDIISTQTAITNNMQKLRQKISILSLLELAFRTPSDKRSISFSKIAQATKLPLGEIEHLLMKSLSLNLIKGSIDQTVEIIHITWVTPRILDLNQINSMNNRIAEWTEK 368
BLAST of CX289501 vs. ExPASy Swiss-Prot
Match: PSD13_RAT (26S proteasome non-ATPase regulatory subunit 13 OS=Rattus norvegicus GN=Psmd13 PE=1 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 1.406e-25 Identity = 61/124 (49.19%), Postives = 84/124 (67.74%), Query Frame = 3 Query: 6 LQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIF-RPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSW 374 L AFNSGD+ R+Q L +A QP L NE +LL KI +LCLME+ F RP+ R + IA+ K+++ VE L+MK+LSV L+ G ID+V+ VH++WVQPRVL + QIK ++DRL+ W Sbjct: 237 LYAFNSGDVDRFQTL----KSAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNKVELLVMKALSVGLVRGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLELW 356
BLAST of CX289501 vs. ExPASy Swiss-Prot
Match: PSD13_HUMAN (26S proteasome non-ATPase regulatory subunit 13 OS=Homo sapiens GN=PSMD13 PE=1 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.836e-25 Identity = 60/124 (48.39%), Postives = 85/124 (68.55%), Query Frame = 3 Query: 6 LQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIF-RPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSW 374 L AFNSG++ R+Q L A QP L NE +LL KI +LCLME+ F RP+ R + IA+ K+++ +VE L+MK+LSV L++G ID+V+ VH++WVQPRVL + QIK ++DRL+ W Sbjct: 237 LYAFNSGNVERFQTL----KTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFW 356
BLAST of CX289501 vs. ExPASy Swiss-Prot
Match: PSD13_BOVIN (26S proteasome non-ATPase regulatory subunit 13 OS=Bos taurus GN=PSMD13 PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 2.398e-25 Identity = 60/124 (48.39%), Postives = 84/124 (67.74%), Query Frame = 3 Query: 6 LQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIF-RPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSW 374 L AFNSG++ R+Q L A QP L NE +LL KI +LCLME+ F RP+ R + IA K+++ +VE L+MK+LSV L++G ID+V+ VH++WVQPRVL + QIK ++DRL+ W Sbjct: 237 LYAFNSGNVERFQTL----KTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIARSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFW 356
BLAST of CX289501 vs. ExPASy Swiss-Prot
Match: PSD13_CHICK (26S proteasome non-ATPase regulatory subunit 13 OS=Gallus gallus GN=PSMD13 PE=1 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 1.190e-24 Identity = 59/124 (47.58%), Postives = 85/124 (68.55%), Query Frame = 3 Query: 6 LQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIF-RPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSW 374 L AFNSG++ +Q L +A QP L NE LL+KI +LCLME+ F RP+ R + IA+ K+++ +VE L+MK+LSV L++G ID+V+ VH++WVQPRVL + QIK ++DRL+ W Sbjct: 237 LYAFNSGNVETFQAL----KSAWGQQPDLAANEALLLQKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKVTVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFW 356
BLAST of CX289501 vs. ExPASy Swiss-Prot
Match: PSD13_MOUSE (26S proteasome non-ATPase regulatory subunit 13 OS=Mus musculus GN=Psmd13 PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 1.554e-24 Identity = 60/124 (48.39%), Postives = 82/124 (66.13%), Query Frame = 3 Query: 6 LQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIF-RPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSW 374 L AFNSG + R+Q L A QP L NE +LL KI +LCLME+ F RP+ R + IA+ K+++ VE L+MK+LSV L+ G ID+V+ VH++WVQPRVL + QIK ++DRL+ W Sbjct: 237 LYAFNSGAVDRFQTL----KCAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNKVELLVMKALSVGLVRGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLELW 356
BLAST of CX289501 vs. ExPASy Swiss-Prot
Match: RPN9_YEAST (26S proteasome regulatory subunit RPN9 OS=Saccharomyces cerevisiae GN=RPN9 PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 2.249e-15 Identity = 45/128 (35.16%), Postives = 76/128 (59.38%), Query Frame = 3 Query: 3 ILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGKV 386 +L A GD ++ L +V + + P L ++E L +KI ++ L+E +F R + I++ T L ++VEHL+M+++S+ L++G IDQV V +SWVQPR++ QI ++DRL W +V Sbjct: 254 LLNALTVGDFDKFDSLIKVQISKI---PILAQHESFLRQKICLMTLIETVF-VKNIRMLSFEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKDRLVEWNDQV 377
BLAST of CX289501 vs. ExPASy Swiss-Prot
Match: RPN9_SCHPO (Probable 26S proteasome regulatory subunit rpn9 OS=Schizosaccharomyces pombe GN=rpn9 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.236e-14 Identity = 45/122 (36.89%), Postives = 68/122 (55.74%), Query Frame = 3 Query: 12 AFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFR-PSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSW 374 A N GDL ++ L + P L + L +KI ++ L+E++F+ P RT+ IA T++ +VE L+M++LSV LI G+ID+V V +S VQ R+L QI S+ RL W Sbjct: 244 AMNVGDLPLFERLM----GQINKMPLLQSSVALLGQKIRLMALIELVFQLPPNQRTLTFDTIARATRIPSNEVELLIMRALSVGLITGVIDEVTQIVTISSVQSRILNHSQIASMESRLREW 361 The following BLAST results are available for this feature:
BLAST of CX289501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX289501 ID=CX289501; Name=CX289501; organism=Citrus clementina; type=EST; length=390bpback to top |