CX289506

Overview
NameCX289506
Unique NameCX289506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length391
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig218 contig Ccv1_Contig218:13..403. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289506 vs. ExPASy Swiss-Prot
Match: WNK8_ARATH (Serine/threonine-protein kinase WNK8 OS=Arabidopsis thaliana GN=WNK8 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.040e-28
Identity = 69/129 (53.49%), Postives = 81/129 (62.79%), Query Frame = 3
Query:    3 VTCEYPYNECKNPAQIYKKVTSGIKPASLSKVTDPQVKQFIEKCIVPASLRLPALELLKDPFLVTDNPKDLVCDPLRLPNLVPEVMNLAHSEPHPMDIDLNHKKVSADSCAKSNTGTWFLTLELQRLTE 389
            VTCEYPYNEC+N AQIYKKVTS IKP SL KV DPQV+QFIEKC++PAS R  ALEL KDPFL  D  KD     L   +   + +     E  PMD+D N  K    S + +    W  T+ELQR+ E
Sbjct:  224 VTCEYPYNECRNQAQIYKKVTSNIKPQSLGKVDDPQVRQFIEKCLLPASSRPTALELSKDPFLARDGGKDSAL--LASSSTSSKYVRPPQLEHLPMDVDHNENK----SVSSNEDYPWSQTIELQRIAE 346          
BLAST of CX289506 vs. ExPASy Swiss-Prot
Match: WNK10_ARATH (Probable serine/threonine-protein kinase WNK10 OS=Arabidopsis thaliana GN=WNK10 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.734e-27
Identity = 70/131 (53.44%), Postives = 81/131 (61.83%), Query Frame = 3
Query:    3 VTCEYPYNECKNPAQIYKKVTSGIKPASLSKVTDPQVKQFIEKCIVPASLRLPALELLKDPFLVTDNPKDLVCDPLRLPNLVPEVMNLAHSEPHPMDIDL-NHKKVSADSCAKSNTGTWFL-TLELQRLTE 389
            VTCEYPY EC+N AQIYKKVTSGIKP SLSKV DPQVKQFIEKC++PA  R  ALELLKD  L  D  KD            P +      E  PMD++   +  VS  S AKS+     L T+E+QR+ E
Sbjct:  211 VTCEYPYRECRNQAQIYKKVTSGIKPQSLSKVDDPQVKQFIEKCLLPAPSRPTALELLKDQLLAVDGAKDSTLTASSNTTFKPAMP--PQCEYRPMDVEYKKNTSVSICSSAKSSQECALLQTMEVQRVAE 339          
BLAST of CX289506 vs. ExPASy Swiss-Prot
Match: WNK4_ORYSJ (Probable serine/threonine-protein kinase WNK4 OS=Oryza sativa subsp. japonica GN=WNK4 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.718e-23
Identity = 55/115 (47.83%), Postives = 82/115 (71.30%), Query Frame = 3
Query:    6 TCEYPYNECKNPAQIYKKVTSGIKPASLSKVTDPQVKQFIEKCIVPASLRLPALELLKDPFLVTDNPKDLVCDPLRLPNLVPEVMNLAHSEPHPMDIDLNHKKVSADSCAKSNTG 350
            T EYPY+EC N AQI+KKV+ G+KPA+L+K+T+ Q KQFI+KC+VPAS RL A ELL+DPFL +DN   LV    + P+ +P+ ++++    H MD+D N + +   +C +++ G
Sbjct:  221 TLEYPYSECTNAAQIFKKVSKGVKPAALAKITNIQAKQFIDKCLVPASERLSAKELLQDPFLCSDNSSVLV--GTKFPSSLPKSVDVSLEALH-MDVDTN-ESMCTSTCKRNDLG 331          
BLAST of CX289506 vs. ExPASy Swiss-Prot
Match: WNK6_ARATH (Probable serine/threonine-protein kinase WNK6 OS=Arabidopsis thaliana GN=WNK6 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.240e-22
Identity = 54/82 (65.85%), Postives = 65/82 (79.27%), Query Frame = 3
Query:    3 VTCEYPYNECKNPAQIYKKVTSGIKPASLSKVTDPQVKQFIEKCIVPASLRLPALELLKDPFLVTDNPKDLVCDPLRLPNLV 248
            VT +YPY ECKN AQIYKKV+SGIKPASLS+V DP+VKQFIEKC++PAS RL A ELL DPFL  +     + +PL LP++V
Sbjct:  223 VTFDYPYCECKNSAQIYKKVSSGIKPASLSRVKDPEVKQFIEKCLLPASERLSAKELLLDPFLQLNGL--TMNNPLPLPDIV 302          
BLAST of CX289506 vs. ExPASy Swiss-Prot
Match: WNK7_ARATH (Probable serine/threonine-protein kinase WNK7 OS=Arabidopsis thaliana GN=WNK7 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.111e-21
Identity = 55/83 (66.27%), Postives = 64/83 (77.11%), Query Frame = 3
Query:    3 VTCEYPYNECKNPAQIYKKVTSGIKPASLSKVTDPQVKQFIEKCIVPASLRLPALELLKDPFLVTDNPKDLVC-DPLRLPNLV 248
            VT EYPY EC+N AQIYKKV+SGIKPASLSKV DP+V +FIEKC++PAS RL A ELL D FL   N   LV  +PL LP++V
Sbjct:  223 VTFEYPYCECRNSAQIYKKVSSGIKPASLSKVKDPEVMKFIEKCLLPASERLSAEELLLDSFL---NVNGLVMNNPLPLPDIV 302          
BLAST of CX289506 vs. ExPASy Swiss-Prot
Match: WNK3_ARATH (Probable serine/threonine-protein kinase WNK3 OS=Arabidopsis thaliana GN=WNK3 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.567e-19
Identity = 46/63 (73.02%), Postives = 50/63 (79.37%), Query Frame = 3
Query:    3 VTCEYPYNECKNPAQIYKKVTSGIKPASLSKVTDPQVKQFIEKCIVPASLRLPALELLKDPFL 191
            VT EYPY+EC N AQIY+KVTSGIKPA+L  VTDPQV+ FIEKCI   S RL A ELL DPFL
Sbjct:  218 VTFEYPYSECTNAAQIYRKVTSGIKPAALLNVTDPQVRAFIEKCIAKVSQRLSAKELLDDPFL 280          
BLAST of CX289506 vs. ExPASy Swiss-Prot
Match: WNK1_ORYSJ (Probable serine/threonine-protein kinase WNK1 OS=Oryza sativa subsp. japonica GN=WNK1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.353e-19
Identity = 48/75 (64.00%), Postives = 54/75 (72.00%), Query Frame = 3
Query:    3 VTCEYPYNECKNPAQIYKKVTSGIKPASLSKVTDPQVKQFIEKCIVPASLRLPALELLKDPFLVTDNPKDLVCDP 227
            VT EYPY+EC +P QIYKKV SG KP +L KV DP V+QF+EKC+  AS RL A ELLKDPFL  D   DLV  P
Sbjct:  222 VTFEYPYSECTHPVQIYKKVISGTKPEALYKVKDPMVRQFVEKCLATASRRLSARELLKDPFLQVD---DLVFCP 293          
BLAST of CX289506 vs. ExPASy Swiss-Prot
Match: WNK1_ORYSI (Probable serine/threonine-protein kinase WNK1 OS=Oryza sativa subsp. indica GN=WNK1 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.353e-19
Identity = 48/75 (64.00%), Postives = 54/75 (72.00%), Query Frame = 3
Query:    3 VTCEYPYNECKNPAQIYKKVTSGIKPASLSKVTDPQVKQFIEKCIVPASLRLPALELLKDPFLVTDNPKDLVCDP 227
            VT EYPY+EC +P QIYKKV SG KP +L KV DP V+QF+EKC+  AS RL A ELLKDPFL  D   DLV  P
Sbjct:  222 VTFEYPYSECTHPVQIYKKVISGTKPEALYKVKDPMVRQFVEKCLATASRRLSARELLKDPFLQVD---DLVFCP 293          
BLAST of CX289506 vs. ExPASy Swiss-Prot
Match: WNK6_ORYSJ (Probable serine/threonine-protein kinase WNK6 OS=Oryza sativa subsp. japonica GN=WNK6 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.720e-19
Identity = 48/93 (51.61%), Postives = 60/93 (64.52%), Query Frame = 3
Query:    3 VTCEYPYNECKNPAQIYKKVTSGIKPASLSKVTDPQVKQFIEKCIVPASLRLPALELLKDPFLVTDNPKDLVCDPLRLPNLVPEVMNLAHSEP 281
            VTCE PY+ECK   QIYKK+T G+KPA+LSKV D +V+ FIE C+   S RLPA ELLK PFL +D+      + ++ P   PE  N    EP
Sbjct:  231 VTCECPYSECKGFIQIYKKITEGVKPAALSKVKDAEVRGFIESCLASVSDRLPASELLKSPFLQSDDANHRSSNSVQEPVKFPE-NNFTKDEP 322          
BLAST of CX289506 vs. ExPASy Swiss-Prot
Match: WNK2_ARATH (Serine/threonine-protein kinase WNK2 OS=Arabidopsis thaliana GN=WNK2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.470e-19
Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = 3
Query:    3 VTCEYPYNECKNPAQIYKKVTSGIKPASLSKVTDPQVKQFIEKCIVPASLRLPALELLKDPFLVTDNPKDLVCDPL 230
            VT +YPY+EC +PAQIYKKVTSG KP +   V DP+V++F+EKC+   + RL ALELL+DPFL  DN    V  P+
Sbjct:  219 VTFDYPYSECTHPAQIYKKVTSGKKPEAFYLVKDPEVREFVEKCLANVTCRLTALELLQDPFLQDDNMDGFVMRPI 294          
The following BLAST results are available for this feature:
BLAST of CX289506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
WNK8_ARATH1.040e-2853.49Serine/threonine-protein kinase WNK8 OS=Arabidopsi... [more]
WNK10_ARATH9.734e-2753.44Probable serine/threonine-protein kinase WNK10 OS=... [more]
WNK4_ORYSJ1.718e-2347.83Probable serine/threonine-protein kinase WNK4 OS=O... [more]
WNK6_ARATH3.240e-2265.85Probable serine/threonine-protein kinase WNK6 OS=A... [more]
WNK7_ARATH6.111e-2166.27Probable serine/threonine-protein kinase WNK7 OS=A... [more]
WNK3_ARATH2.567e-1973.02Probable serine/threonine-protein kinase WNK3 OS=A... [more]
WNK1_ORYSJ3.353e-1964.00Probable serine/threonine-protein kinase WNK1 OS=O... [more]
WNK1_ORYSI3.353e-1964.00Probable serine/threonine-protein kinase WNK1 OS=O... [more]
WNK6_ORYSJ5.720e-1951.61Probable serine/threonine-protein kinase WNK6 OS=O... [more]
WNK2_ARATH7.470e-1956.58Serine/threonine-protein kinase WNK2 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionC02014A11SK IF1 Citrus clementina cDNA clone C02014A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289506 ID=CX289506; Name=CX289506; organism=Citrus clementina; type=EST; length=391bp
GGGTCACTTGTGAGTACCCATATAATGAGTGCAAAAATCCAGCTCAAATA
TATAAGAAAGTTACCTCTGGTATAAAGCCTGCTTCCCTCAGTAAAGTGAC
TGATCCCCAAGTTAAGCAATTTATAGAAAAGTGTATCGTTCCAGCATCGT
TGCGACTGCCTGCCTTGGAGCTATTGAAAGACCCATTCCTTGTGACTGAC
AATCCAAAGGATCTTGTTTGTGATCCCCTGCGGCTACCCAATCTTGTTCC
CGAAGTAATGAATTTGGCCCACTCTGAACCTCATCCCATGGACATAGACC
TTAACCACAAGAAGGTTTCTGCTGACTCTTGTGCTAAAAGCAATACTGGA
ACTTGGTTTTTAACTCTAGAACTTCAGCGGCTTACTGAGAA
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