CX289577 | Citrus Genome Database

Overview


Name	CX289577
Unique Name	CX289577
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	329

Libraries


Library Name	Type
IF1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig3127	contig	Ccv1_Contig3127:472..800.	BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins

Homology

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BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPBM_MAIZE (ATP synthase subunit beta, mitochondrial OS=Zea mays GN=ATPB PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 3.575e-53
Identity = 102/107 (95.33%), Postives = 105/107 (98.13%), Query Frame = 1

Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQRVLNTGSPITVPVGR TLGRI+NVIGEPIDEKGD+KT H+LPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  143 RGQRVLNTGSPITVPVGRATLGRIINVIGEPIDEKGDIKTNHFLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 249

[Close]

BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPBM_ORYSJ (ATP synthase subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPB PE=1 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 6.098e-53
Identity = 102/107 (95.33%), Postives = 104/107 (97.20%), Query Frame = 1

Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQRVLNTGSPITVPVGR TLGRIMNVIGEPIDEKGD+ T H+LPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  142 RGQRVLNTGSPITVPVGRATLGRIMNVIGEPIDEKGDITTNHFLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 248

[Close]

BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPBM_NICPL (ATP synthase subunit beta, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPB PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.271e-50
Identity = 98/107 (91.59%), Postives = 103/107 (96.26%), Query Frame = 1

Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQRVLNTGSPITVPVGR TLGRI+NVIGE IDE+G + T+H+LPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  150 RGQRVLNTGSPITVPVGRATLGRIINVIGEAIDERGPITTDHFLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 256

[Close]

BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPBO_ARATH (ATP synthase subunit beta-3, mitochondrial OS=Arabidopsis thaliana GN=At5g08680 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.190e-48
Identity = 92/107 (85.98%), Postives = 102/107 (95.33%), Query Frame = 1

Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG++VLNTG+PITVPVGR TLGRIMNV+GEPIDE+G++KTEHYLPIHR+APA V+ AT Q+IL TGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  149 RGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 255

[Close]

BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPBN_ARATH (ATP synthase subunit beta-2, mitochondrial OS=Arabidopsis thaliana GN=At5g08690 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.190e-48
Identity = 92/107 (85.98%), Postives = 102/107 (95.33%), Query Frame = 1

Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG++VLNTG+PITVPVGR TLGRIMNV+GEPIDE+G++KTEHYLPIHR+APA V+ AT Q+IL TGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  146 RGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 252

[Close]

BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPBM_ARATH (ATP synthase subunit beta-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08670 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.190e-48
Identity = 92/107 (85.98%), Postives = 102/107 (95.33%), Query Frame = 1

Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RG++VLNTG+PITVPVGR TLGRIMNV+GEPIDE+G++KTEHYLPIHR+APA V+ AT Q+IL TGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  146 RGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 252

[Close]

BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPBM_DAUCA (ATP synthase subunit beta, mitochondrial OS=Daucus carota GN=ATPB PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 5.906e-48
Identity = 91/107 (85.05%), Postives = 101/107 (94.39%), Query Frame = 1

Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQ+VLNTG+PIT+PVGR TLGRI+NVIGEPID +G++KT+ YLPIHREAP FV+QATEQQILVTGIKVVDLLAPYQ+GGKIGLFGG  VGKTVLIMELINNVAKAH
Sbjct:  141 RGQKVLNTGAPITIPVGRATLGRIINVIGEPIDHRGEIKTDQYLPIHREAPTFVDQATEQQILVTGIKVVDLLAPYQKGGKIGLFGGDWVGKTVLIMELINNVAKAH 247

[Close]

BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPBM_HEVBR (ATP synthase subunit beta, mitochondrial OS=Hevea brasiliensis GN=ATPB PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 7.714e-48
Identity = 94/107 (87.85%), Postives = 98/107 (91.59%), Query Frame = 1

Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQRVLNTGSPITVPVGR        VIGEPIDE+GD+KT H+LPIHREAPAFV+QATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  152 RGQRVLNTGSPITVPVGRANPWTYHEVIGEPIDERGDIKTSHFLPIHREAPAFVDQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 258

[Close]

BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPBM_CHLRE (ATP synthase subunit beta, mitochondrial OS=Chlamydomonas reinhardtii GN=ATP2 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.362e-44
Identity = 88/107 (82.24%), Postives = 96/107 (89.72%), Query Frame = 1

Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQ+V+NTGSPI VPVGR TLGRIMNVIGEP+DE+G ++      IHREAP F EQ+TEQ+ILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   98 RGQKVVNTGSPIKVPVGRGTLGRIMNVIGEPVDEQGPIECSEVWSIHREAPEFTEQSTEQEILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 204

[Close]

BLAST of CX289577 vs. ExPASy Swiss-Prot
Match: ATPB_RHIE6 (ATP synthase subunit beta OS=Rhizobium etli (strain CIAT 652) GN=atpD PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.568e-43
Identity = 86/107 (80.37%), Postives = 96/107 (89.72%), Query Frame = 1

Query:    7 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 327
            RGQ+V++TG+PI+VPVG  TLGRIMNVIGEP+DE G L T H   IH++APA+VEQ+TE QILVTGIKVVDLLAPY RGGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   70 RGQQVIDTGAPISVPVGDETLGRIMNVIGEPVDEAGPLNTAHKRAIHQDAPAYVEQSTEAQILVTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNVAKAH 176

The following BLAST results are available for this feature:

BLAST of CX289577 vs. ExPASy Swiss-Prot

BLAST of CX289577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
ATPBM_MAIZE	3.575e-53	95.33	ATP synthase subunit beta, mitochondrial OS=Zea ma...	[more]
ATPBM_ORYSJ	6.098e-53	95.33	ATP synthase subunit beta, mitochondrial OS=Oryza ...	[more]
ATPBM_NICPL	1.271e-50	91.59	ATP synthase subunit beta, mitochondrial OS=Nicoti...	[more]
ATPBO_ARATH	1.190e-48	85.98	ATP synthase subunit beta-3, mitochondrial OS=Arab...	[more]
ATPBN_ARATH	1.190e-48	85.98	ATP synthase subunit beta-2, mitochondrial OS=Arab...	[more]
ATPBM_ARATH	1.190e-48	85.98	ATP synthase subunit beta-1, mitochondrial OS=Arab...	[more]
ATPBM_DAUCA	5.906e-48	85.05	ATP synthase subunit beta, mitochondrial OS=Daucus...	[more]
ATPBM_HEVBR	7.714e-48	87.85	ATP synthase subunit beta, mitochondrial OS=Hevea ...	[more]
ATPBM_CHLRE	1.362e-44	82.24	ATP synthase subunit beta, mitochondrial OS=Chlamy...	[more]
ATPB_RHIE6	2.568e-43	80.37	ATP synthase subunit beta OS=Rhizobium etli (strai...	[more]

Pages

Properties


Property Name	Value
Genbank description	C02014H02SK IF1 Citrus clementina cDNA clone C02014H02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX289577 ID=CX289577; Name=CX289577; organism=Citrus clementina; type=EST; length=329bp
TCGGCACGAGGCCAGCGCGTGCTCAATACTGGCTCTCCAATCACTGTACC
TGTGGGGAGAGTTACCCTGGGTCGTATTATGAATGTCATTGGAGAGCCTA
TTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGCCCATCCACAGA
GAGGCTCCAGCATTCGTTGAGCAGGCAACTGAACAACAGATTCTAGTCAC
TGGCATCAAGGTCGTTGATCTCCTTGCTCCATACCAAAGAGGAGGGAAGA
TCGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTGCTTATTATGGAA
CTTATTAACAATGTTGCGAAGGCTCATGG