CX289580

Overview
NameCX289580
Unique NameCX289580
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length444
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig886 contig Ccv1_Contig886:28..471. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX289580 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.853e-11
Identity = 40/123 (32.52%), Postives = 68/123 (55.28%), Query Frame = 1 
Query:   97 SEPVLDIIGNKVKSTLEYKLIPVLDGAGGFSTHLG--TNGQCPLDVIQLSSPSERGDNLRLLPYDNY-KIVKVSTDVNLRFPVKVSVKPCNEEPLWKVDSYDDPL----IVTGGSEGHPGAET 444
            + PVLD  G+++++ ++Y ++  + GAGG    LG  T   CP  V+Q  S  + G  +     D+   +V+VSTDVN+ F V +  + C+   +W++D+YD+      + T G +G PG  T
Sbjct:   28 NSPVLDTDGDELQTGVQYYVLSSISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEF-VPIRDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNT 149
The following BLAST results are available for this feature:
BLAST of CX289580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ASP_THECC8.853e-1132.5221 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
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Properties
Property NameValue
Genbank descriptionC02014H05SK IF1 Citrus clementina cDNA clone C02014H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289580 ID=CX289580; Name=CX289580; organism=Citrus clementina; type=EST; length=444bp
TCCAGTGGCAAAAAAATGAAGACTTCATTGATAACAACACTCTCCTTCCT
TATCCTTACCTTGGCCACGCAGCCTCTATTGGGCATCTCATCAAACTCTG
AACCTGTCTTAGATATCATTGGCAACAAGGTCAAATCCACCCTCGAGTAT
AAACTTATCCCAGTCCTAGATGGCGCCGGTGGATTCAGCACACACCTAGG
CACAAATGGACAGTGTCCCTTGGACGTTATCCAATTAAGTTCTCCTAGCG
AAAGGGGAGATAATTTAAGATTACTTCCGTACGACAATTACAAAATTGTC
AAGGTATCCACTGATGTCAACCTGAGATTCCCCGTAAAAGTTTCTGTTAA
GCCCTGTAATGAAGAACCATTGTGGAAAGTTGATAGCTATGACGATCCAT
TAATTGTAACCGGCGGAAGTGAGGGCCACCCAGGAGCTGAAACG
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