CX289586

Overview
NameCX289586
Unique NameCX289586
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length466
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7550 contig Ccv1_Contig7550:650..1115. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX289586 vs. ExPASy Swiss-Prot
Match: IN37_SPIOL (37 kDa inner envelope membrane protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 4.007e-84
Identity = 142/153 (92.81%), Postives = 149/153 (97.39%), Query Frame = 1 
Query:    7 AKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADMWMLFPKEEEYIEWFQKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKAEDVQKPVNP 465
            AKAK K+PLKEC IIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGI+EAYRVLK+GGKAC+IGPVYPTFWLSRFFAD+WMLFPKEEEYIEWFQKAGFKDV+LKRIGPKWYRGVRRHGLIMGCSVTGVKP SGDSPLQLGPK EDVQKPV+P
Sbjct:  155 AKAKAKKPLKECRIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACLIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKVEDVQKPVHP 307
The following BLAST results are available for this feature:
BLAST of CX289586 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IN37_SPIOL4.007e-8492.8137 kDa inner envelope membrane protein, chloroplas... [more]
back to top
Properties
Property NameValue
Genbank descriptionC02014H11SK IF1 Citrus clementina cDNA clone C02014H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289586 ID=CX289586; Name=CX289586; organism=Citrus clementina; type=EST; length=466bp
CACGAGGCCAAGGCTAAGCAGAAGGAACCCTTGAAGGAATGCACCATAAT
TGAAGGCGACGCCGAGGATCTTCCCTTCCCTACTGATTATGCAGATCGAT
ATGTGTCTGCTGGGAGTATTGAGTACTGGCCGGACCCACAGCGTGGCATC
AAAGAAGCATACAGGGTGCTGAAAATTGGAGGGAAAGCTTGTGTTATAGG
CCCTGTGTACCCAACCTTCTGGCTATCTCGCTTTTTTGCGGATATGTGGA
TGCTTTTTCCAAAGGAGGAAGAGTATATTGAATGGTTTCAGAAAGCTGGT
TTTAAAGATGTTAAACTGAAAAGGATTGGCCCAAAATGGTACCGAGGAGT
CCGTCGGCATGGCTTGATCATGGGTTGCTCTGTGACGGGTGTAAAGCCTT
TATCAGGAGACTCTCCCCTGCAGCTTGGTCCAAAGGCAGAGGATGTACAG
AAGCCCGTGAATCCTT
back to top