CX289587

Overview
NameCX289587
Unique NameCX289587
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length443
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig137 contig Ccv1_Contig137:33..475. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX289587 vs. ExPASy Swiss-Prot
Match: BT3L4_DANRE (Transcription factor BTF3 homolog 4 OS=Danio rerio GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.944e-36
Identity = 75/123 (60.98%), Postives = 97/123 (78.86%), Query Frame = 1 
Query:   46 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQ 411
            MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ KDD  VI F NPKVQAS++ANT+ ++G  +TK+L ++LPGI++QLG D+L +LRKLAEQF +Q
Sbjct:    1 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLVVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAETKQLTEMLPGILSQLGADSLTSLRKLAEQFPRQ 123
[Close]
BLAST of CX289587 vs. ExPASy Swiss-Prot
Match: BT3L4_BOVIN (Transcription factor BTF3 homolog 4 OS=Bos taurus GN=BTF3L4 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.944e-36
Identity = 75/132 (56.82%), Postives = 99/132 (75.00%), Query Frame = 1 
Query:   46 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAP 438
            MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ KDD  VI F NPKVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF +Q  ++ T  P
Sbjct:    1 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKTPKP 132
[Close]
BLAST of CX289587 vs. ExPASy Swiss-Prot
Match: BT3L4_XENTR (Transcription factor BTF3 homolog 4 OS=Xenopus tropicalis GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 7.763e-36
Identity = 74/132 (56.06%), Postives = 99/132 (75.00%), Query Frame = 1 
Query:   46 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAP 438
            MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ KDD  VI F NPKVQAS++ANT+ ++G  + K++ ++LPGI++QLG D+L +LRKLAEQF +Q  ++    P
Sbjct:    1 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEVKQITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKASKP 132
[Close]
BLAST of CX289587 vs. ExPASy Swiss-Prot
Match: BT3L4_XENLA (Transcription factor BTF3 homolog 4 OS=Xenopus laevis GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 7.763e-36
Identity = 74/132 (56.06%), Postives = 99/132 (75.00%), Query Frame = 1 
Query:   46 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAP 438
            MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ KDD  VI F NPKVQAS++ANT+ ++G  + K++ ++LPGI++QLG D+L +LRKLAEQF +Q  ++    P
Sbjct:    1 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEVKQITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKASKP 132
[Close]
BLAST of CX289587 vs. ExPASy Swiss-Prot
Match: BT3L4_PONAB (Transcription factor BTF3 homolog 4 OS=Pongo abelii GN=BTF3L4 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.259e-35
Identity = 74/132 (56.06%), Postives = 98/132 (74.24%), Query Frame = 1 
Query:   46 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAP 438
            MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ KDD  VI F NPKVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF +Q  ++    P
Sbjct:    1 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKP 132
[Close]
BLAST of CX289587 vs. ExPASy Swiss-Prot
Match: BT3L4_MOUSE (Transcription factor BTF3 homolog 4 OS=Mus musculus GN=Btf3l4 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.259e-35
Identity = 74/132 (56.06%), Postives = 98/132 (74.24%), Query Frame = 1 
Query:   46 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAP 438
            MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ KDD  VI F NPKVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF +Q  ++    P
Sbjct:    1 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKP 132
[Close]
BLAST of CX289587 vs. ExPASy Swiss-Prot
Match: BT3L4_HUMAN (Transcription factor BTF3 homolog 4 OS=Homo sapiens GN=BTF3L4 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.259e-35
Identity = 74/132 (56.06%), Postives = 98/132 (74.24%), Query Frame = 1 
Query:   46 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAP 438
            MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ KDD  VI F NPKVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF +Q  ++    P
Sbjct:    1 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKP 132
[Close]
BLAST of CX289587 vs. ExPASy Swiss-Prot
Match: BT3L4_CHICK (Transcription factor BTF3 homolog 4 OS=Gallus gallus GN=BTF3L4 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.950e-35
Identity = 73/123 (59.35%), Postives = 95/123 (77.24%), Query Frame = 1 
Query:   46 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQ 411
            MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ KDD  VI F NPKVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF +Q
Sbjct:    1 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQ 123
[Close]
BLAST of CX289587 vs. ExPASy Swiss-Prot
Match: BTF3_MOUSE (Transcription factor BTF3 OS=Mus musculus GN=Btf3 PE=2 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 5.563e-34
Identity = 72/124 (58.06%), Postives = 94/124 (75.81%), Query Frame = 1 
Query:   46 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQA 414
            MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQ +LK++GVN I  IEEVN+F +   VI F NPKVQAS+AANT+ ++G  +TK+L ++LP I+NQLG D+L +LR+LAE   KQ+
Sbjct:   48 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQS 171
[Close]
BLAST of CX289587 vs. ExPASy Swiss-Prot
Match: BTF3_HUMAN (Transcription factor BTF3 OS=Homo sapiens GN=BTF3 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.563e-34
Identity = 72/124 (58.06%), Postives = 94/124 (75.81%), Query Frame = 1 
Query:   46 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQA 414
            MN EKL K+   VR GGKG+ RRKKK VH+T T DDK+LQ +LK++GVN I  IEEVN+F +   VI F NPKVQAS+AANT+ ++G  +TK+L ++LP I+NQLG D+L +LR+LAE   KQ+
Sbjct:   50 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQS 173
The following BLAST results are available for this feature:
BLAST of CX289587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
BT3L4_DANRE5.944e-3660.98Transcription factor BTF3 homolog 4 OS=Danio rerio... [more]
BT3L4_BOVIN5.944e-3656.82Transcription factor BTF3 homolog 4 OS=Bos taurus ... [more]
BT3L4_XENTR7.763e-3656.06Transcription factor BTF3 homolog 4 OS=Xenopus tro... [more]
BT3L4_XENLA7.763e-3656.06Transcription factor BTF3 homolog 4 OS=Xenopus lae... [more]
BT3L4_PONAB2.259e-3556.06Transcription factor BTF3 homolog 4 OS=Pongo abeli... [more]
BT3L4_MOUSE2.259e-3556.06Transcription factor BTF3 homolog 4 OS=Mus musculu... [more]
BT3L4_HUMAN2.259e-3556.06Transcription factor BTF3 homolog 4 OS=Homo sapien... [more]
BT3L4_CHICK2.950e-3559.35Transcription factor BTF3 homolog 4 OS=Gallus gall... [more]
BTF3_MOUSE5.563e-3458.06Transcription factor BTF3 OS=Mus musculus GN=Btf3 ... [more]
BTF3_HUMAN5.563e-3458.06Transcription factor BTF3 OS=Homo sapiens GN=BTF3 ... [more]

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Properties
Property NameValue
Genbank descriptionC02014H12SK IF1 Citrus clementina cDNA clone C02014H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289587 ID=CX289587; Name=CX289587; organism=Citrus clementina; type=EST; length=443bp
TCTTCACCAAATTCTTTGTCCCCACACAAAAACCCTAGCTCCAAGATGAA
TGTGGAGAAGCTAATGAAGATGGCCGGTGCAGTTCGCACTGGTGGTAAGG
GTAGTGTGAGAAGAAAGAAGAAGGCTGTTCATAAGACAACAACCACCGAT
GACAAGAGGCTTCAGAGCACCTTGAAGAGAATAGGAGTGAATGCTATTCC
TGCAATTGAGGAAGTTAACATTTTCAAGGATGACGTCGTTATTCAGTTCT
TAAATCCCAAAGTACAAGCTTCAATTGCTGCCAACACATGGGTAGTTAGT
GGTGCCCCACAAACCAAGAAGTTGCAGGATATTCTCCCTGGAATTATCAA
TCAATTGGGGCCAGATAATTTGGACAACCTGAGGAAGTTGGCGGAGCAGT
TTCAGAAGCAAGCACCTAATGCAGGAACTGGTGCACCCACGAC
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