CX289588

Overview
NameCX289588
Unique NameCX289588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14200 contig Ccv1_Contig14200:497..1012. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS4_IPOBA (Chalcone synthase LF4 OS=Ipomoea batatas GN=CHS-LF4 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.762e-36
Identity = 49/103 (47.57%), Postives = 73/103 (70.87%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPSERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVG+DP P+E+PLF+L +A QN  P++   IDG L E G++F L +++P ++ +NIE    +    +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAAVIVGADPTPAEKPLFQLVSAAQNLAPDSCGAIDGHLREVGLTFHLLKDVPSVVSNNIEKCLFEAFNPLGI--SDWNSVFWIAHPGGPAILDQVE 313

HSP 2 Score: 64.6994 bits (156), Expect = 3.762e-36
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R+M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T++ F+ PS      LVG
Sbjct:  149 GLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLIVCSEITVVTFRGPSETHLDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS6_IPOBA (Chalcone synthase DII OS=Ipomoea batatas GN=CHS-DII PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.900e-36
Identity = 49/103 (47.57%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPSERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVG+DP P+E+PLF+L +A Q   PN+   IDG L E G++F L +++P ++ +NIE    +    +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAAVIVGADPTPAEKPLFQLVSAAQTLAPNSCGAIDGHLREVGLTFHLLKDVPSVVSNNIEKCLFEAFNPLGI--SDWNSVFWIAHPGGPAILDQVE 313

HSP 2 Score: 64.6994 bits (156), Expect = 4.900e-36
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R+M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T++ F+ PS      LVG
Sbjct:  149 GLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLIVCSEITVVTFRGPSETHLDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS2_IPOBA (Chalcone synthase LF2 OS=Ipomoea batatas GN=CHS-LF2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.900e-36
Identity = 48/103 (46.60%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPSERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVG+DP P+E+PLF+L +A Q   P++   IDG L E G++F L +++P ++ +NIE    +    +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAAVIVGADPTPAEKPLFQLVSAAQTLAPDSCGAIDGHLREVGLTFHLLKDVPSVVSNNIEKCLFEAFNPLGI--SDWNSVFWIAHPGGPAILDQVE 313

HSP 2 Score: 66.6254 bits (161), Expect = 4.900e-36
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GLSP  +R+M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T++ F+ PS      LVG
Sbjct:  149 GLSPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLIVCSEITVVTFRGPSETHLDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS8_IPOBA (Chalcone synthase DIV OS=Ipomoea batatas GN=CHS-DIV PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.900e-36
Identity = 49/103 (47.57%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPSERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVG+DP P+E+PLF+L +A Q   PN+   IDG L E G++F L +++P ++ +NIE    +    +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAAVIVGADPTPAEKPLFQLVSAAQTLAPNSCGAIDGHLREVGLTFHLLKDVPSVVSNNIEKCLFEAFNPLGI--SDWNSVFWIAHPGGPAILDQVE 313

HSP 2 Score: 64.6994 bits (156), Expect = 4.900e-36
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R+M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T++ F+ PS      LVG
Sbjct:  149 GLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLIVCSEITVVTFRGPSETHLDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS6_SOYBN (Chalcone synthase 6 OS=Glycine max GN=CHS6 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.083e-35
Identity = 52/103 (50.49%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPSERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDP+P+E+PLFEL    Q  LP++E  IDG L E G++F L +++P +I  NI+    +    +G   +DYN +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAAVIVGSDPLPAEKPLFELVWTAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIQKALVEAFQPLGI--DDYNSIFWIAHPGGPAILDQVE 313

HSP 2 Score: 61.6178 bits (148), Expect = 1.083e-35
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS      LVG
Sbjct:  149 GLRPSVKRYMMYQQGCFAGGTVLRLAKDLAENNTGARVLVVCSEITAVTFRGPSDTHLDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS7_IPOBA (Chalcone synthase DIII OS=Ipomoea batatas GN=CHS-DIII PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.838e-35
Identity = 48/103 (46.60%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPSERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVG+DP P+E+PLF+L +A Q   P++   IDG L E G++F L +++P ++ +NIE    +    +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAAVIVGADPTPAEKPLFQLVSAAQTLAPDSCGAIDGHLREVGLTFHLLKDVPSVVSNNIEKCLFEAFNPLGI--SDWNSVFWIAHPGGPAILDQVE 313

HSP 2 Score: 64.6994 bits (156), Expect = 1.838e-35
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R+M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T++ F+ PS      LVG
Sbjct:  149 GLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLIVCSEITVVTFRGPSETHLDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHSA_PETHY (Chalcone synthase A OS=Petunia hybrida GN=CHSA PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.838e-35
Identity = 53/104 (50.96%), Postives = 73/104 (70.19%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGAGA+I+GSDP+P  ERPLFEL +A Q  LP++   IDG L E G++F L +++P +I  NIE    +    +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAGAIIIGSDPIPGVERPLFELVSAAQTLLPDSHGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLEEAFKPLGI--SDWNSLFWIAHPGGPAILDQVE 314

HSP 2 Score: 61.2326 bits (147), Expect = 1.838e-35
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R+M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ P+      LVG
Sbjct:  149 GLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPNDTHLDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHSD_IPONI (Chalcone synthase D OS=Ipomoea nil GN=CHSD PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.838e-35
Identity = 50/103 (48.54%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPSERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVGSDP P+E+PLF+L +A Q   P++   IDG L E G++F L +++P I+ +NIE    +    +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAAIIVGSDPTPAEKPLFQLVSAAQTLAPDSCGAIDGHLREVGLTFHLLKDVPSIVSNNIEKCLSEAFNPLGI--SDWNSIFWIAHPGGPAILDQVE 313

HSP 2 Score: 62.003 bits (149), Expect = 1.838e-35
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R+M+Y  GC  G + LRVAKD+AENN  +RVL+  SE T++ F+ P+      LVG
Sbjct:  149 GLRPSVKRLMMYQQGCFAGGTVLRVAKDLAENNKAARVLVVCSEITVVTFRGPNETHLDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS3_IPOBA (Chalcone synthase LF3 OS=Ipomoea batatas GN=CHS-LF3 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.838e-35
Identity = 48/103 (46.60%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPSERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVG+DP P+E+PLF+L +A Q   P++   IDG L E G++F L +++P ++ +NIE    +    +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAAVIVGADPTPAEKPLFQLVSAAQTLAPDSCGAIDGHLREVGLTFHLLKDVPSVVSNNIEKCLFEAFNPLGI--SDWNSVFWIAHPGGPAILDQVE 313

HSP 2 Score: 64.6994 bits (156), Expect = 1.838e-35
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R+M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T++ F+ PS      LVG
Sbjct:  149 GLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLIVCSEITVVTFRGPSEAHLDSLVG 211
[Close]
BLAST of CX289588 vs. ExPASy Swiss-Prot
Match: CHS1_IPOBA (Chalcone synthase LF1 OS=Ipomoea batatas GN=CHS-LF1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.394e-35
Identity = 48/103 (46.60%), Postives = 71/103 (68.93%), Query Frame = 1 
Query:  208 ALFGDGAGAMIVGSDPVPSERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAGHPGGPAILNKLE 516
            ALFGDGA A+IVG+DP P+E+PLF+L +A Q   PN+   IDG L E G++F L +++P ++ + IE    +    +G   +D+N +FW  HPGGPAIL+++E
Sbjct:  213 ALFGDGAAAVIVGADPTPAEKPLFQLVSAAQTLAPNSCGAIDGHLREVGLTFHLLKDVPSVVSNKIEKCLFEAFNPLGI--SDWNSVFWIAHPGGPAILDQVE 313

HSP 2 Score: 64.6994 bits (156), Expect = 2.394e-35
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 3 
Query:   15 GLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVG 203
            GL P  +R+M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T++ F+ PS      LVG
Sbjct:  149 GLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLIVCSEITVVTFRGPSETHLDSLVG 211
The following BLAST results are available for this feature:
BLAST of CX289588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHS4_IPOBA3.762e-3647.57Chalcone synthase LF4 OS=Ipomoea batatas GN=CHS-LF... [more]
CHS6_IPOBA4.900e-3647.57Chalcone synthase DII OS=Ipomoea batatas GN=CHS-DI... [more]
CHS2_IPOBA4.900e-3646.60Chalcone synthase LF2 OS=Ipomoea batatas GN=CHS-LF... [more]
CHS8_IPOBA4.900e-3647.57Chalcone synthase DIV OS=Ipomoea batatas GN=CHS-DI... [more]
CHS6_SOYBN1.083e-3550.49Chalcone synthase 6 OS=Glycine max GN=CHS6 PE=3 SV... [more]
CHS7_IPOBA1.838e-3546.60Chalcone synthase DIII OS=Ipomoea batatas GN=CHS-D... [more]
CHSA_PETHY1.838e-3550.96Chalcone synthase A OS=Petunia hybrida GN=CHSA PE=... [more]
CHSD_IPONI1.838e-3548.54Chalcone synthase D OS=Ipomoea nil GN=CHSD PE=2 SV... [more]
CHS3_IPOBA1.838e-3546.60Chalcone synthase LF3 OS=Ipomoea batatas GN=CHS-LF... [more]
CHS1_IPOBA2.394e-3546.60Chalcone synthase LF1 OS=Ipomoea batatas GN=CHS-LF... [more]

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Properties
Property NameValue
Genbank descriptionC02015A01SK IF1 Citrus clementina cDNA clone C02015A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289588 ID=CX289588; Name=CX289588; organism=Citrus clementina; type=EST; length=517bp
AATTCGGCACGAGGGGACTCAGTCCTGAGACTCAGCGTGTCATGCTCTAC
TTCATGGGCTGCTCTGGTGGAGTTTCTGGCCTGCGTGTGGCGAAGGACAT
TGCTGAAAACAATCCTGGAAGCAGAGTTCTGCTAGCTACTTCCGAAACTA
CAATTATTGGGTTCAAGCCACCAAGTGCAGAAAGGCCATATGACTTGGTT
GGCAGTCGCACTCTTTGGTGATGGTGCTGGAGCCATGATCGTGGGCTCAG
ACCCGGTTCCCAGTGAAAGGCCTCTCTTTGAGCTGCACACAGCAATCCAG
AACTTCTTGCCAAATACCGAAAAAACAATAGACGGGAGGCTTACGGAAGA
GGGGATTAGCTTTAAGCTGGCAAGAGAGCTGCCTCAGATAATCGAGGATA
ACATTGAAGGATTCTGTGGCAAGCTAATGGGCAATATTGGATTTACCAAC
AATGATTACAACAAGATGTTTTGGGCAGGTCATCCCGGAGGGCCTGCGAT
ATTGAATAAGTTGGAAA
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