CX289594

Overview
NameCX289594
Unique NameCX289594
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length451
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH2_BOVIN (Peptidyl-tRNA hydrolase 2, mitochondrial OS=Bos taurus GN=PTRH2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.508e-26
Identity = 53/108 (49.07%), Postives = 76/108 (70.37%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 324
            VR DLKMG GK+A+QC+HAA   Y ++ + +  LL++WE CGQPK+VV   +++ + +L   A+  GL   ++ DAGRTQ++ GS+TVL IGPGP  L+D VTG  +L
Sbjct:   71 VRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPELLKEWEYCGQPKVVVKAPDEETLVELLTHAKVLGLTVSLIQDAGRTQIAPGSRTVLGIGPGPADLIDKVTGHLKL 178          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH2_HUMAN (Peptidyl-tRNA hydrolase 2, mitochondrial OS=Homo sapiens GN=PTRH2 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.021e-25
Identity = 52/108 (48.15%), Postives = 75/108 (69.44%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 324
            VR DLKMG GK+A+QC+HAA   Y ++ + +  +L++WE CGQPK+VV   +++ +  L   A+  GL   ++ DAGRTQ++ GS+TVL IGPGP  L+D VTG  +L
Sbjct:   71 VRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKAPDEETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKL 178          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH2_MOUSE (Peptidyl-tRNA hydrolase 2, mitochondrial OS=Mus musculus GN=Ptrh2 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.879e-25
Identity = 52/108 (48.15%), Postives = 72/108 (66.67%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 324
            VR DLKMG GK+A+QC+HAA   Y +  +    +L++WE CGQPK+VV   ++  + +L   A+  GL   ++ DAGRTQ+  GS+TVL IGPGP  L+D VTG  +L
Sbjct:   73 VRTDLKMGKGKVAAQCSHAAVSAYKQTQRRSPQVLKEWEYCGQPKVVVKAPDEDTLIQLLTHAKTLGLTVSLIQDAGRTQIEPGSRTVLGIGPGPVELIDEVTGHLKL 180          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH2_DROME (Probable peptidyl-tRNA hydrolase 2 OS=Drosophila melanogaster GN=CG1307 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.380e-22
Identity = 53/109 (48.62%), Postives = 68/109 (62.39%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            VR DLKMG GKIA+QC H A G Y   +     LLR WE CG  KI V  +++ E+  + + AE   L T ++ DAGRTQ+ A SKTVLA+GP   + +D VTG  +LL
Sbjct:   78 VRNDLKMGKGKIAAQCGHGAVGAYQRAVVRTPRLLRSWENCGCAKIAVRVESEAELMAIKKEAERQQLNTCLIRDAGRTQIEANSKTVLAVGPAAAADIDRVTGHLKLL 186          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_SULTO (Peptidyl-tRNA hydrolase OS=Sulfolobus tokodaii GN=pth PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.992e-21
Identity = 53/113 (46.90%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSDRHL----LRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            VR DL MG GKIA+Q AHAA  +  +++ S   L    L KW + GQPKIVV   +  E+NK +E A    LPT ++ DAG+TQ+  G+ T + IGP P  LVD +TG  +LL
Sbjct:    9 VRTDLDMGKGKIAAQVAHAAVSLVLDILNSSNSLWKEWLYKWLEEGQPKIVVKVPSLDELNKRYEKAIELNLPTTIIQDAGKTQIEPGTITCIGIGPAPVELVDKITGDLKLL 121          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_PYRFU (Peptidyl-tRNA hydrolase OS=Pyrococcus furiosus GN=pth PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.202e-20
Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = 1
Query:    4 RQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            R DLK+  GK+A Q AH A     E  +  R     W + GQ K+VV  +N++E+ KL   AE  GLPT ++ DAG T++  G+ TVLAIGPGP+ +VD VTG  +LL
Sbjct:   12 RSDLKLSKGKLAVQVAHGAVTAAFEAYKKKREWFEAWFREGQKKVVVKAQNEEELFKLKSEAEKLGLPTALIRDAGLTEIPPGTITVLAIGPGPEEVVDKVTGHLKLL 119          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH2_SCHPO (Probable peptidyl-tRNA hydrolase 2 OS=Schizosaccharomyces pombe GN=SPAC19A8.14 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.202e-20
Identity = 51/108 (47.22%), Postives = 67/108 (62.04%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 324
            VR DL M  GKIA+QCAHAA   Y      D  L+R WE  GQ KI +  + ++ +  L   A + GL   V+ DAGRTQ+++GS TVL IGPGP S+++ VTG  +L
Sbjct:   97 VRTDLGMTKGKIAAQCAHAALACYKIASAVDPDLVRIWENAGQAKITLQAQTEETLELLQAQAMSLGLCARVIHDAGRTQIASGSATVLGIGPGPVSVINEVTGSLKL 204          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_SULAC (Peptidyl-tRNA hydrolase OS=Sulfolobus acidocaldarius GN=pth PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.757e-20
Identity = 49/114 (42.98%), Postives = 70/114 (61.40%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSD-----RHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            VR DL MG GKIA+Q AHAA  +  E++Q       +  L  W   GQPKIV+  KN  E+ + +  A  +GLP  ++ DAG+TQ+  G+ T   IGPGP+ ++D++TG  +LL
Sbjct:    7 VRTDLDMGKGKIAAQVAHAAVSLVLEIVQKRSKAEWKEWLEMWINQGQPKIVLKVKNLDELLEKYNKALQSGLPATIIQDAGKTQIEPGTITCAGIGPGPEEMIDNITGDLKLL 120          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_METS5 (Peptidyl-tRNA hydrolase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=pth PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.408e-20
Identity = 51/111 (45.95%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQ--SDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            VR D+ MG GKIA+Q AHAA  +  + M   S R  L  W   GQPK+VV   + +++    + A + GLPT V++DAGRTQV  G+ T   IGPGP  L+D +TG  +LL
Sbjct:    7 VRTDINMGKGKIAAQVAHAAVSLVLDCMSRSSWRDWLDSWLHEGQPKVVVKVSSLEDLLSRVDKARSQGLPTTVISDAGRTQVEPGTVTCAGIGPGPDDLIDKITGDLKLL 117          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_SULSO (Peptidyl-tRNA hydrolase OS=Sulfolobus solfataricus GN=pth PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.180e-19
Identity = 49/113 (43.36%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSD----RHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            VR D+KMG GKIA+Q AHAA  +   ++ S+    +  L +W   GQPKI+V   +  E+    + AE   LP  ++ DAG+TQ+  G+ T L IGP P++LVDS+TG  +LL
Sbjct:    8 VRSDIKMGKGKIAAQVAHAAVTLVVSIINSNNLRWKEWLNEWLHQGQPKIIVKVNSLDEIISRAKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLVDSITGDLKLL 120          
The following BLAST results are available for this feature:
BLAST of CX289594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
PTH2_BOVIN3.508e-2649.07Peptidyl-tRNA hydrolase 2, mitochondrial OS=Bos ta... [more]
PTH2_HUMAN1.021e-2548.15Peptidyl-tRNA hydrolase 2, mitochondrial OS=Homo s... [more]
PTH2_MOUSE3.879e-2548.15Peptidyl-tRNA hydrolase 2, mitochondrial OS=Mus mu... [more]
PTH2_DROME1.380e-2248.62Probable peptidyl-tRNA hydrolase 2 OS=Drosophila m... [more]
PTH_SULTO1.992e-2146.90Peptidyl-tRNA hydrolase OS=Sulfolobus tokodaii GN=... [more]
PTH_PYRFU2.202e-2046.30Peptidyl-tRNA hydrolase OS=Pyrococcus furiosus GN=... [more]
PTH2_SCHPO2.202e-2047.22Probable peptidyl-tRNA hydrolase 2 OS=Schizosaccha... [more]
PTH_SULAC3.757e-2042.98Peptidyl-tRNA hydrolase OS=Sulfolobus acidocaldari... [more]
PTH_METS56.408e-2045.95Peptidyl-tRNA hydrolase OS=Metallosphaera sedula (... [more]
PTH_SULSO3.180e-1943.36Peptidyl-tRNA hydrolase OS=Sulfolobus solfataricus... [more]

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Properties
Property NameValue
Genbank descriptionC02015A08SK IF1 Citrus clementina cDNA clone C02015A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289594 ID=CX289594; Name=CX289594; organism=Citrus clementina; type=EST; length=451bp
GTTAGGCAAGACCTGAAGATGGGGAGTGGAAAGATTGCATCACAATGTGC
CCATGCAGCCACTGGGATGTATGCAGAACTAATGCAAAGTGACCGGCACC
TTCTGAGAAAATGGGAGCAATGTGGGCAGCCCAAGATAGTTGTTACGTGC
AAGAATCAACAAGAAATGAATAAGCTGTGGGAAGTAGCTGAAAACACGGG
CCTTCCAACTTTTGTTGTTGCGGATGCTGGACGGACACAGGTTTCAGCTG
GGTCGAAGACGGTTCTTGCCATCGGACCTGGACCCAAATCTTTGGTGGAT
TCTGTGACAGGGAAACAGCGCCTGCTCTAGTTATGCTTAAGAATGGAGGA
CTTTTTGCTTAAAATTTCCCGGATGACAATGTTAAAAGATCAAGATTACC
AACAAAATCTTCTTGACTCTTGGTTTCATTTGCCAGGCAGCTTTCATATT
C
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