CX289595

Overview
NameCX289595
Unique NameCX289595
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length616
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289595 vs. ExPASy Swiss-Prot
Match: ERV14_YEAST (ER-derived vesicles protein ERV14 OS=Saccharomyces cerevisiae GN=ERV14 PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 6.138e-17
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 2
Query:  251 ADLEFDYINPYDSSSRINKVVLPEFITEGALCVFFLITGHWFMSLLCVPYLYYNVRLYTQRQHLVDVTEIFNQLHWEKKQRLFKLAYLIFLLFLSIFWMIWCALED 568
            ADLE DYINP +  S++NK++ PE    GAL + FL+ G+WF+ LL +P L YN+     +  L+D TEIF  L   K++   KL + + + F  ++ MI   + +
Sbjct:   28 ADLEADYINPIELCSKVNKLITPEAALHGALSLLFLLNGYWFVFLLNLPVLAYNLNKIYNKVQLLDATEIFRTLGKHKRESFLKLGFHLLMFFFYLYRMIMALIAE 133          
BLAST of CX289595 vs. ExPASy Swiss-Prot
Match: ERV15_YEAST (ER-derived vesicles protein ERV15 OS=Saccharomyces cerevisiae GN=ERV15 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.851e-14
Identity = 39/112 (34.82%), Postives = 61/112 (54.46%), Query Frame = 2
Query:  233 YQLMCLADLEFDYINPYDSSSRINKVVLPEFITEGALCVFFLITGHWFMSLLCVPYLYYNVRLYTQRQHLVDVTEIFNQLHWEKKQRLFKLAYLIFLLFLSIFWMIWCALED 568
            Y  +   DLE DYIN  +   R+N++ +PE I +  +   FL  G+WF+ LL VP L YN     ++ HL+D T+IF +L   K +   KL + + + F   + M+   LE+
Sbjct:   25 YFTILYGDLEADYINSIELCKRVNRLSVPEAILQAFISALFLFNGYWFVFLLNVPVLAYNASKVYKKTHLLDATDIFRKLGRCKIECFLKLGFYLLIFFFYFYRMVTALLEN 136          
BLAST of CX289595 vs. ExPASy Swiss-Prot
Match: ERV14_SCHPO (ER-derived vesicles protein erv14 OS=Schizosaccharomyces pombe GN=erv14 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13
Identity = 33/114 (28.95%), Postives = 63/114 (55.26%), Query Frame = 2
Query:  236 QLMCL---ADLEFDYINPYDSSSRINKVVLPEFITEGALCVFFLITGHWFMSLLCVPYLYYNVRLYTQRQHLVDVTEIFNQLHWEKKQRLFKLAYLIFLLFLSIFWMIWCALED 568
            Q+ C+   +DLE DYINP D  +++N +V+PE I+   + +  L+   W + L  +P L ++      + H++D TEIF QL   K+    K+ + + + F  ++ M+   +++
Sbjct:   23 QIFCVIMFSDLEMDYINPIDLCNKLNDLVMPEIISHTLVTLLLLLGKKWLLFLANLPLLVFHANQVIHKTHILDATEIFRQLGRHKRDNFIKVTFYLIMFFTLLYCMVMSLIQE 136          
BLAST of CX289595 vs. ExPASy Swiss-Prot
Match: CNIH4_BOVIN (Protein cornichon homolog 4 OS=Bos taurus GN=CNIH4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 40/118 (33.90%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  233 YQLMCLADLEFDYINPYDSSSRINKVVLPEFITEGALCVFFLITGHWFMSLLCVPYLYYNVRLY----TQRQHLVDVTEIFN--QLHWEKKQRLFKLAYLIFLLFLSIFWMIWCALED 568
            Y ++ L+DLE DYIN     S++NK V+PE +    + V  LI+ HWF+ LL +P   +N+  Y    +    + D TEI N  QL    K+ + KL + +   F+ ++ MI   + D
Sbjct:   22 YFIITLSDLECDYINARSCCSKLNKWVIPELVGHTLVTVLMLISLHWFIFLLNLPVAAWNIYRYIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIKLGFHLLCFFMYLYSMILALIND 139          
BLAST of CX289595 vs. ExPASy Swiss-Prot
Match: YEY5_SCHPO (Uncharacterized protein C2C4.05 OS=Schizosaccharomyces pombe GN=SPAC2C4.05 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 35/106 (33.02%), Postives = 55/106 (51.89%), Query Frame = 2
Query:  233 YQLMCLADLEFDYINPYDSSSRINKVVLPEFITEGALCVFFLITGHWFMSLLCVPYLYYNVRLYTQRQHLVDVTEIFNQLHWEKKQRLFKLAYLIFLLFLSIFWMI 550
            Y  +  +DL+ D+INP D S ++N  VLPE   +    +  L++G W   LL VP L +N ++     H+ D T IF  +   +K+  FKLA      F+ +F  +
Sbjct:   23 YFTVMYSDLKDDFINPIDLSRKLNWYVLPEMGFQAFSALLLLLSGAWITFLLNVPMLAWNAKMIMSNTHMHDSTTIFKDVSSRQKRSFFKLACFAVFFFVYLFLFV 128          
BLAST of CX289595 vs. ExPASy Swiss-Prot
Match: CNIH4_PONAB (Protein cornichon homolog 4 OS=Pongo abelii GN=CNIH4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 40/118 (33.90%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  233 YQLMCLADLEFDYINPYDSSSRINKVVLPEFITEGALCVFFLITGHWFMSLLCVPYLYYNVRLY----TQRQHLVDVTEIFN--QLHWEKKQRLFKLAYLIFLLFLSIFWMIWCALED 568
            Y ++ L+DLE DYIN     S++NK V+PE I    + V  L++ HWF+ LL +P   +N+  Y    +    + D TEI N  QL    K+ + KL + +   F+ ++ MI   + D
Sbjct:   22 YFIITLSDLECDYINARSCCSKLNKWVIPELIGHTIVTVLLLMSLHWFIFLLNLPVATWNIYRYIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIKLGFHLLCFFMYLYSMILALIND 139          
BLAST of CX289595 vs. ExPASy Swiss-Prot
Match: CNIH4_HUMAN (Protein cornichon homolog 4 OS=Homo sapiens GN=CNIH4 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 40/118 (33.90%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  233 YQLMCLADLEFDYINPYDSSSRINKVVLPEFITEGALCVFFLITGHWFMSLLCVPYLYYNVRLY----TQRQHLVDVTEIFN--QLHWEKKQRLFKLAYLIFLLFLSIFWMIWCALED 568
            Y ++ L+DLE DYIN     S++NK V+PE I    + V  L++ HWF+ LL +P   +N+  Y    +    + D TEI N  QL    K+ + KL + +   F+ ++ MI   + D
Sbjct:   22 YFIITLSDLECDYINARSCCSKLNKWVIPELIGHTIVTVLLLMSLHWFIFLLNLPVATWNIYRYIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIKLGFHLLCFFMYLYSMILALIND 139          
BLAST of CX289595 vs. ExPASy Swiss-Prot
Match: CNIH4_MOUSE (Protein cornichon homolog 4 OS=Mus musculus GN=Cnih4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 38/118 (32.20%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  233 YQLMCLADLEFDYINPYDSSSRINKVVLPEFITEGALCVFFLITGHWFMSLLCVPYLYYNVRLY----TQRQHLVDVTEIFN--QLHWEKKQRLFKLAYLIFLLFLSIFWMIWCALED 568
            Y ++ L+DLE DYIN     S++NK V+PE +    + V  L++ HWF+ LL +P   +N+  +    +    + D TEI N  QL    K+ + KL + +   F+ ++ MI   + D
Sbjct:   22 YFIITLSDLECDYINARSCCSKLNKWVIPELVGHTIVTVLMLVSLHWFIFLLNLPVATWNIYRFIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIKLGFYLLCFFMYLYSMILALIND 139          
The following BLAST results are available for this feature:
BLAST of CX289595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
ERV14_YEAST6.138e-1738.68ER-derived vesicles protein ERV14 OS=Saccharomyces... [more]
ERV15_YEAST2.851e-1434.82ER-derived vesicles protein ERV15 OS=Saccharomyces... [more]
ERV14_SCHPO3.152e-1328.95ER-derived vesicles protein erv14 OS=Schizosacchar... [more]
CNIH4_BOVIN2.951e-1133.90Protein cornichon homolog 4 OS=Bos taurus GN=CNIH4... [more]
YEY5_SCHPO5.033e-1133.02Uncharacterized protein C2C4.05 OS=Schizosaccharom... [more]
CNIH4_PONAB5.033e-1133.90Protein cornichon homolog 4 OS=Pongo abelii GN=CNI... [more]
CNIH4_HUMAN5.033e-1133.90Protein cornichon homolog 4 OS=Homo sapiens GN=CNI... [more]
CNIH4_MOUSE6.573e-1132.20Protein cornichon homolog 4 OS=Mus musculus GN=Cni... [more]
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Properties
Property NameValue
Genbank descriptionC02015A09SK IF1 Citrus clementina cDNA clone C02015A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289595 ID=CX289595; Name=CX289595; organism=Citrus clementina; type=EST; length=616bp
GTCCGAGCCATCTCCCGATCCTGTACTTCCCGTGCGCACCATTTCAAGGC
GCGCGTTAGTCAGAAACATCGCCGTTAATTGCTACTGTGCGCACTTCTGC
TCTTCCAGCAATTATTTATTTATTTATTTGGGAAAAGGCTGAAGAAAGTG
AAGGAAGGGGAGGAGCATGGGGGATCTGTTCATATGGCTGGCCTCTTTCT
TCATTCTGATAGCACTCCTCGTTCTCGTCGTTTACCAGCTCATGTGCTTA
GCGGATCTAGAGTTTGATTATATCAACCCTTATGACTCCTCCTCTCGAAT
TAACAAAGTCGTTTTGCCAGAATTTATCACGGAAGGGGCTCTTTGTGTCT
TCTTTCTGATAACAGGGCATTGGTTTATGTCACTCTTGTGTGTTCCGTAC
CTCTACTACAATGTCAGACTTTACACACAGAGACAACACCTGGTAGATGT
AACTGAGATATTCAACCAGCTTCATTGGGAAAAGAAGCAACGGCTTTTCA
AACTTGCGTATCTCATATTTCTCCTCTTCCTCAGCATATTCTGGATGATT
TGGTGCGCTTTGGAAGACCACGATGAATGATTGGCGATGAATGCTTACTT
CACTGGACTTCACTGG
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