CX289655

Overview
NameCX289655
Unique NameCX289655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3442 contig Ccv1_Contig3442:161..574. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX289655 vs. ExPASy Swiss-Prot
Match: Y4141_ARATH (Uncharacterized protein At4g14100 OS=Arabidopsis thaliana GN=At4g14100 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 2.379e-57
Identity = 97/133 (72.93%), Postives = 108/133 (81.20%), Query Frame = 2 
Query:   14 VDLWYDWPNGRNFNIIQNQLGKLTYDLEWDNGTSYIYTLDANKECRVLHFPVGILRPSWLDGAEYLGQKYVDKFLCNVWTKVDFIWYYEDVVTKRPVHWAFYTGYTADVITFEGGAVLEDPKWQAPVYCFGNE 412
            +DLWYDW NGRNFNIIQ QLG +TYDLEW+NGTS+ YTLD +K CR     VGILRP+WLDGA+YLGQ+ V  FLCNVW KVDFIWYYEDV TKRPV W FYTG  A ++T+E GAVLED KWQAPVYCF  E
Sbjct:   52 IDLWYDWTNGRNFNIIQEQLGGITYDLEWNNGTSFFYTLDESKSCRSGQLEVGILRPNWLDGAKYLGQQNVSGFLCNVWEKVDFIWYYEDVETKRPVQWIFYTGREAHIMTYEVGAVLEDEKWQAPVYCFNKE 184
The following BLAST results are available for this feature:
BLAST of CX289655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4141_ARATH2.379e-5772.93Uncharacterized protein At4g14100 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC02015G03SK IF1 Citrus clementina cDNA clone C02015G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289655 ID=CX289655; Name=CX289655; organism=Citrus clementina; type=EST; length=414bp
CTGCAGGCAGAAAGTGGACCTCTGGTACGACTGGCCCAACGGCCGCAACT
TCAACATAATCCAGAACCAGCTCGGCAAGCTCACGTATGATCTTGAATGG
GACAACGGCACCTCTTACATTTACACTCTGGACGCCAACAAGGAATGCAG
AGTCTTGCATTTCCCCGTCGGCATCCTCCGCCCCAGTTGGCTCGACGGCG
CTGAGTATCTTGGCCAGAAGTACGTGGACAAGTTTCTTTGTAATGTGTGG
ACCAAAGTTGATTTCATTTGGTACTACGAAGATGTCGTCACTAAGAGACC
TGTTCATTGGGCCTTCTACACAGGGTACACAGCTGATGTGATAACATTCG
AAGGGGGAGCAGTTCTCGAGGATCCCAAATGGCAGGCTCCTGTTTATTGT
TTTGGGAATGAGGG
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