CX289668

Overview
NameCX289668
Unique NameCX289668
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length422
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289668 vs. ExPASy Swiss-Prot
Match: TRNH1_ARATH (Tropinone reductase homolog At1g07440 OS=Arabidopsis thaliana GN=At1g07440 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.060e-41
Identity = 83/140 (59.29%), Postives = 106/140 (75.71%), Query Frame = 3
Query:    3 AIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNL 422
            A++HTC+RN+ EL+  L +W+ KGF+VTGSVCD S R +REKL++TV+S+F GKL+ILINN      KPT+D TAED S   STN ES +HLSQLAHPL KASG G+I+F+SS+ GV      S+Y A KGA+NQL +NL
Sbjct:   39 AVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGALNQLARNL 178          
BLAST of CX289668 vs. ExPASy Swiss-Prot
Match: TRN1_DATST (Tropinone reductase 1 OS=Datura stramonium GN=TR1 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.172e-40
Identity = 77/140 (55.00%), Postives = 103/140 (73.57%), Query Frame = 3
Query:    3 AIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNL 422
            A V+TCSRN+ ELD  L  W+ KG  V GSVCDL SR +R+KL++TV  +F GKLNIL+NNA +   K   D T +D + +  TNFE+ +HLSQ+A+PL KAS NG+++F+SS+ G   +PSVSLY A KGA+NQ+TK+L
Sbjct:   46 ARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSL 185          
BLAST of CX289668 vs. ExPASy Swiss-Prot
Match: TRNH_DATST (Tropinone reductase homolog OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.595e-40
Identity = 82/140 (58.57%), Postives = 102/140 (72.86%), Query Frame = 3
Query:    3 AIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNL 422
            A V+TCSR+Q +LD  L +W+ KGFKV+G VCD+SS  QR+ L+E+VTS F GKLNILINNA     K   + TAED S +  TNFE+ ++L QLAHPL KASGN SIVF SS  GV  +P  S+Y A KGA+NQ+TK+L
Sbjct:   42 AEVYTCSRSQNDLDECLEKWRRKGFKVSGPVCDVSSISQRQTLMESVTSSFNGKLNILINNAGTTIPKEATNFTAEDYSIIMGTNFEASYNLCQLAHPLLKASGNASIVFNSSAAGVIAVPLSSIYAASKGAINQVTKSL 181          
BLAST of CX289668 vs. ExPASy Swiss-Prot
Match: TRN2_DATST (Tropinone reductase 2 OS=Datura stramonium GN=TR2 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.692e-39
Identity = 80/140 (57.14%), Postives = 101/140 (72.14%), Query Frame = 3
Query:    3 AIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNL 422
            A V+TCSRNQ EL+  L +W++KGFKV  SVCDLSSR +R++L+ TV + F GKLNIL+NNA I   K   D T ED S + S NFE+ +HLS LAHP  KAS  G++VFISSV G   +P  ++YGA KGAM+QLT+ L
Sbjct:   34 ASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCL 173          
BLAST of CX289668 vs. ExPASy Swiss-Prot
Match: TRN2_HYONI (Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.210e-39
Identity = 79/140 (56.43%), Postives = 101/140 (72.14%), Query Frame = 3
Query:    3 AIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIAFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNL 422
            A V+TCSRNQ ELD  L +W++KGF V  SVCDLSSR +RE+ ++TV++ F GKLNIL+NNA I   K   D T ED S + S NFE+ +HLS LAHP  KAS  G++VFISS+ G   +P  ++YGA KGAM+QLT+ L
Sbjct:   34 ASVYTCSRNQKELDECLTQWRSKGFNVEASVCDLSSRSEREEFMKTVSNHFHGKLNILVNNAGIVIYKEAKDYTMEDYSHIMSINFEAAYHLSVLAHPFLKASERGNVVFISSISGASALPYEAVYGATKGAMDQLTRCL 173          
BLAST of CX289668 vs. ExPASy Swiss-Prot
Match: DHRS4_BOVIN (Dehydrogenase/reductase SDR family member 4 OS=Bos taurus GN=DHRS4 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.197e-14
Identity = 48/141 (34.04%), Postives = 72/141 (51.06%), Query Frame = 3
Query:    3 AIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAIA-FVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNL 422
            A V   SR Q  +D  +   K +G  VTG+VC +   E RE+L+ T   +  G ++ILI+NAA++ F    +D+  E    +   N ++   L++   P     G GSIV +SS+      PS+  Y   K A+  LTKNL
Sbjct:   39 AHVVVSSRKQQNVDRAVATLKGEGLSVTGTVCHVGKAEDRERLVATAVKL-HGGVDILISNAAVSPFFGSLMDVPEEVWDKILDVNVKATALLTKAVVPEMAKRGGGSIVIVSSIAAYSPFPSLGPYNVSKTALLGLTKNL 178          
BLAST of CX289668 vs. ExPASy Swiss-Prot
Match: DHRS4_RAT (Dehydrogenase/reductase SDR family member 4 OS=Rattus norvegicus GN=Dhrs4 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.349e-14
Identity = 47/134 (35.07%), Postives = 70/134 (52.24%), Query Frame = 3
Query:   21 SRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAI-AFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKN 419
            SR Q  +D  +   + +G  VTG VC +   E REKL+     + QG ++IL++NAA+  F    +D+T E  + V S N  +   + +   P  +  G GS+V +SSV G    PS+  Y   K A+  LTKN
Sbjct:   45 SRKQQNVDRAVATLQGEGLSVTGVVCHVGKAEDREKLVNMALKLHQG-IDILVSNAAVNPFFGNLMDVTEEVWNKVLSINVTASAMMIKAVVPAMEKRGGGSVVIVSSVAGFVLFPSLGPYNVSKTALLGLTKN 177          
BLAST of CX289668 vs. ExPASy Swiss-Prot
Match: DHRS4_MOUSE (Dehydrogenase/reductase SDR family member 4 OS=Mus musculus GN=Dhrs4 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.083e-13
Identity = 49/140 (35.00%), Postives = 70/140 (50.00%), Query Frame = 3
Query:    3 AIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAI-AFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKN 419
            A V   SR Q  +D  +   + +G  VTG VC +   E REKLI T     +G ++IL++NAA+  F    +D+T E    V S N  +   + +   P  +  G GS+V + SV G    PS+  Y   K A+  LTKN
Sbjct:   39 AHVVVSSRKQQNVDRAVATLQGEGLSVTGIVCHVGKAEDREKLITTALKRHRG-IDILVSNAAVNPFFGNLMDVTEEVWDKVLSINVTATAMMIKAVVPEMEKRGGGSVVIVGSVAGFTRFPSLGPYNVSKTALLGLTKN 177          
BLAST of CX289668 vs. ExPASy Swiss-Prot
Match: DHRS4_PIG (Dehydrogenase/reductase SDR family member 4 OS=Sus scrofa GN=DHRS4 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.553e-13
Identity = 44/141 (31.21%), Postives = 73/141 (51.77%), Query Frame = 3
Query:    3 AIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAI-AFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNL 422
            A V   SR Q  +D  +   + +G  VTG+VC +   E RE+L+    ++  G ++IL++NAA+  F    +D T E    +   N ++   +++   P  +  G GS++ +SSVG     P++  Y   K A+  LTKNL
Sbjct:   39 AHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNL-HGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNL 178          
BLAST of CX289668 vs. ExPASy Swiss-Prot
Match: DHRS4_PONAB (Dehydrogenase/reductase SDR family member 4 OS=Pongo abelii GN=DHRS4 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.928e-12
Identity = 44/141 (31.21%), Postives = 70/141 (49.65%), Query Frame = 3
Query:    3 AIVHTCSRNQIELDARLHEWKNKGFKVTGSVCDLSSREQREKLIETVTSIFQGKLNILINNAAI-AFVKPTVDITAEDMSTVSSTNFESVFHLSQLAHPLFKASGNGSIVFISSVGGVRGIPSVSLYGAYKGAMNQLTKNL 422
            A V   SR Q  +D  +   + +G  VTG+VC +   E RE+L+ T   +  G ++IL++NAA+  F    +D+T E        N ++   +++   P  +  G GS+V +SS+      P  S Y   K A+  LTK L
Sbjct:   39 AHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKL-HGGIDILVSNAAVNPFFGSLMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTL 178          
The following BLAST results are available for this feature:
BLAST of CX289668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
TRNH1_ARATH1.060e-4159.29Tropinone reductase homolog At1g07440 OS=Arabidops... [more]
TRN1_DATST1.172e-4055.00Tropinone reductase 1 OS=Datura stramonium GN=TR1 ... [more]
TRNH_DATST7.595e-4058.57Tropinone reductase homolog OS=Datura stramonium P... [more]
TRN2_DATST1.692e-3957.14Tropinone reductase 2 OS=Datura stramonium GN=TR2 ... [more]
TRN2_HYONI2.210e-3956.43Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 P... [more]
DHRS4_BOVIN4.197e-1434.04Dehydrogenase/reductase SDR family member 4 OS=Bos... [more]
DHRS4_RAT9.349e-1435.07Dehydrogenase/reductase SDR family member 4 OS=Rat... [more]
DHRS4_MOUSE2.083e-1335.00Dehydrogenase/reductase SDR family member 4 OS=Mus... [more]
DHRS4_PIG3.553e-1331.21Dehydrogenase/reductase SDR family member 4 OS=Sus... [more]
DHRS4_PONAB3.928e-1231.21Dehydrogenase/reductase SDR family member 4 OS=Pon... [more]

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Properties
Property NameValue
Genbank descriptionC02015H04SK IF1 Citrus clementina cDNA clone C02015H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289668 ID=CX289668; Name=CX289668; organism=Citrus clementina; type=EST; length=422bp
GAGCAATTGTTCACACATGTTCACGTAATCAAATTGAGCTCGATGCACGT
TTACATGAATGGAAAAACAAAGGGTTCAAAGTAACGGGGTCAGTATGTGA
CCTGTCATCCCGCGAACAGCGTGAGAAGCTAATAGAGACTGTCACCTCCA
TCTTTCAGGGGAAGCTCAACATTCTTATAAACAATGCTGCAATAGCTTTC
GTAAAACCAACGGTGGATATTACAGCTGAGGACATGTCAACTGTAAGCAG
CACAAATTTCGAGTCTGTTTTTCATCTGTCTCAACTAGCACATCCTCTGT
TTAAAGCATCAGGGAATGGAAGTATCGTATTTATTTCCTCTGTTGGGGGC
GTTAGAGGAATACCTTCTGTTTCTCTGTATGGTGCATACAAAGGAGCCAT
GAATCAACTAACGAAGAATTTG
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