CX289750

Overview
NameCX289750
Unique NameCX289750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289750 vs. ExPASy Swiss-Prot
Match: COB22_ARATH (Coatomer subunit beta'-2 OS=Arabidopsis thaliana GN=At1g52360 PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.290e-76
Identity = 147/212 (69.34%), Postives = 167/212 (78.77%), Query Frame = 3
Query:   42 DAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDYVNHADKSYMTLVEAFRHMQIEEEDTLENGDLDH-----------XXXXXXXXXXXXXXXXXXXXXXXPVVVDADSTDGAVLVNGNEAEEQWGTNN 644
            DAEG++KLA+LAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVA+WRKDL KVN KAAESLADPEEYSNLF+DWQVAL+VE+KA  TRGV+  A+DY +HADKS MTLVEAFR++Q+EEE++LENGD+DH                                    +VD DSTDGAVLVNG+EA+E+WGTNN
Sbjct:  709 DAEGVTKLATLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVALWRKDLSKVNSKAAESLADPEEYSNLFEDWQVALSVEAKAVETRGVYTGAKDYPSHADKSSMTLVEAFRNLQVEEEESLENGDMDHEEVVAEENGNEQRNEDDVAEHVEEHHEEKEAEEEEGIVDGDSTDGAVLVNGSEADEEWGTNN 920          
BLAST of CX289750 vs. ExPASy Swiss-Prot
Match: COB21_ARATH (Coatomer subunit beta'-1 OS=Arabidopsis thaliana GN=At1g79990 PE=2 SV=2)

HSP 1 Score: 267.314 bits (682), Expect = 4.747e-71
Identity = 138/206 (66.99%), Postives = 158/206 (76.70%), Query Frame = 3
Query:   42 DAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDYVNHADKSYMTLVEAFRHMQIEEEDTLENGDL---------DHXXXXXXXXXXXXXXXXXXXXXXXPVVVDADSTDGAVLVNGNEAEEQW 632
            DA+G+ KLA+LAKEQGKNNVAFLCLFMLG++EDCL LLVESNRIPEAALMARSYLPSKVSEIVA+WR DL K++PKAAESLADPEEY NLF++WQVAL++E++AA TRGVHPPA DY +HAD+ + TLV+AFR MQIEEE  LE GD+         D                         VVVDADSTDGAVLVNGNE+EEQW
Sbjct:  708 DADGMMKLAALAKEQGKNNVAFLCLFMLGQVEDCLHLLVESNRIPEAALMARSYLPSKVSEIVALWRNDLTKISPKAAESLADPEEYPNLFEEWQVALSLENRAAETRGVHPPAGDYCSHADRDHTTLVDAFRIMQIEEEGRLEQGDVLDEVGEEGEDGEEEEEEDRQEESSDGRQQNVEEEAVVVDADSTDGAVLVNGNESEEQW 913          
BLAST of CX289750 vs. ExPASy Swiss-Prot
Match: COB23_ARATH (Coatomer subunit beta'-3 OS=Arabidopsis thaliana GN=At3g15980 PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.605e-69
Identity = 136/195 (69.74%), Postives = 155/195 (79.49%), Query Frame = 3
Query:   42 DAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDYVNHADKSYMTLVEAFRHMQIEEEDTLENGDLDHXXXXXXXXXXXXXXXXXXXXXXXPV---VVDADSTDGAVLVNGNE 617
            DAEG+SKLA LAKEQGKNNVAFLCLF LG+LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVA+WR+DL KVNPKAAESLADPEEYSNLF+DWQVAL+VE+  A TRGV+  AE+Y +HADK  +TLVEAFR++Q+E E++LENG++DH                            VVDADSTDGAVLVNG+E
Sbjct:  709 DAEGVSKLACLAKEQGKNNVAFLCLFTLGRLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVALWREDLSKVNPKAAESLADPEEYSNLFEDWQVALSVEANTAETRGVYTAAENYPSHADKPSITLVEAFRNLQVEAEESLENGNIDHEVAEENGHVENEGDEEEQQEEEVNEEEGVVDADSTDGAVLVNGSE 903          
BLAST of CX289750 vs. ExPASy Swiss-Prot
Match: COB22_ORYSJ (Coatomer subunit beta'-2 OS=Oryza sativa subsp. japonica GN=Os02g0209100 PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.159e-67
Identity = 132/204 (64.71%), Postives = 154/204 (75.49%), Query Frame = 3
Query:   42 DAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDYVNHADKSYMTLVEAFRHMQIEEEDTL--ENGDLDHXXXXXXXXXXXXXXXXXXXXXXXPVVVDAD-STDGAVLVNGNEAEEQWGTNN 644
            DAEG++KL S+AKEQGKNNVAFLC FMLGKLE+CLQLL+ESNRIPEAALM+RSYLPSKV EIV +W+KDLQKVNPKAAESLADP+EY NLF+DWQ+AL VE+  A  RG++PPAE+Y+ HA++   TLVEAF+ M I  E+ L  ENGD  H                        V V+AD STDGAVLVNGN+ EEQWGTNN
Sbjct:  709 DAEGLTKLTSMAKEQGKNNVAFLCFFMLGKLEECLQLLIESNRIPEAALMSRSYLPSKVPEIVTLWKKDLQKVNPKAAESLADPDEYPNLFEDWQIALNVEANVAPKRGIYPPAEEYIIHAERPNETLVEAFKSMHIHLEEVLPDENGDDTH-------EAIEENGVEESQEDAVEVDVEADGSTDGAVLVNGNDTEEQWGTNN 905          
BLAST of CX289750 vs. ExPASy Swiss-Prot
Match: COB23_ORYSJ (Putative coatomer subunit beta'-3 OS=Oryza sativa subsp. japonica GN=Os02g0209000 PE=3 SV=2)

HSP 1 Score: 250.366 bits (638), Expect = 6.005e-66
Identity = 129/204 (63.24%), Postives = 154/204 (75.49%), Query Frame = 3
Query:   42 DAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDYVNHADKSYMTLVEAFRHMQIEEEDTL--ENGDLDHXXXXXXXXXXXXXXXXXXXXXXXPVVVDAD-STDGAVLVNGNEAEEQWGTNN 644
            DAEG++KL S+AKEQGKNNVAFLC FMLGKLE+CLQLL+ESNRIPEAALM+RSYLPSKV EIV +W+KDLQKVNPKAAESLADP EY NLF+DWQ+AL VE+  A  RG++ PA++Y+ HA++   TLVEAF++M+I +E+ L  ENGD  H                        V V+AD STDG VLVNGN+ EEQWGTNN
Sbjct:  709 DAEGLTKLTSMAKEQGKNNVAFLCFFMLGKLEECLQLLIESNRIPEAALMSRSYLPSKVPEIVTLWKKDLQKVNPKAAESLADPNEYPNLFEDWQIALNVEANVAPKRGIYAPAKEYIIHAERPNETLVEAFKNMRIHQEEVLPDENGDDTH-------EAIEENGVEESQEDAVEVDVEADGSTDGTVLVNGNDTEEQWGTNN 905          
BLAST of CX289750 vs. ExPASy Swiss-Prot
Match: COB21_ORYSJ (Coatomer subunit beta'-1 OS=Oryza sativa subsp. japonica GN=Os06g0143900 PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 4.303e-64
Identity = 132/202 (65.35%), Postives = 146/202 (72.28%), Query Frame = 3
Query:   42 DAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDYVNHADKSYMTLVEAFRHMQI----EEEDTL-ENGDLDHXXXXXXXXXXXXXXXXXXXXXXXPVVVDADSTDGAVLVNGNEAEEQW 632
            DAEGI KLAS AKE GKNNVAFLCLFMLGKLEDC+QLL++SNRIPEAALMARSYLPSKVSEIVAIWR DL KVNPKAAESLADP EY NLF+DWQVAL VE   A+ R  +PPA++Y+NHA+KS MTLVEAF+ MQ+    E ED L ENG+ D                         V VDAD  +  VLVNG E EEQW
Sbjct:  709 DAEGIEKLASQAKEHGKNNVAFLCLFMLGKLEDCIQLLIDSNRIPEAALMARSYLPSKVSEIVAIWRNDLSKVNPKAAESLADPSEYPNLFEDWQVALTVEKNVASRRVHYPPADEYLNHAEKSDMTLVEAFKRMQVIEDEETEDALDENGEPDE---------EVLEENKVEESTDEAVEVDADEPEETVLVNGKEGEEQW 901          
BLAST of CX289750 vs. ExPASy Swiss-Prot
Match: COPB2_RAT (Coatomer subunit beta' OS=Rattus norvegicus GN=Copb2 PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 1.888e-27
Identity = 61/117 (52.14%), Postives = 81/117 (69.23%), Query Frame = 3
Query:   42 DAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDY 392
            +A  ++KLA  A+  GKNNVAF+  F+ GKL+ CL+LL+ + R+PEAA +AR+YLPS+VS +V +WR++L KVN KAAESLADP EY NLF   + A  VE     T     PA+ Y
Sbjct:  708 NASMVNKLAEGAERDGKNNVAFMSYFLQGKLDACLELLIRTGRLPEAAFLARTYLPSQVSRVVKLWRENLSKVNQKAAESLADPTEYENLFPGLKEAFVVEEWVKETHADLWPAKQY 824          
BLAST of CX289750 vs. ExPASy Swiss-Prot
Match: COPB2_MOUSE (Coatomer subunit beta' OS=Mus musculus GN=Copb2 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.888e-27
Identity = 61/117 (52.14%), Postives = 81/117 (69.23%), Query Frame = 3
Query:   42 DAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDY 392
            +A  ++KLA  A+  GKNNVAF+  F+ GKL+ CL+LL+ + R+PEAA +AR+YLPS+VS +V +WR++L KVN KAAESLADP EY NLF   + A  VE     T     PA+ Y
Sbjct:  708 NASMVNKLAEGAERDGKNNVAFMSYFLQGKLDACLELLIRTGRLPEAAFLARTYLPSQVSRVVKLWRENLSKVNQKAAESLADPTEYENLFPGLKEAFVVEEWVKETHADLWPAKQY 824          
BLAST of CX289750 vs. ExPASy Swiss-Prot
Match: COPB2_BOVIN (Coatomer subunit beta' OS=Bos taurus GN=COPB2 PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 1.888e-27
Identity = 61/117 (52.14%), Postives = 81/117 (69.23%), Query Frame = 3
Query:   42 DAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDY 392
            +A  ++KLA  A+  GKNNVAF+  F+ GKL+ CL+LL+ + R+PEAA +AR+YLPS+VS +V +WR++L KVN KAAESLADP EY NLF   + A  VE     T     PA+ Y
Sbjct:  708 NASMVNKLAEGAERDGKNNVAFMSYFLQGKLDACLELLIRTGRLPEAAFLARTYLPSQVSRVVKLWRENLSKVNQKAAESLADPTEYENLFPGLKEAFVVEEWVKETHADLWPAKQY 824          
BLAST of CX289750 vs. ExPASy Swiss-Prot
Match: COPB2_PONAB (Coatomer subunit beta' OS=Pongo abelii GN=COPB2 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.221e-27
Identity = 60/117 (51.28%), Postives = 81/117 (69.23%), Query Frame = 3
Query:   42 DAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDY 392
            +A  ++KLA  A+  GKNNVAF+  F+ GK++ CL+LL+ + R+PEAA +AR+YLPS+VS +V +WR++L KVN KAAESLADP EY NLF   + A  VE     T     PA+ Y
Sbjct:  708 NANMVNKLAEGAERDGKNNVAFMSYFLQGKVDACLELLIRTGRLPEAAFLARTYLPSQVSRVVKLWRENLSKVNQKAAESLADPTEYENLFPGLKEAFVVEEWVKETHAELWPAKQY 824          
The following BLAST results are available for this feature:
BLAST of CX289750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
COB22_ARATH1.290e-7669.34Coatomer subunit beta'-2 OS=Arabidopsis thaliana G... [more]
COB21_ARATH4.747e-7166.99Coatomer subunit beta'-1 OS=Arabidopsis thaliana G... [more]
COB23_ARATH2.605e-6969.74Coatomer subunit beta'-3 OS=Arabidopsis thaliana G... [more]
COB22_ORYSJ4.159e-6764.71Coatomer subunit beta'-2 OS=Oryza sativa subsp. ja... [more]
COB23_ORYSJ6.005e-6663.24Putative coatomer subunit beta'-3 OS=Oryza sativa ... [more]
COB21_ORYSJ4.303e-6465.35Coatomer subunit beta'-1 OS=Oryza sativa subsp. ja... [more]
COPB2_RAT1.888e-2752.14Coatomer subunit beta' OS=Rattus norvegicus GN=Cop... [more]
COPB2_MOUSE1.888e-2752.14Coatomer subunit beta' OS=Mus musculus GN=Copb2 PE... [more]
COPB2_BOVIN1.888e-2752.14Coatomer subunit beta' OS=Bos taurus GN=COPB2 PE=1... [more]
COPB2_PONAB3.221e-2751.28Coatomer subunit beta' OS=Pongo abelii GN=COPB2 PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02016G03SK IF1 Citrus clementina cDNA clone C02016G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289750 ID=CX289750; Name=CX289750; organism=Citrus clementina; type=EST; length=644bp
TGGATTTGAGTGGTTTGTTGCTGCTCTATTCTTCTTTAGGAGACGCCGAA
GGGATATCCAAACTTGCTTCTCTAGCTAAAGAGCAAGGAAAGAACAATGT
TGCATTCCTTTGTTTATTTATGTTGGGTAAATTGGAAGACTGCCTCCAGC
TGTTAGTGGAAAGTAATCGGATACCTGAGGCTGCTTTGATGGCAAGATCA
TACCTTCCAAGCAAGGTTTCAGAGATTGTTGCTATTTGGAGAAAAGACCT
CCAAAAGGTGAACCCAAAAGCTGCTGAATCTCTGGCTGATCCTGAAGAGT
ATTCTAATCTATTTGATGATTGGCAAGTTGCTCTTGCTGTTGAGTCCAAA
GCTGCTGCTACCAGGGGTGTACATCCTCCTGCAGAGGACTATGTAAACCA
TGCAGATAAATCATACATGACGCTTGTGGAGGCTTTCAGACACATGCAAA
TTGAAGAAGAGGACACTCTTGAAAATGGAGATCTTGATCATGAGGGTTCC
GAACAAAATGGAGAAGAGAATGCAGAGGAACAGAATGGAGAAGAAGGAAG
CCAAGAGGAGCCTGTCGTAGTGGATGCTGATTCAACAGACGGTGCAGTAC
TCGTTAACGGTAACGAGGCTGAAGAACAGTGGGGTACGAATAAT
back to top