CX289750
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX289750 vs. ExPASy Swiss-Prot
Match: COB22_ARATH (Coatomer subunit beta'-2 OS=Arabidopsis thaliana GN=At1g52360 PE=2 SV=1) HSP 1 Score: 285.804 bits (730), Expect = 1.290e-76 Identity = 147/212 (69.34%), Postives = 167/212 (78.77%), Query Frame = 3 Query: 42 DAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDYVNHADKSYMTLVEAFRHMQIEEEDTLENGDLDH-----------XXXXXXXXXXXXXXXXXXXXXXXPVVVDADSTDGAVLVNGNEAEEQWGTNN 644 DAEG++KLA+LAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVA+WRKDL KVN KAAESLADPEEYSNLF+DWQVAL+VE+KA TRGV+ A+DY +HADKS MTLVEAFR++Q+EEE++LENGD+DH +VD DSTDGAVLVNG+EA+E+WGTNN Sbjct: 709 DAEGVTKLATLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVALWRKDLSKVNSKAAESLADPEEYSNLFEDWQVALSVEAKAVETRGVYTGAKDYPSHADKSSMTLVEAFRNLQVEEEESLENGDMDHEEVVAEENGNEQRNEDDVAEHVEEHHEEKEAEEEEGIVDGDSTDGAVLVNGSEADEEWGTNN 920
BLAST of CX289750 vs. ExPASy Swiss-Prot
Match: COB21_ARATH (Coatomer subunit beta'-1 OS=Arabidopsis thaliana GN=At1g79990 PE=2 SV=2) HSP 1 Score: 267.314 bits (682), Expect = 4.747e-71 Identity = 138/206 (66.99%), Postives = 158/206 (76.70%), Query Frame = 3 Query: 42 DAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDYVNHADKSYMTLVEAFRHMQIEEEDTLENGDL---------DHXXXXXXXXXXXXXXXXXXXXXXXPVVVDADSTDGAVLVNGNEAEEQW 632 DA+G+ KLA+LAKEQGKNNVAFLCLFMLG++EDCL LLVESNRIPEAALMARSYLPSKVSEIVA+WR DL K++PKAAESLADPEEY NLF++WQVAL++E++AA TRGVHPPA DY +HAD+ + TLV+AFR MQIEEE LE GD+ D VVVDADSTDGAVLVNGNE+EEQW Sbjct: 708 DADGMMKLAALAKEQGKNNVAFLCLFMLGQVEDCLHLLVESNRIPEAALMARSYLPSKVSEIVALWRNDLTKISPKAAESLADPEEYPNLFEEWQVALSLENRAAETRGVHPPAGDYCSHADRDHTTLVDAFRIMQIEEEGRLEQGDVLDEVGEEGEDGEEEEEEDRQEESSDGRQQNVEEEAVVVDADSTDGAVLVNGNESEEQW 913
BLAST of CX289750 vs. ExPASy Swiss-Prot
Match: COB23_ARATH (Coatomer subunit beta'-3 OS=Arabidopsis thaliana GN=At3g15980 PE=2 SV=1) HSP 1 Score: 261.536 bits (667), Expect = 2.605e-69 Identity = 136/195 (69.74%), Postives = 155/195 (79.49%), Query Frame = 3 Query: 42 DAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDYVNHADKSYMTLVEAFRHMQIEEEDTLENGDLDHXXXXXXXXXXXXXXXXXXXXXXXPV---VVDADSTDGAVLVNGNE 617 DAEG+SKLA LAKEQGKNNVAFLCLF LG+LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVA+WR+DL KVNPKAAESLADPEEYSNLF+DWQVAL+VE+ A TRGV+ AE+Y +HADK +TLVEAFR++Q+E E++LENG++DH VVDADSTDGAVLVNG+E Sbjct: 709 DAEGVSKLACLAKEQGKNNVAFLCLFTLGRLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVALWREDLSKVNPKAAESLADPEEYSNLFEDWQVALSVEANTAETRGVYTAAENYPSHADKPSITLVEAFRNLQVEAEESLENGNIDHEVAEENGHVENEGDEEEQQEEEVNEEEGVVDADSTDGAVLVNGSE 903
BLAST of CX289750 vs. ExPASy Swiss-Prot
Match: COB22_ORYSJ (Coatomer subunit beta'-2 OS=Oryza sativa subsp. japonica GN=Os02g0209100 PE=2 SV=1) HSP 1 Score: 254.218 bits (648), Expect = 4.159e-67 Identity = 132/204 (64.71%), Postives = 154/204 (75.49%), Query Frame = 3 Query: 42 DAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDYVNHADKSYMTLVEAFRHMQIEEEDTL--ENGDLDHXXXXXXXXXXXXXXXXXXXXXXXPVVVDAD-STDGAVLVNGNEAEEQWGTNN 644 DAEG++KL S+AKEQGKNNVAFLC FMLGKLE+CLQLL+ESNRIPEAALM+RSYLPSKV EIV +W+KDLQKVNPKAAESLADP+EY NLF+DWQ+AL VE+ A RG++PPAE+Y+ HA++ TLVEAF+ M I E+ L ENGD H V V+AD STDGAVLVNGN+ EEQWGTNN Sbjct: 709 DAEGLTKLTSMAKEQGKNNVAFLCFFMLGKLEECLQLLIESNRIPEAALMSRSYLPSKVPEIVTLWKKDLQKVNPKAAESLADPDEYPNLFEDWQIALNVEANVAPKRGIYPPAEEYIIHAERPNETLVEAFKSMHIHLEEVLPDENGDDTH-------EAIEENGVEESQEDAVEVDVEADGSTDGAVLVNGNDTEEQWGTNN 905
BLAST of CX289750 vs. ExPASy Swiss-Prot
Match: COB23_ORYSJ (Putative coatomer subunit beta'-3 OS=Oryza sativa subsp. japonica GN=Os02g0209000 PE=3 SV=2) HSP 1 Score: 250.366 bits (638), Expect = 6.005e-66 Identity = 129/204 (63.24%), Postives = 154/204 (75.49%), Query Frame = 3 Query: 42 DAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDYVNHADKSYMTLVEAFRHMQIEEEDTL--ENGDLDHXXXXXXXXXXXXXXXXXXXXXXXPVVVDAD-STDGAVLVNGNEAEEQWGTNN 644 DAEG++KL S+AKEQGKNNVAFLC FMLGKLE+CLQLL+ESNRIPEAALM+RSYLPSKV EIV +W+KDLQKVNPKAAESLADP EY NLF+DWQ+AL VE+ A RG++ PA++Y+ HA++ TLVEAF++M+I +E+ L ENGD H V V+AD STDG VLVNGN+ EEQWGTNN Sbjct: 709 DAEGLTKLTSMAKEQGKNNVAFLCFFMLGKLEECLQLLIESNRIPEAALMSRSYLPSKVPEIVTLWKKDLQKVNPKAAESLADPNEYPNLFEDWQIALNVEANVAPKRGIYAPAKEYIIHAERPNETLVEAFKNMRIHQEEVLPDENGDDTH-------EAIEENGVEESQEDAVEVDVEADGSTDGTVLVNGNDTEEQWGTNN 905
BLAST of CX289750 vs. ExPASy Swiss-Prot
Match: COB21_ORYSJ (Coatomer subunit beta'-1 OS=Oryza sativa subsp. japonica GN=Os06g0143900 PE=2 SV=1) HSP 1 Score: 244.202 bits (622), Expect = 4.303e-64 Identity = 132/202 (65.35%), Postives = 146/202 (72.28%), Query Frame = 3 Query: 42 DAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDYVNHADKSYMTLVEAFRHMQI----EEEDTL-ENGDLDHXXXXXXXXXXXXXXXXXXXXXXXPVVVDADSTDGAVLVNGNEAEEQW 632 DAEGI KLAS AKE GKNNVAFLCLFMLGKLEDC+QLL++SNRIPEAALMARSYLPSKVSEIVAIWR DL KVNPKAAESLADP EY NLF+DWQVAL VE A+ R +PPA++Y+NHA+KS MTLVEAF+ MQ+ E ED L ENG+ D V VDAD + VLVNG E EEQW Sbjct: 709 DAEGIEKLASQAKEHGKNNVAFLCLFMLGKLEDCIQLLIDSNRIPEAALMARSYLPSKVSEIVAIWRNDLSKVNPKAAESLADPSEYPNLFEDWQVALTVEKNVASRRVHYPPADEYLNHAEKSDMTLVEAFKRMQVIEDEETEDALDENGEPDE---------EVLEENKVEESTDEAVEVDADEPEETVLVNGKEGEEQW 901
BLAST of CX289750 vs. ExPASy Swiss-Prot
Match: COPB2_RAT (Coatomer subunit beta' OS=Rattus norvegicus GN=Copb2 PE=1 SV=3) HSP 1 Score: 122.479 bits (306), Expect = 1.888e-27 Identity = 61/117 (52.14%), Postives = 81/117 (69.23%), Query Frame = 3 Query: 42 DAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDY 392 +A ++KLA A+ GKNNVAF+ F+ GKL+ CL+LL+ + R+PEAA +AR+YLPS+VS +V +WR++L KVN KAAESLADP EY NLF + A VE T PA+ Y Sbjct: 708 NASMVNKLAEGAERDGKNNVAFMSYFLQGKLDACLELLIRTGRLPEAAFLARTYLPSQVSRVVKLWRENLSKVNQKAAESLADPTEYENLFPGLKEAFVVEEWVKETHADLWPAKQY 824
BLAST of CX289750 vs. ExPASy Swiss-Prot
Match: COPB2_MOUSE (Coatomer subunit beta' OS=Mus musculus GN=Copb2 PE=2 SV=2) HSP 1 Score: 122.479 bits (306), Expect = 1.888e-27 Identity = 61/117 (52.14%), Postives = 81/117 (69.23%), Query Frame = 3 Query: 42 DAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDY 392 +A ++KLA A+ GKNNVAF+ F+ GKL+ CL+LL+ + R+PEAA +AR+YLPS+VS +V +WR++L KVN KAAESLADP EY NLF + A VE T PA+ Y Sbjct: 708 NASMVNKLAEGAERDGKNNVAFMSYFLQGKLDACLELLIRTGRLPEAAFLARTYLPSQVSRVVKLWRENLSKVNQKAAESLADPTEYENLFPGLKEAFVVEEWVKETHADLWPAKQY 824
BLAST of CX289750 vs. ExPASy Swiss-Prot
Match: COPB2_BOVIN (Coatomer subunit beta' OS=Bos taurus GN=COPB2 PE=1 SV=3) HSP 1 Score: 122.479 bits (306), Expect = 1.888e-27 Identity = 61/117 (52.14%), Postives = 81/117 (69.23%), Query Frame = 3 Query: 42 DAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDY 392 +A ++KLA A+ GKNNVAF+ F+ GKL+ CL+LL+ + R+PEAA +AR+YLPS+VS +V +WR++L KVN KAAESLADP EY NLF + A VE T PA+ Y Sbjct: 708 NASMVNKLAEGAERDGKNNVAFMSYFLQGKLDACLELLIRTGRLPEAAFLARTYLPSQVSRVVKLWRENLSKVNQKAAESLADPTEYENLFPGLKEAFVVEEWVKETHADLWPAKQY 824
BLAST of CX289750 vs. ExPASy Swiss-Prot
Match: COPB2_PONAB (Coatomer subunit beta' OS=Pongo abelii GN=COPB2 PE=2 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 3.221e-27 Identity = 60/117 (51.28%), Postives = 81/117 (69.23%), Query Frame = 3 Query: 42 DAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDY 392 +A ++KLA A+ GKNNVAF+ F+ GK++ CL+LL+ + R+PEAA +AR+YLPS+VS +V +WR++L KVN KAAESLADP EY NLF + A VE T PA+ Y Sbjct: 708 NANMVNKLAEGAERDGKNNVAFMSYFLQGKVDACLELLIRTGRLPEAAFLARTYLPSQVSRVVKLWRENLSKVNQKAAESLADPTEYENLFPGLKEAFVVEEWVKETHAELWPAKQY 824 The following BLAST results are available for this feature:
BLAST of CX289750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CX289750 ID=CX289750; Name=CX289750; organism=Citrus clementina; type=EST; length=644bpback to top |