CX289804

Overview
NameCX289804
Unique NameCX289804
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length572
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289804 vs. ExPASy Swiss-Prot
Match: ATK4_ARATH (Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.138e-43
Identity = 96/175 (54.86%), Postives = 119/175 (68.00%), Query Frame = 1
Query:    7 TREVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQSDISELFKYKQMAEKLK 531
            T +V +L+  G   R+V ST  N+ SSRSH  + V V+G +L +G      + LVDLAGSERV K EV G+RLKE+Q INKSLSALGDVIS+L+ K+ H+PYRNSKLT +LQ SLGG  KTLMFV ISP    LGET+ +L FA RV  +E G AR   D SE+ + K+    LK
Sbjct:  572 TDDVIQLMDLGHMNRAVSSTAMNDRSSRSHSCVTVHVQGRDLTSGSILHGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVISSLSQKTSHVPYRNSKLTQLLQDSLGGSAKTLMFVHISPEPDTLGETISTLKFAERVGSVELGAARVNKDNSEVKELKEQIANLK 746          
BLAST of CX289804 vs. ExPASy Swiss-Prot
Match: ATK3_ARATH (Kinesin-3 OS=Arabidopsis thaliana GN=ATK3 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.147e-42
Identity = 93/164 (56.71%), Postives = 114/164 (69.51%), Query Frame = 1
Query:    7 TREVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQSDISEL 498
            +REV  LL   AR RSVG T  NE SSRSH +  + + G N    Q+ +  L L+DLAGSER+ K    G+RLKE+Q INKSLS+LGDVI ALA K  H+P+RNSKLT++LQ  LGGD KTLMFV I+P SS  GE+LCSL FA+RV   E G  R+Q++I  L
Sbjct:  584 SREVSFLLDHAARNRSVGKTQMNEQSSRSHFVFTLRISGVNESTEQQVQGVLNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLGDVIFALAKKEDHVPFRNSKLTYLLQPCLGGDAKTLMFVNIAPESSSTGESLCSLRFAARVNACEIGTPRRQTNIKPL 747          
BLAST of CX289804 vs. ExPASy Swiss-Prot
Match: KIFC3_HUMAN (Kinesin-like protein KIFC3 OS=Homo sapiens GN=KIFC3 PE=1 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 2.373e-41
Identity = 88/159 (55.35%), Postives = 114/159 (71.70%), Query Frame = 1
Query:   13 EVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQSDI 489
            ++ ++ + G   R+   TN NE SSRSH LL VTV+G +   G +T   L LVDLAGSERVGK   +G RL+E+Q INKSLSALGDVI+AL S+ GH+P+RNSKLT++LQ SL GD KTLM VQ+SP   +  ETL SL FA RVR +E GP  +++++
Sbjct:  621 DINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVELGPGLRRAEL 779          
BLAST of CX289804 vs. ExPASy Swiss-Prot
Match: KIFC3_MOUSE (Kinesin-like protein KIFC3 OS=Mus musculus GN=Kifc3 PE=1 SV=4)

HSP 1 Score: 167.933 bits (424), Expect = 3.100e-41
Identity = 87/159 (54.72%), Postives = 114/159 (71.70%), Query Frame = 1
Query:   13 EVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQSDI 489
            ++ ++ + G   R+   TN NE SSRSH LL VTV+G +   G +T   L LVDLAGSERVGK   +G RL+E+Q IN+SLSALGDVI+AL S+ GH+P+RNSKLT++LQ SL GD KTLM VQ+SP   +  ETL SL FA RVR +E GP  +++++
Sbjct:  619 DINKVFEFGYNNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGNRLREAQHINRSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLRFAERVRSVELGPGSRRTEL 777          
BLAST of CX289804 vs. ExPASy Swiss-Prot
Match: KIF2_DICDI (Kinesin-related protein 2 OS=Dictyostelium discoideum GN=kif2 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.476e-40
Identity = 89/159 (55.97%), Postives = 115/159 (72.33%), Query Frame = 1
Query:   13 EVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQSDI 489
            +V+ELL    + RSV  T  NE SSRSH + ++ + G N  + ++T+  L L+DLAGSERV +  V+G++LKE+Q INKSLS+LGDVISALA+K  HIPYRNSKLT +LQ+S+GG+ KTLMFV ISP   DL E+  SL FA++V   E G ARKQ  I
Sbjct:  634 QVYELLNLANKNRSVAKTLCNERSSRSHTVFQLKLIGYNQQSSERTQGLLNLIDLAGSERVSRSGVEGKQLKETQAINKSLSSLGDVISALANKEQHIPYRNSKLTFLLQNSIGGNSKTLMFVNISPELKDLQESTSSLRFAAKVNSCELGAARKQKII 792          
BLAST of CX289804 vs. ExPASy Swiss-Prot
Match: KLPA_EMENI (Kinesin-like protein klpA OS=Emericella nidulans GN=klpA PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 1.701e-39
Identity = 89/163 (54.60%), Postives = 114/163 (69.94%), Query Frame = 1
Query:   16 VWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISAL--ASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQSDISEL 498
            V  LLK  A  RSV +T ANE SSRSH +  + + GEN I G++++  L LVDLAGSER+      G+RLKE+Q IN+SLS LGDVI+AL    K GHIPYRNSKLT++LQ SLGG+ KTLMFV +SP  + L ETL SL FA++V     G A+KQ+ + ++
Sbjct:  601 VESLLKRAAANRSVAATKANERSSRSHSIFILKLIGENYITGERSEGTLNLVDLAGSERLSHSGATGDRLKETQNINRSLSCLGDVIAALGQGKKDGHIPYRNSKLTYLLQFSLGGNSKTLMFVMVSPLQAHLSETLTSLKFATKVHNTHIGTAKKQTRVRDV 763          
BLAST of CX289804 vs. ExPASy Swiss-Prot
Match: ATK1_ARATH (Kinesin-1 OS=Arabidopsis thaliana GN=ATK1 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.701e-39
Identity = 86/157 (54.78%), Postives = 108/157 (68.79%), Query Frame = 1
Query:   13 EVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQS 483
            ++  LL+  A+ RSVG T  NE SSRSH +  + + G N    Q+ +  L L+DLAGSER+ K    G+RLKE+Q INKSLSAL DVI ALA K  H+P+RNSKLT++LQ  LGGD KTLMFV ISP  +  GE+LCSL FA+RV   E G  R+Q+
Sbjct:  625 KISSLLQQAAQSRSVGKTQMNEQSSRSHFVFTMRISGVNESTEQQVQGVLNLIDLAGSERLSKSGATGDRLKETQAINKSLSALSDVIFALAKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPDPTSAGESLCSLRFAARVNACEIGIPRRQT 781          
BLAST of CX289804 vs. ExPASy Swiss-Prot
Match: ATK2_ARATH (Kinesin-2 OS=Arabidopsis thaliana GN=ATK2 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.949e-39
Identity = 87/157 (55.41%), Postives = 108/157 (68.79%), Query Frame = 1
Query:    7 TREVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARK 477
            +++V  LL   AR RSVG T  NE SSRSH +  + + G N    Q+ +  L L+DLAGSER+ K    G+RLKE+Q INKSLS+LGDVI ALA K  H+P+RNSKLT++LQ  LGGD KTLMFV I+P  S  GE+LCSL FA+RV   E G A +
Sbjct:  575 SKQVSFLLDHAARNRSVGKTAMNEQSSRSHFVFTLKISGFNESTEQQVQGVLNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLGDVIFALAKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNITPEPSSTGESLCSLRFAARVNACEIGTAHR 731          
BLAST of CX289804 vs. ExPASy Swiss-Prot
Match: KLP2_SCHPO (Kinesin-like protein 2 OS=Schizosaccharomyces pombe GN=klp2 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.219e-37
Identity = 89/157 (56.69%), Postives = 110/157 (70.06%), Query Frame = 1
Query:   13 EVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALAS-KSG-HIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARK 477
            +V  LL   ++ RSV +TNANE SSRSH +  + + G N   G+  +S L L+DLAGSER+   +  GERLKE+Q INKSLS LGDVI AL S K G +IPYRNSKLT++LQ SLGG+ KTLMFV ISP    + ETLCSL FA++V   + G ARK
Sbjct:  658 QVTWLLDQASKNRSVAATNANEHSSRSHSVFMLHLNGSNSTTGETCRSTLNLIDLAGSERLSSSQSVGERLKETQAINKSLSCLGDVIHALGSGKEGTYIPYRNSKLTNLLQYSLGGNSKTLMFVNISPLKQHVPETLCSLRFATKVNNTQIGTARK 814          
BLAST of CX289804 vs. ExPASy Swiss-Prot
Match: CTK2_XENLA (Carboxy-terminal kinesin 2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.542e-35
Identity = 82/154 (53.25%), Postives = 104/154 (67.53%), Query Frame = 1
Query:   13 EVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPAR 474
            EV ELLK     RSV  T  N+ SSRSH + ++ ++GEN     KT S + L+DLAGSER+ +    G+RLKE+Q IN SLS LG VI++L +K  HIPYRNSKLT++LQ+SLGG+ K LMFV ISP   +  E+L SL FAS+V     G AR
Sbjct:  486 EVHELLKIAKANRSVAKTAINDRSSRSHSVFQLKIEGENKQRDLKTSSMISLIDLAGSERLDRSLSTGDRLKETQCINTSLSTLGMVITSLCNKDSHIPYRNSKLTYLLQNSLGGNAKVLMFVNISPLEENFAESLNSLRFASKVNECVIGTAR 639          
The following BLAST results are available for this feature:
BLAST of CX289804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
ATK4_ARATH1.138e-4354.86Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=... [more]
ATK3_ARATH2.147e-4256.71Kinesin-3 OS=Arabidopsis thaliana GN=ATK3 PE=2 SV=... [more]
KIFC3_HUMAN2.373e-4155.35Kinesin-like protein KIFC3 OS=Homo sapiens GN=KIFC... [more]
KIFC3_MOUSE3.100e-4154.72Kinesin-like protein KIFC3 OS=Mus musculus GN=Kifc... [more]
KIF2_DICDI4.476e-4055.97Kinesin-related protein 2 OS=Dictyostelium discoid... [more]
KLPA_EMENI1.701e-3954.60Kinesin-like protein klpA OS=Emericella nidulans G... [more]
ATK1_ARATH1.701e-3954.78Kinesin-1 OS=Arabidopsis thaliana GN=ATK1 PE=2 SV=... [more]
ATK2_ARATH4.949e-3955.41Kinesin-2 OS=Arabidopsis thaliana GN=ATK2 PE=2 SV=... [more]
KLP2_SCHPO1.219e-3756.69Kinesin-like protein 2 OS=Schizosaccharomyces pomb... [more]
CTK2_XENLA2.542e-3553.25Carboxy-terminal kinesin 2 OS=Xenopus laevis PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC02017C11SK IF1 Citrus clementina cDNA clone C02017C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289804 ID=CX289804; Name=CX289804; organism=Citrus clementina; type=EST; length=572bp
TTCGGCACGAGGGAAGTGTGGGAGCTACTTAAGTCTGGAGCCAGAGTTAG
ATCTGTTGGATCCACCAATGCCAATGAGCTCAGTAGCCGGTCTCACTGCT
TGTTGCGAGTAACTGTGAAGGGGGAGAATCTGATAAATGGGCAGAAGACT
AAGAGTCACCTCTGGCTGGTAGACTTGGCAGGCAGTGAACGTGTGGGGAA
GATTGAAGTTGATGGTGAGAGGTTGAAGGAATCTCAGTTTATAAATAAAT
CTCTCTCTGCACTTGGTGATGTTATATCTGCTCTGGCATCTAAATCAGGC
CACATTCCGTACAGGAACTCGAAGCTCACTCATATTTTGCAGAGCTCTCT
AGGTGGAGATTGCAAGACTCTGATGTTTGTCCAGATCAGCCCAAGTTCTT
CAGACCTTGGAGAGACCCTTTGTTCACTGAATTTTGCCAGCCGAGTTCGG
GGAATTGAAAGTGGTCCTGCTCGGAAACAATCAGACATTTCTGAACTTTT
TAAGTACAAGCAAATGGCAGAAAAGTTAAAGCAGGATGAGAAGGAGACGA
AGAAGTTGCAGGACAATTTGCA
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