CX289808

Overview
NameCX289808
Unique NameCX289808
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289808 vs. ExPASy Swiss-Prot
Match: YABD_BACSU (Uncharacterized deoxyribonuclease yabD OS=Bacillus subtilis GN=yabD PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.705e-17
Identity = 66/235 (28.09%), Postives = 97/235 (41.28%), Query Frame = 3
Query:   18 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPWFVQERTPNWFSTLKEFFETTPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVTSVTVGCL*NILNSLAYLISSFY*VPSERILLETDAPDALP 722
            LFD H HL   +      ++I       V    V G          +M E +  +    G HP    + T    + +KE        A+GE+GLD        D   +V  FR Q+ LAKE+  P  IH   A  D++ I+K  G    G I+H + GSAE+  E  K+  Y SF G +    A+K K+++K                          +P++R+L+ETD P   P
Sbjct:    2 LFDTHAHLNAEQYDTDLEEVIERAKAEKVERIVVVGFDRPTITRAMEMIEEYDFIYAAIGWHPVDAIDMTEEDLAWIKELSAHEKVVAIGEMGLDYHWDKSPKDIQKEV--FRNQIALAKEVNLPIIIHNRDATEDVVTILKEEGAEAVGGIMHCFTGSAEVARECMKMNFYLSFGGPVTFKNAKKPKEVVKE-------------------------IPNDRLLIETDCPFLTP 209          
BLAST of CX289808 vs. ExPASy Swiss-Prot
Match: TAT3A_XENLA (Putative deoxyribonuclease tatdn3-A OS=Xenopus laevis GN=tatdn3-A PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 68/254 (26.77%), Postives = 112/254 (44.09%), Query Frame = 3
Query:   24 DAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVK--DMSERHPS-VIPCFGVHPWFVQERTPNWFSTLKEFFETTPA---------AAVGEIGLD------KGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVTSVTVGCL*NILNSLAYLISSFY*VPSERILLETDAPDALPKAE 731
            D HCH+          ++I  +  +G+   A+  V+E      K   +S+R+P  ++PCFG+HP  +Q       S   +  E   A          A+GEIGLD        S+ RE    +Q+ VF+ QLE+AK +  P ++H   A    +  +K  G   + V++H++ G      E  + G +FSF   +  ++ ++ KK++K+                         +P E I LETD+P   PK E
Sbjct:    7 DCHCHMTAEEFSQDTEEVIEESKENGIQ--ALISVTEHGGEFEKLIYLSDRYPDYIMPCFGIHP--IQSNGDGQRSVTIKDLEPVLAQFDKYKDSLVAIGEIGLDFTPWLAPTSEQRE----EQMKVFQMQLEMAKRMDLPVNVHSRSAGRQTVSFLKEQG--AEKVLLHNFAGRPSAAQEGVQAGYFFSFPPAV--IRNEQRKKLIKM-------------------------IPLENICLETDSPSLGPKKE 223          
BLAST of CX289808 vs. ExPASy Swiss-Prot
Match: Y343_BUCAP (Uncharacterized deoxyribonuclease BUsg_343 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=BUsg_343 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.301e-12
Identity = 61/245 (24.90%), Postives = 100/245 (40.82%), Query Frame = 3
Query:   12 MKLFDAHCHLQDPRIFHKAPQLIATTVN--------SGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPWFVQERTPNWFSTLKEFFETTPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVTSVTVGCL*NILNSLAYLISSFY*VPSERILLETDAPDALP 722
            M L D+HCH+    I  K   L+   +         + V  F     S +++   K +   + S+    G+HP + Q+      + LK+        A+GE GLD        +  ++   FR+ + +A  L +P  IH   A  D ++I+K       G I+HS+  S +   EL  +G Y SFSG +   K+ +    LK                          +P E++L+ETD+P   P
Sbjct:    1 MFLIDSHCHIDQMNIDQKNDDLLHQEIEKILNKAYENHVKKFLTVSTSIQNFYKTKKLLSTYDSIFYSCGIHPLYCQKEI-ECLNELKKLSYDKCVIALGETGLDYYYSFETKNLQEKF--FREHIRIAITLNKPIIIHSRNAIKDTIKILKEENAEKCGGILHSFTESEKSAFELLDMGFYISFSGIITFKKSIELCNTLKK-------------------------IPLEKLLIETDSPYLAP 217          
BLAST of CX289808 vs. ExPASy Swiss-Prot
Match: TATD3_BOVIN (Putative deoxyribonuclease TATDN3 OS=Bos taurus GN=TATDN3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.898e-12
Identity = 57/208 (27.40%), Postives = 93/208 (44.71%), Query Frame = 3
Query:   18 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS-VIPCFGVHPWFVQERTP--NWFSTLKEFFETTP--------AAAVGEIGLDKGSK--GREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVT 602
            L D HCHL  P   H    ++     + V+   V      ++  +  +S+R+   V+PC GVHP  VQ  +P      TLK+     P          A+GE+GLD   +  G +    +Q  V  +Q++LAK L  P ++H   A    + ++   G   D V++H++ G   +  E  K G +FS    ++    QK  K L + +
Sbjct:    8 LVDCHCHLSAPDFDHDLDDVLKKAKEANVMALVVVAEHSGEFEKIMQLSQRYNGFVLPCLGVHP--VQGVSPEDQRSVTLKDLDVALPIIENYKDQLLAIGEVGLDFSPRFAGTDEQKEEQRQVLIRQVQLAKRLNLPLNVHSRSAGRPTISLLNEQG--ADKVLLHAFDGRPSVAMEGVKAGYFFSIPPSIIRSGQQKLVKQLPLTS 211          
BLAST of CX289808 vs. ExPASy Swiss-Prot
Match: Y1786_SYNY3 (Uncharacterized deoxyribonuclease sll1786 OS=Synechocystis sp. (strain PCC 6803) GN=sll1786 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.785e-12
Identity = 60/241 (24.90%), Postives = 103/241 (42.74%), Query Frame = 3
Query:   12 MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPWFVQERTPNWFSTLKEFFETTP-AAAVGEIGLDKGSKGREIDFMD-QVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMK--SVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVTSVTVGCL*NILNSLAYLISSFY*VPSERILLETDAPDALP 722
            M L D H H+          QL      +GV+    + V  ++++ ++ +++R P +    G+HP   ++   N    +  + +      A+GE+GLD      + D  D Q+ VFR QL +A+EL +P  IHC  A   + +++        P   ++H + G+ E       LG Y SFSG +   KA+  +   ++                         VP +R+L+ETD P   P
Sbjct:    1 MHLVDTHVHINFDVFAADLDQLQHRWRQAGVVQLVHSCVKPQEFDQIQSLADRFPELFFAVGLHPLDAEDWQDNTAGQILAYAKADDRVVAIGEMGLDFF----KADNRDHQIEVFRAQLAIARELNKPVIIHCRDAAQTMRQVLTDFQAESGPVAGVMHCWGGTPEETQWFLDLGFYISFSGTVTFKKAEGIQASAQM-------------------------VPPDRLLVETDCPFLAP 212          
BLAST of CX289808 vs. ExPASy Swiss-Prot
Match: Y081_HAEIN (Uncharacterized deoxyribonuclease HI0081 OS=Haemophilus influenzae GN=HI0081 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.785e-12
Identity = 61/242 (25.21%), Postives = 99/242 (40.91%), Query Frame = 3
Query:   12 MKLFDAHCHLQDPRIFHKAP--QLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGV--HPWFVQERTPNWFSTLKEFFET--TPAAAVGEIGLDKGSKGREID--FMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVTSVTVGCL*NILNSLAYLISSFY*VPSERILLETDAPD 713
            M  FD H HL   + F   P  QLI     + V    V  V E D+  +++M+   P  + C+G+  HP ++QE   N    L++  +   T   AV EIGL++       D  +  Q   F  QL LAK+   P +IH  +    +   +K + P     ++H + GS +       LG      G +   +A K ++ +                           +P + ++LETD+PD
Sbjct:    1 MHFFDTHTHLNYLQQFTGEPLSQLIDNAKQADVQKILVVAVKEADFKTIQNMTALFPDNL-CYGLGLHPLYIQEHAENDLILLEQALKNRDTNCTAVAEIGLERAIPDLLTDELWAKQCHFFESQLYLAKQFNLPVNIHSRKTHDQIFTFLKRI-PLSKLGVVHGFSGSYDQAKRFVDLGYKIGVGGTITYERANKTRQAIAK-------------------------LPLDALVLETDSPD 215          
BLAST of CX289808 vs. ExPASy Swiss-Prot
Match: TATD2_HUMAN (Putative deoxyribonuclease TATDN2 OS=Homo sapiens GN=TATDN2 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12
Identity = 60/186 (32.26%), Postives = 82/186 (44.09%), Query Frame = 3
Query:  192 FGVHPWFVQERTPNWFSTLKEFFETTPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFS--FSGFLMSMKAQKAKKMLKVVTSVTVGCL*NILNSLAYLISSFY*VPSERILLETDAPDALPKAELNSL 743
            FG HP F +  + +    L +      A A GE+GLD   K       +Q  VF +QL+LA  LK+P  IHC  A  DLLEIMK   P    +  H + GS  ++  L K     S  F+  L    A +A++ L+                          +P ERI++ETDAP  LP+    SL
Sbjct:  561 FGCHPHFARYYSESQERNLLQALRHPKAVAFGEMGLDYSYKCTT-PVPEQHKVFERQLQLAVSLKKPLVIHCREADEDLLEIMKKFVPPDYKIHRHCFTGSYPVIEPLLKYFPNMSVGFTAVLTYSSAWEAREALRQ-------------------------IPLERIIVETDAPYFLPRQVPKSL 720          
BLAST of CX289808 vs. ExPASy Swiss-Prot
Match: YJJV_ECOLI (Uncharacterized deoxyribonuclease yjjV OS=Escherichia coli (strain K12) GN=yjjV PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 57/235 (24.26%), Postives = 91/235 (38.72%), Query Frame = 3
Query:   15 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPWFVQERTPNWFSTLKEFFETTPA--AAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKAKKMLKVVTSVTVGCL*NILNSLAYLISSFY*VPSERILLETDAPD 713
            +  D HCH   P         +     +GV    V     E++  V  ++E +  +    G+HP  +++ +      L++  E  PA   AVGEIGLD    G +  F  Q  +  +QL+LAK    P  +H  R    L   +K     P   ++H + GS +      +LG      G +   +A K + ++                           +P   +LLETDAPD
Sbjct:    4 RFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQPLYAALGLHPGMLEKHSDVSLEQLQQALERRPAKVVAVGEIGLD--LFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKR-HDLPRTGVVHGFSGSLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAK-------------------------LPLASLLLETDAPD 210          
The following BLAST results are available for this feature:
BLAST of CX289808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
YABD_BACSU8.705e-1728.09Uncharacterized deoxyribonuclease yabD OS=Bacillus... [more]
TAT3A_XENLA2.621e-1326.77Putative deoxyribonuclease tatdn3-A OS=Xenopus lae... [more]
Y343_BUCAP1.301e-1224.90Uncharacterized deoxyribonuclease BUsg_343 OS=Buch... [more]
TATD3_BOVIN2.898e-1227.40Putative deoxyribonuclease TATDN3 OS=Bos taurus GN... [more]
Y1786_SYNY33.785e-1224.90Uncharacterized deoxyribonuclease sll1786 OS=Synec... [more]
Y081_HAEIN3.785e-1225.21Uncharacterized deoxyribonuclease HI0081 OS=Haemop... [more]
TATD2_HUMAN4.943e-1232.26Putative deoxyribonuclease TATDN2 OS=Homo sapiens ... [more]
YJJV_ECOLI4.185e-1124.26Uncharacterized deoxyribonuclease yjjV OS=Escheric... [more]
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Properties
Property NameValue
Genbank descriptionC02017D03SK IF1 Citrus clementina cDNA clone C02017D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289808 ID=CX289808; Name=CX289808; organism=Citrus clementina; type=EST; length=744bp
AGGCAGAGCAAATGAAGCTATTTGATGCACACTGTCACCTTCAAGACCCA
AGAATCTTTCACAAAGCACCTCAATTGATTGCCACCACGGTGAATTCTGG
AGTACTTCATTTTGCTGTAAATGGCGTCTCCGAGGAAGATTGGAACTTGG
TTAAAGATATGAGTGAACGCCATCCTTCTGTAATCCCCTGCTTCGGAGTT
CATCCATGGTTTGTTCAAGAGAGGACTCCCAACTGGTTTAGTACTCTTAA
GGAATTCTTTGAGACCACTCCTGCTGCTGCTGTTGGAGAGATTGGTTTAG
ACAAAGGTTCAAAGGGAAGGGAGATTGACTTTATGGATCAGGTTGGAGTA
TTCAGGCAACAGCTTGAACTGGCAAAAGAGTTGAAAAGACCAGCATCCAT
ACACTGTGTTCGTGCATTTGGTGATCTGCTTGAGATAATGAAATCTGTGG
GGCCTTTCCCTGATGGTGTCATTATTCATTCTTACCTGGGTTCTGCCGAG
ATGGTTCCTGAATTATCAAAGCTTGGCGCATACTTTTCATTCTCTGGATT
TCTCATGTCCATGAAAGCACAAAAGGCAAAGAAAATGTTGAAAGTGGTAA
CATCAGTCACTGTCGGTTGTCTCTAAAATATTTTGAACTCTTTGGCATAC
TTAATTTCAAGCTTCTATTAGGTGCCTTCAGAAAGGATTCTATTGGAGAC
AGATGCACCTGATGCATTGCCAAAGGCAGAGTTAAATTCTCTCT
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