CX289816

Overview
NameCX289816
Unique NameCX289816
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289816 vs. ExPASy Swiss-Prot
Match: PKHA8_DANRE (Pleckstrin homology domain-containing family A member 8 OS=Danio rerio GN=plekha8 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.412e-20
Identity = 52/149 (34.90%), Postives = 84/149 (56.38%), Query Frame = 3
Query:  237 VKSEQGEMLTKPFLEVCKLILPVLDKFGAAM-SLVKSDIGGNITRLENKYLSNPEKYKNLYSMVGEEVEAKTAKRSSSCTNGLLWLTRAMDFLVELFRNLLAHPDWTMPQVCTDSYGKTLKKFHGWIASSSFTVAMKLAPDRKKFMEVI 680
            +  E   + T+ FL+ C  I+PVLDK G  + + VK D  GNI +++ K +S+PE +  L S+V  EV+ + A+  +S T  LLWL R + FL E    +       +     ++YGKTL+++HGW+    F +A++ AP  + FM  +
Sbjct:  353 ILEEDSGIPTQAFLDSCYAIVPVLDKLGPTVFAPVKIDFVGNIKKIQQKVVSDPESFPTLQSIVLHEVKTEVAQVRNSATEALLWLKRGLKFLKEFLSEINTGVK-DVQGALYNAYGKTLRQYHGWVVRGVFALALRAAPSYEGFMAAL 500          
BLAST of CX289816 vs. ExPASy Swiss-Prot
Match: PKHA8_MOUSE (Pleckstrin homology domain-containing family A member 8 OS=Mus musculus GN=Plekha8 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.874e-19
Identity = 51/146 (34.93%), Postives = 84/146 (57.53%), Query Frame = 3
Query:  246 EQGEMLTKPFLEVCKLILPVLDKFGAAM-SLVKSDIGGNITRLENKYLSNPEKYKNLYSMVGEEVEAKTAKRSSSCTNGLLWLTRAMDFLVELFRNLLAHPDWTMPQVCTDSYGKTLKKFHGWIASSSFTVAMKLAPDRKKFMEVI 680
            E   + T+ FL  C  ++PVLDK G  + + VK D+ GNI ++  KY++N E++  L  +V  EVEA  A+  +S T  LLWL R + FL + F   + + +  +     ++YGKTL++ HGW+    F +A++ AP  + F+  +
Sbjct:  326 EDSGIPTEAFLASCYAVVPVLDKLGPTVFAPVKMDLVGNIKKVNQKYITNKEEFTTLQKIVLHEVEADVAQVRNSATEALLWLKRGLKFL-KGFLTEVKNGEKDIQTALNNAYGKTLRQHHGWVVRGVFALALRAAPSYEDFVAAL 470          
BLAST of CX289816 vs. ExPASy Swiss-Prot
Match: PKHA8_HUMAN (Pleckstrin homology domain-containing family A member 8 OS=Homo sapiens GN=PLEKHA8 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.453e-19
Identity = 50/146 (34.25%), Postives = 83/146 (56.85%), Query Frame = 3
Query:  246 EQGEMLTKPFLEVCKLILPVLDKFGAAM-SLVKSDIGGNITRLENKYLSNPEKYKNLYSMVGEEVEAKTAKRSSSCTNGLLWLTRAMDFLVELFRNLLAHPDWTMPQVCTDSYGKTLKKFHGWIASSSFTVAMKLAPDRKKFMEVI 680
            E   + T+ FL  C  ++PVLDK G  + + VK D+ GNI ++  KY++N E++  L  +V  EVEA  A+  +S T  LLWL R + FL + F   + + +  +     ++YGKTL++ HGW+    F +A++  P  + F+  +
Sbjct:  326 EDSGIPTEAFLASCYAVVPVLDKLGPTVFAPVKMDLVGNIKKVNQKYITNKEEFTTLQKIVLHEVEADVAQVRNSATEALLWLKRGLKFL-KGFLTEVKNGEKDIQTALNNAYGKTLRQHHGWVVRGVFALALRATPSYEDFVAAL 470          
BLAST of CX289816 vs. ExPASy Swiss-Prot
Match: PKHA9_HUMAN (Protein PLEKHA9 OS=Homo sapiens GN=PLEKHA9 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.028e-18
Identity = 49/146 (33.56%), Postives = 82/146 (56.16%), Query Frame = 3
Query:  246 EQGEMLTKPFLEVCKLILPVLDKFGAAM-SLVKSDIGGNITRLENKYLSNPEKYKNLYSMVGEEVEAKTAKRSSSCTNGLLWLTRAMDFLVELFRNLLAHPDWTMPQVCTDSYGKTLKKFHGWIASSSFTVAMKLAPDRKKFMEVI 680
            E   + T+ FL  C  ++PVLDK G  + + VK D+  NI ++  KY++N E++  L  +V  EVEA  A+  +S T  LLWL R + FL + F   + + +  +     ++YGKTL++ HGW+    F +A++  P  + F+  +
Sbjct:  210 EDSGIPTEAFLASCCAVVPVLDKLGPTVFAPVKMDLVENIKKVNQKYITNKEEFTTLQKIVLHEVEADVAQVRNSATEALLWLKRGLKFL-KGFLTEVKNGEKDIQTALNNAYGKTLRQHHGWVVRGVFALALRATPSYEDFVAAL 354          
BLAST of CX289816 vs. ExPASy Swiss-Prot
Match: GLTP_DANRE (Glycolipid transfer protein OS=Danio rerio GN=gltp PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.625e-16
Identity = 52/155 (33.55%), Postives = 80/155 (51.61%), Query Frame = 3
Query:  264 TKPFLEVCKLILPVLDKFGAAM-SLVKSDIGGNITRLENKYLSNPEKYKNLYSMVGEEVEAKTAKRSS-SCTNGLLWLTRAMDFLVELFRNLL-AHPDWTMPQVC----TDSYGKTLKKFHGWIASSSFTVAMKLAPDRKKFMEVIGGSGDVNSD 707
            T+PFLE    + P  D  G+A+ S +K+DI GNIT+++  Y SNP ++K L  ++  E E   A+      T  L+WL R + F+  L ++L+    D   P +     T +Y   LKK+HGWI    F  A+  AP R  F+  +    +V  +
Sbjct:   20 TRPFLEAVSHLPPFFDCLGSAVFSPIKADIAGNITKIKAVYDSNPTRFKTLQQILEAEKEMHGAEWPKVGATLALMWLKRGLRFIQVLLQSLVDGDKDDNNPNLIKVNVTKAYEMALKKYHGWIVQKLFQAALYAAPYRSDFLRALSKGREVKDE 174          
BLAST of CX289816 vs. ExPASy Swiss-Prot
Match: GLTP_PIG (Glycolipid transfer protein OS=Sus scrofa GN=GLTP PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.626e-13
Identity = 46/155 (29.68%), Postives = 78/155 (50.32%), Query Frame = 3
Query:  264 TKPFLEVCKLILPVLDKFGAAM-SLVKSDIGGNITRLENKYLSNPEKYKNLYSMVGEEVEAKTAKRSS-SCTNGLLWLTRAMDFLVELFRNLL-AHPDWTMPQV----CTDSYGKTLKKFHGWIASSSFTVAMKLAPDRKKFMEVIGGSGDVNSD 707
            T PFLE    + P  D  G+ + + +K+DI GNIT+++  Y +NP K++ L +++  E E   A+      T  L+WL R + F+    +++     D   P +     T +Y   LKK+HGWI    F  A+  AP +  F++ +    +V  +
Sbjct:   20 TGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEVEKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVTEE 174          
BLAST of CX289816 vs. ExPASy Swiss-Prot
Match: GLTP_PANTR (Glycolipid transfer protein OS=Pan troglodytes GN=GLTP PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.626e-13
Identity = 46/155 (29.68%), Postives = 78/155 (50.32%), Query Frame = 3
Query:  264 TKPFLEVCKLILPVLDKFGAAM-SLVKSDIGGNITRLENKYLSNPEKYKNLYSMVGEEVEAKTAKRSS-SCTNGLLWLTRAMDFLVELFRNLL-AHPDWTMPQV----CTDSYGKTLKKFHGWIASSSFTVAMKLAPDRKKFMEVIGGSGDVNSD 707
            T PFLE    + P  D  G+ + + +K+DI GNIT+++  Y +NP K++ L +++  E E   A+      T  L+WL R + F+    +++     D   P +     T +Y   LKK+HGWI    F  A+  AP +  F++ +    +V  +
Sbjct:   20 TGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVTEE 174          
BLAST of CX289816 vs. ExPASy Swiss-Prot
Match: GLTP_HUMAN (Glycolipid transfer protein OS=Homo sapiens GN=GLTP PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 7.626e-13
Identity = 46/155 (29.68%), Postives = 78/155 (50.32%), Query Frame = 3
Query:  264 TKPFLEVCKLILPVLDKFGAAM-SLVKSDIGGNITRLENKYLSNPEKYKNLYSMVGEEVEAKTAKRSS-SCTNGLLWLTRAMDFLVELFRNLL-AHPDWTMPQV----CTDSYGKTLKKFHGWIASSSFTVAMKLAPDRKKFMEVIGGSGDVNSD 707
            T PFLE    + P  D  G+ + + +K+DI GNIT+++  Y +NP K++ L +++  E E   A+      T  L+WL R + F+    +++     D   P +     T +Y   LKK+HGWI    F  A+  AP +  F++ +    +V  +
Sbjct:   20 TGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVTEE 174          
BLAST of CX289816 vs. ExPASy Swiss-Prot
Match: GLTP_BOVIN (Glycolipid transfer protein OS=Bos taurus GN=GLTP PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.626e-13
Identity = 46/155 (29.68%), Postives = 78/155 (50.32%), Query Frame = 3
Query:  264 TKPFLEVCKLILPVLDKFGAAM-SLVKSDIGGNITRLENKYLSNPEKYKNLYSMVGEEVEAKTAKRSS-SCTNGLLWLTRAMDFLVELFRNLL-AHPDWTMPQV----CTDSYGKTLKKFHGWIASSSFTVAMKLAPDRKKFMEVIGGSGDVNSD 707
            T PFLE    + P  D  G+ + + +K+DI GNIT+++  Y +NP K++ L +++  E E   A+      T  L+WL R + F+    +++     D   P +     T +Y   LKK+HGWI    F  A+  AP +  F++ +    +V  +
Sbjct:   20 TGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEVEKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVTEE 174          
BLAST of CX289816 vs. ExPASy Swiss-Prot
Match: GLTP_RAT (Glycolipid transfer protein OS=Rattus norvegicus GN=GLTP PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 44/155 (28.39%), Postives = 76/155 (49.03%), Query Frame = 3
Query:  264 TKPFLEVCKLILPVLDKFGAAM-SLVKSDIGGNITRLENKYLSNPEKYKNLYSMVGEEVEAKTAKRSS-SCTNGLLWLTRAMDFLVELFRNLL-AHPDWTMPQV----CTDSYGKTLKKFHGWIASSSFTVAMKLAPDRKKFMEVIGGSGDVNSD 707
            T PFLE    + P  D  G+ + + +K+DI GNIT+++  Y ++P K+K L +++  E     A+      T  LLWL R + F+    +++     D   P +       +Y   LKK+HGW+    F  A+  AP +  F++ +    +V  +
Sbjct:   20 TGPFLEAVAHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTDPAKFKTLQNILEVEKGMYGAEWPKVGATLALLWLKRGLRFIQVFLQSICDGERDENHPNLIRVNANKAYEMALKKYHGWLVQKIFKAALYAAPYKSDFLKALSKGQNVTEE 174          
The following BLAST results are available for this feature:
BLAST of CX289816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PKHA8_DANRE8.412e-2034.90Pleckstrin homology domain-containing family A mem... [more]
PKHA8_MOUSE1.874e-1934.93Pleckstrin homology domain-containing family A mem... [more]
PKHA8_HUMAN5.453e-1934.25Pleckstrin homology domain-containing family A mem... [more]
PKHA9_HUMAN6.028e-1833.56Protein PLEKHA9 OS=Homo sapiens GN=PLEKHA9 PE=2 SV... [more]
GLTP_DANRE9.625e-1633.55Glycolipid transfer protein OS=Danio rerio GN=gltp... [more]
GLTP_PIG7.626e-1329.68Glycolipid transfer protein OS=Sus scrofa GN=GLTP ... [more]
GLTP_PANTR7.626e-1329.68Glycolipid transfer protein OS=Pan troglodytes GN=... [more]
GLTP_HUMAN7.626e-1329.68Glycolipid transfer protein OS=Homo sapiens GN=GLT... [more]
GLTP_BOVIN7.626e-1329.68Glycolipid transfer protein OS=Bos taurus GN=GLTP ... [more]
GLTP_RAT4.185e-1128.39Glycolipid transfer protein OS=Rattus norvegicus G... [more]

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Properties
Property NameValue
Genbank descriptionC02017D11SK IF1 Citrus clementina cDNA clone C02017D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289816 ID=CX289816; Name=CX289816; organism=Citrus clementina; type=EST; length=743bp
GAATTCGGCACGAGGGAAGCAAAATTAAAAAGTAAAATCAATCAAAACAA
AAACAGAATCTGATTCTCAGAGATATTTTCGCCGTTCAATCGAGTACCGA
ATCGAATCAATCCAAAACATTAACACTCATTTCCAAATTCTTCTTCGATC
GATCTGCATTTCGTCTCACATCATTTCAGTGAAGTAGGGAAATGGAGGGA
ACAGCGTTTAGTCCATCACTGGAAGGAATGAAGCACGTGAAGTCTGAGCA
AGGCGAGATGCTTACCAAGCCTTTCTTGGAAGTTTGCAAACTGATTTTGC
CTGTTTTGGATAAGTTTGGAGCGGCTATGTCTCTTGTAAAGTCAGATATT
GGTGGTAATATTACGAGGTTGGAGAATAAATATTTATCCAATCCCGAAAA
GTACAAGAACTTGTACAGCATGGTAGGAGAAGAAGTTGAAGCTAAAACAG
CAAAAAGATCATCTAGTTGTACCAATGGTCTTCTTTGGTTGACAAGAGCA
ATGGATTTCCTGGTGGAATTGTTTCGCAACTTACTTGCACATCCAGATTG
GACAATGCCACAAGTTTGTACAGATTCCTACGGCAAGACCCTGAAAAAAT
TTCATGGCTGGATTGCAAGTTCAAGTTTCACGGTCGCTATGAAGCTTGCA
CCAGATAGGAAGAAGTTTATGGAAGTTATTGGTGGCTCTGGAGATGTTAA
TTCTGACATGGATAAATTTTGTACTGCATTTGCTCCTCTGCTT
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