CX289817

Overview
NameCX289817
Unique NameCX289817
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length753
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX289817 vs. ExPASy Swiss-Prot
Match: Y4844_ARATH (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.730e-40
Identity = 83/128 (64.84%), Postives = 101/128 (78.91%), Query Frame = 2 
Query:   17 FYQVDQLRPGTSGHTLTVKVVSTKMVL---QKGRGDGTQVRQM---RIAECLVGDETGMIIFTARNDQVDLMKEGTTVILRNAKIDMFKGSMRLAVDKWGRVEVAEPANFTVKEDNNLSLIEYELVNV 382
            F +V+QL+PGT+GHTLTVKV+   +V+   +K R   +  R     RI ECL+GDETG I+FTARNDQVDLMK G TVILRN++IDMFKG+MRL VDKWGR+E    A+FTVKEDNNLSL+EYEL+NV
Sbjct:   22 FVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDNNLSLVEYELINV 149
The following BLAST results are available for this feature:
BLAST of CX289817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4844_ARATH5.730e-4064.84Uncharacterized protein At4g28440 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC02017D12SK IF1 Citrus clementina cDNA clone C02017D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289817 ID=CX289817; Name=CX289817; organism=Citrus clementina; type=EST; length=753bp
AATTCGGCACGAGGGTTTTTACCAGGTTGATCAGCTACGCCCGGGTACTA
GTGGGCACACTCTCACAGTGAAGGTCGTGAGTACGAAGATGGTATTGCAG
AAGGGTCGTGGTGATGGAACACAAGTACGTCAGATGCGAATTGCTGAATG
CTTGGTTGGTGATGAGACAGGAATGATTATCTTTACTGCTAGAAATGATC
AAGTGGACCTGATGAAAGAGGGTACTACTGTGATTCTGCGCAATGCAAAA
ATTGACATGTTTAAAGGATCAATGAGACTTGCTGTGGACAAGTGGGGCCG
TGTTGAAGTTGCAGAGCCTGCCAATTTCACCGTGAAGGAAGATAACAACC
TCTCTCTGATTGAATATGAGCTTGTGAATGTTGTAGAAGAGTGAATTTCT
GGACGGTGTTCACTTACTCACTGCAATGTGACCCAAGAATAAAAAGAAAT
CCAGCATATCATAGTACTGTCGTTTATGCGGCATCTCCTGTCCAAAACTG
TGGTGCCTTTAGGAAGAAGAAATCTGGAAGCTATTACTACCCAAGATGCT
TTCTACCGTTGTGGCAGATCCAGTAGAACCTTTTGATTGGACCTCCAAAC
AGATGGTGATGGCTCTAAAGTTGATAAGTGAAAGCAGCTGGCATTTAGAA
CTGTCTTTGGTTTGTTTGCGACCTATTTATTTTTGGAACTCAACTGTTCT
TTGGCTATTAGATTATACTTGAAATATTAATATCGTGAAAAAAAAAAAAA
AAA
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