CX289823

Overview
NameCX289823
Unique NameCX289823
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX289823 vs. ExPASy Swiss-Prot
Match: TKI1_ARATH (TSL-kinase interacting protein 1 OS=Arabidopsis thaliana GN=TKI1 PE=1 SV=2)

HSP 1 Score: 227.639 bits (579), Expect = 5.268e-59
Identity = 124/236 (52.54%), Postives = 160/236 (67.80%), Query Frame = 1 
Query:   40 RQRRKPDSISSAAYKKWEKAAIAGVSLVADAAEHLERTSTDKEVERQQE--HTALETADKVLPPLPTISPTLFAEGNVQTPVKLKLQLYPIDDGTRKALEMDNHNPHLELTLSTRKKISSVLEHLNRKWGNASVASGELMLFPYGAQRENLVGYQRWTQDSVFSAADVYAMIGSPPMFRLRYGWFSDTELGYVAPHAPSASGCVPSFHNINVENKKE---QIVDSVPGRVPSTSDQ 732
            RQRRK        Y+KWEKAAI GVSLVADAAEHLERTS DK+++ Q +   T   T    L  L +      ++ N+Q   KLKLQL+PID+ TR++LEMD HNPHLELTLS RKKISSVLEHLNRKWG++S A+GEL+LFPY A++E +  +QRWT DS  SAA+V++M+GSP +FRLRYGWF     G +    P++  C     ++NV+   E    + +S P  V ST++Q
Sbjct:  244 RQRRKQ------GYRKWEKAAIDGVSLVADAAEHLERTSIDKDMDDQTDLGPTRYLTGKSPLS-LCSAGDVPLSDANMQFSAKLKLQLFPIDECTRRSLEMDKHNPHLELTLSNRKKISSVLEHLNRKWGSSSCATGELLLFPYNARKETVTCHQRWTHDSFLSAAEVHSMVGSPSVFRLRYGWFVHDASGSIISQVPTSDPCPSLEDDMNVDRLNEVNMLLTESGPLSVHSTAEQ 472
The following BLAST results are available for this feature:
BLAST of CX289823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TKI1_ARATH5.268e-5952.54TSL-kinase interacting protein 1 OS=Arabidopsis th... [more]
back to top
Properties
Property NameValue
Genbank descriptionC02017E06SK IF1 Citrus clementina cDNA clone C02017E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289823 ID=CX289823; Name=CX289823; organism=Citrus clementina; type=EST; length=734bp
GAATTCGGCACGAGGGCAGACTCTGCTACTCTGAAACCTAGGCAACGACG
GAAACCAGATAGCATCTCATCAGCTGCATATAAAAAATGGGAAAAGGCTG
CTATTGCTGGGGTTTCTTTGGTTGCTGATGCTGCTGAGCATTTAGAACGA
ACATCCACTGATAAAGAAGTTGAACGTCAGCAAGAGCACACAGCTCTTGA
AACTGCTGATAAAGTTCTTCCCCCTTTGCCCACTATTTCACCAACTCTTT
TTGCTGAGGGCAATGTACAAACTCCTGTGAAACTTAAGCTCCAGCTGTAT
CCAATTGATGATGGTACTCGAAAAGCCCTAGAAATGGATAACCATAATCC
ACACCTGGAGCTCACTCTTAGTACAAGGAAAAAGATATCATCAGTACTTG
AACATTTAAATCGCAAATGGGGCAATGCAAGTGTCGCATCTGGAGAGCTA
ATGCTTTTTCCTTATGGTGCTCAAAGGGAAAATCTGGTGGGTTATCAGAG
ATGGACCCAGGACTCCGTTTTTAGTGCAGCAGATGTATATGCAATGATCG
GAAGCCCTCCAATGTTCCGCTTGAGGTATGGTTGGTTTTCTGATACTGAA
CTTGGGTATGTAGCACCACATGCTCCTTCAGCATCCGGCTGTGTTCCTAG
CTTCCATAATATAAATGTGGAAAATAAGAAGGAGCAGATTGTTGATTCAG
TGCCCGGACGTGTGCCATCTACCAGTGATCAGTC
back to top