CX289855

Overview
NameCX289855
Unique NameCX289855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length425
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289855 vs. ExPASy Swiss-Prot
Match: CML50_ARATH (Probable calcium-binding protein CML50 OS=Arabidopsis thaliana GN=CML50 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.291e-34
Identity = 69/82 (84.15%), Postives = 78/82 (95.12%), Query Frame = 1
Query:    1 ELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFMLAVLPFLIA 246
            ELR+AL+SLG +VSPVVLDLLV+KFDK+GGK++AIEYDNFIECCLTVKGLTEKFKE+DT YSGSATF YE+FML VLPFLIA
Sbjct:  273 ELRDALLSLGFSVSPVVLDLLVSKFDKSGGKNRAIEYDNFIECCLTVKGLTEKFKEKDTAYSGSATFNYESFMLTVLPFLIA 354          
BLAST of CX289855 vs. ExPASy Swiss-Prot
Match: CML49_ARATH (Probable calcium-binding protein CML49 OS=Arabidopsis thaliana GN=CML49 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.434e-33
Identity = 66/82 (80.49%), Postives = 76/82 (92.68%), Query Frame = 1
Query:    1 ELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFMLAVLPFLIA 246
            ELR+ALMSLG +VSPV+LDLLV+KFDK+GG+++AIEYDNFIECCLTVKGLTEKFKE+DT  SGSA F YENFML VLPFL+A
Sbjct:  254 ELRDALMSLGFSVSPVILDLLVSKFDKSGGRNRAIEYDNFIECCLTVKGLTEKFKEKDTALSGSAIFNYENFMLTVLPFLVA 335          
BLAST of CX289855 vs. ExPASy Swiss-Prot
Match: CML48_ARATH (Probable calcium-binding protein CML48 OS=Arabidopsis thaliana GN=CML48 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.136e-14
Identity = 37/80 (46.25%), Postives = 56/80 (70.00%), Query Frame = 1
Query:    1 ELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFMLAVLPFL 240
            +LR+A  +LG  +   V  L+V++FD   GK+  + +D+F+EC + VKGLTEKF+E D  Y+G AT +Y+ FML V+PF+
Sbjct:  145 QLRDAFYNLGCVLPTSVHQLIVSQFDDGTGKTVDLCFDSFLECGMIVKGLTEKFRENDPGYTGYATLSYDVFMLMVIPFI 224          
The following BLAST results are available for this feature:
BLAST of CX289855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CML50_ARATH1.291e-3484.15Probable calcium-binding protein CML50 OS=Arabidop... [more]
CML49_ARATH2.434e-3380.49Probable calcium-binding protein CML49 OS=Arabidop... [more]
CML48_ARATH1.136e-1446.25Probable calcium-binding protein CML48 OS=Arabidop... [more]
back to top
Properties
Property NameValue
Genbank descriptionC02017H02SK IF1 Citrus clementina cDNA clone C02017H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289855 ID=CX289855; Name=CX289855; organism=Citrus clementina; type=EST; length=425bp
GAGTTGCGGGAGGCTCTTATGAGTCTAGGTCTTGCGGTTTCACCCGTGGT
ATTGGACTTGCTTGTCACTAAGTTTGACAAAACTGGTGGCAAAAGCAAGG
CCATTGAATATGATAACTTCATCGAGTGCTGTCTCACGGTTAAGGGGTTA
ACGGAGAAATTTAAGGAGAGGGATACTACGTACTCTGGATCTGCAACTTT
CACTTACGAGAATTTCATGCTGGCTGTTCTGCCATTCCTCATTGCTTAGG
TTTTTAAAATTTGTTGTTTAATAACTTTGAATCGTGGATTTGGTGTGAAT
GTGATGTAACGTTTTAGGTGTTTTCGATGTTTTAATGTGGATAAGCTGCG
TGGCTGTAGTTTACCTCTTAGTTAAATAAAATCAGTGTTATGGTTTGTTT
ATTACTATAAAAAAAAAAAAAAAAA
back to top