CX289858

Overview
NameCX289858
Unique NameCX289858
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289858 vs. ExPASy Swiss-Prot
Match: PDR2_NICPL (Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.073e-75
Identity = 131/207 (63.29%), Postives = 159/207 (76.81%), Query Frame = 3
Query:   15 GLLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLK 635
            G+LFG+IFW+KG +  +QQDL NL GA Y AV FLG+TNA++V SVV+ ERTVFYRERAAGMYS L YAF+QV IE IYVA QT VY L+L+SM+G+ W A +FF+F Y + M F  F++YGMM+VALTP  QI AI+  FFLS WNLFSGFLIPR  IP+WWRWYYW SPVAWT+YG+  SQVGD    +E+ G T  + V + LK
Sbjct: 1215 GILFGVIFWNKGNQIHRQQDLLNLLGATYAAVMFLGATNASAVQSVVAIERTVFYRERAAGMYSELPYAFAQVAIETIYVAIQTFVYSLLLFSMIGYQWTAVKFFYFYYFIFMCFTYFSMYGMMVVALTPGYQIAAIVMSFFLSFWNLFSGFLIPRPLIPVWWRWYYWASPVAWTIYGIFASQVGDRTDELELTGETEKIQVNEFLK 1421          
BLAST of CX289858 vs. ExPASy Swiss-Prot
Match: AB34G_ARATH (ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 2.642e-74
Identity = 131/207 (63.29%), Postives = 156/207 (75.36%), Query Frame = 3
Query:   15 GLLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLK 635
            G+LFGL+FW  G K +K+QDL N FGA+Y AV FLG+TNA +V   V+ ERTVFYRE+AAGMYS + YA SQV +E++Y   QT VY LILYSM+G+ W   +FFWF Y ++  F+ FTLYGMM+VALTP  QI  I   FFLS WNLFSGFLIPR QIPIWWRWYYW SPVAWTLYG++TSQVGD +  V I G    M++K LLK
Sbjct: 1208 GVLFGLLFWQTGTKIEKEQDLNNFFGAMYAAVLFLGATNAATVQPAVAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGYDWTVVKFFWFYYYMLTCFVYFTLYGMMLVALTPNYQIAGICLSFFLSFWNLFSGFLIPRPQIPIWWRWYYWASPVAWTLYGIITSQVGDRDSIVHITG-VGDMSLKTLLK 1413          
BLAST of CX289858 vs. ExPASy Swiss-Prot
Match: AB39G_ARATH (ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.473e-72
Identity = 129/207 (62.32%), Postives = 154/207 (74.40%), Query Frame = 3
Query:   15 GLLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLK 635
            G+LFGLIFW  G KT+ +QDL N FGA+Y AV FLG+ NA +V   ++ ERTVFYRE+AAGMYS + YA SQV +E++Y   QT VY LILYSM+G  W   +F WF Y ++ SF+ FTLYGMM++ALTP  QI  I   FFLSLWNLFSGFLIPR QIPIWWRWYYW +PVAWTLYGL+TSQVGD +  V I G    + +K LLK
Sbjct: 1209 GVLFGLIFWQIGTKTENEQDLNNFFGAMYAAVLFLGALNAATVQPAIAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGCNWTMAKFLWFYYYMLTSFIYFTLYGMMLMALTPNYQIAGICMSFFLSLWNLFSGFLIPRPQIPIWWRWYYWATPVAWTLYGLITSQVGDKDSMVHISG-IGDIDLKTLLK 1414          
BLAST of CX289858 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.404e-67
Identity = 118/206 (57.28%), Postives = 150/206 (72.82%), Query Frame = 3
Query:   18 LLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLK 635
            L+FG +FWD G KTK +QDL N  G++Y AV FLG  NA SV  VV+ ERTVFYRE+AAGMYS + YAF+QV IE+ YV  Q +VY LI+Y+M+GF W A +FFW+L+ +  SF+ FT YGMM VA+TP   I +++S  F  +WNLFSGFLIPR  +P+WW WYYWL PVAWTLYGL+ SQ GDI      P + + M+VKQ ++
Sbjct: 1182 LMFGTMFWDLGGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAAGMYSAMPYAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDITE----PMADSNMSVKQFIR 1383          
BLAST of CX289858 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.518e-66
Identity = 113/206 (54.85%), Postives = 149/206 (72.33%), Query Frame = 3
Query:   18 LLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLK 635
            L+FG +FWD G K  + QDL N  G++Y AV FLG  N++SV  VVS ERTVFYRE+AAGMYS + YAF+QVLIE+ Y+  Q  VY LI+YSM+GF W   +FFW  + +  +F+ FT +GMM VA+TP   + +I++GFF ++WNLFSGF++PR +IPIWWRWYYW  P+AWTLYGLV SQ GD++     P +    TV+Q L+
Sbjct: 1195 LIFGTMFWDIGTKVSRNQDLVNAMGSMYAAVLFLGVQNSSSVQPVVSVERTVFYREKAAGMYSAIPYAFAQVLIEIPYIFVQATVYGLIVYSMIGFEWTVAKFFWDFFFMFFTFLYFTFFGMMTVAVTPNQNVASIVAGFFYTVWNLFSGFIVPRPRIPIWWRWYYWGCPIAWTLYGLVASQFGDLQD----PLTDQNQTVEQFLR 1396          
BLAST of CX289858 vs. ExPASy Swiss-Prot
Match: PDR2_ORYSJ (Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.314e-65
Identity = 112/186 (60.22%), Postives = 137/186 (73.66%), Query Frame = 3
Query:   18 LLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDI 575
            LLFG IFWD G KT K QDL N  G++Y AV F+G  N+ SV  VVS ERTVFYRERAAGMYS   YAF QV IE  Y   Q+++Y +I+YSM+GF W A +FFW+L+ +  +F+ FT YGMM V LTP+  + +I+S  F  +WNLFSGF+IPR ++PIWWRWY W+ PVAWTLYGLV SQ GDI
Sbjct: 1224 LLFGTIFWDLGGKTGKSQDLFNAMGSMYSAVLFIGVLNSQSVQPVVSVERTVFYRERAAGMYSAFPYAFGQVAIEFPYTLVQSIIYGIIVYSMIGFKWTAAKFFWYLFFMFFTFLYFTFYGMMAVGLTPSYHVASIVSSAFYGIWNLFSGFIIPRPKVPIWWRWYCWICPVAWTLYGLVASQFGDI 1409          
BLAST of CX289858 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.995e-65
Identity = 112/206 (54.37%), Postives = 149/206 (72.33%), Query Frame = 3
Query:   18 LLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLK 635
            L+FG +FWD G K  K QDL N  G++Y AV FLG  NA+SV  VV+ ERTVFYRERAAGMYS + YAF QV IE+ Y+  Q+V Y +I+Y+M+GF W   +FFW+L+++  + + FT YGMM VA+TP   + +I++ FF  +WNLFSGF+IPR ++P+WWRWYYW +PVAWTLYGLV SQ GDI+  +     +   TV+Q L+
Sbjct: 1194 LIFGTMFWDLGTKVSKSQDLLNAMGSMYAAVLFLGVQNASSVQPVVAIERTVFYRERAAGMYSAIPYAFGQVSIEIPYIFVQSVFYGIIVYAMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMGVAVTPNQNVASIVAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWANPVAWTLYGLVASQFGDIQTKL-----SDNETVEQFLR 1394          

HSP 2 Score: 68.9366 bits (167), Expect = 3.180e-11
Identity = 41/176 (23.30%), Postives = 87/176 (49.43%), Query Frame = 3
Query:   90 GALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFF-WFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATM 614
            GAL+  V  +   N  S +++   +  VFY++R    + + AYA    ++++     +  ++V++ Y ++GF     RF   FL +++++ M   ++   I A+     + +    F L L     GF++ R  +  WW W YW+SP+ +++  ++ ++    + N  +PG   T+
Sbjct:  568 GALFFVVIMI-MFNGMSELAMTIFKLPVFYKQRDLLFFPSWAYAIPSWILKIPVTLVEVGLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMF-RFIGAVGRTMGVASTFGSFALLLQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWNHIVPGGNETL 741          
BLAST of CX289858 vs. ExPASy Swiss-Prot
Match: PDR5_ORYSJ (Pleiotropic drug resistance protein 5 OS=Oryza sativa subsp. japonica GN=PDR5 PE=2 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 1.453e-64
Identity = 107/207 (51.69%), Postives = 150/207 (72.46%), Query Frame = 3
Query:   15 GLLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLK 635
            GL+FG +FW +G+  +   DL NL GA Y AVFFLG+ N  +++ VVS ERTVFYRE+AAGMYS L+YAF+Q  +E  Y A Q V+Y +++YSM+G+ WKA +FF+FL+ ++ +F  FTL+ MM+VA T +  + A+L  F LS WN F+GF+IPR  IP+WWRW+YW +PV+WT+YG++ SQ  D +  V +PG + TM VK  L+
Sbjct: 1208 GLVFGTVFWRRGKNIESVNDLNNLLGATYAAVFFLGAANLLTLLPVVSVERTVFYREKAAGMYSPLSYAFAQGFVEFCYSAVQGVLYTILIYSMIGYEWKADKFFYFLFFMIAAFAYFTLFSMMLVACTASEMLAAVLVSFVLSSWNNFAGFIIPRPLIPVWWRWFYWANPVSWTIYGVIASQFADSDRVVTVPGQSTTMVVKDFLE 1414          
BLAST of CX289858 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.898e-64
Identity = 112/199 (56.28%), Postives = 144/199 (72.36%), Query Frame = 3
Query:   18 LLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATM 614
            L+FG +FW+ G +TKKQQDL N  G++Y AV ++G  N+ SV  VV  ERTVFYRERAAGMYS   YAF QV IEL Y+  QT++Y +++YSM+GF W   +F W+L+ +  + + FT YGMM V LTP   I AI+S  F ++WNLFSG+LIPR +IP+WWRWY W+ PVAWTLYGLV SQ GDI+  +E  G T T+
Sbjct: 1209 LMFGTMFWNLGTRTKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVVVERTVFYRERAAGMYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYFTLLYFTFYGMMAVGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVAWTLYGLVASQFGDIQHVLE--GDTRTV 1405          
BLAST of CX289858 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSJ (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.238e-64
Identity = 112/191 (58.64%), Postives = 137/191 (71.73%), Query Frame = 3
Query:   18 LLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVE 590
            LLFG IFWD G K  K QDL N  G++Y AV F+G  N  SV  VV+ ERTVFYRERAAGMYS   YAF QV+IE+ Y   Q  VY +I+Y+M+GF W A +FFW+L+ ++ + + FT YGMM V LTP   I +I+S  F ++WNLFSGF+IPR ++PIWWRWY W  PVAWTLYGLV SQ GDIE  +E
Sbjct: 1217 LLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDIETPME 1407          
The following BLAST results are available for this feature:
BLAST of CX289858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
PDR2_NICPL1.073e-7563.29Pleiotropic drug resistance protein 2 OS=Nicotiana... [more]
AB34G_ARATH2.642e-7463.29ABC transporter G family member 34 OS=Arabidopsis ... [more]
AB39G_ARATH2.473e-7262.32ABC transporter G family member 39 OS=Arabidopsis ... [more]
AB40G_ARATH1.404e-6757.28ABC transporter G family member 40 OS=Arabidopsis ... [more]
PDR1_NICPL4.518e-6654.85Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR2_ORYSJ1.314e-6560.22Probable pleiotropic drug resistance protein 2 OS=... [more]
PDR1_TOBAC4.995e-6554.37Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR5_ORYSJ1.453e-6451.69Pleiotropic drug resistance protein 5 OS=Oryza sat... [more]
PDR4_ORYSJ1.898e-6456.28Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]
PDR3_ORYSJ3.238e-6458.64Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC02017H05SK IF1 Citrus clementina cDNA clone C02017H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289858 ID=CX289858; Name=CX289858; organism=Citrus clementina; type=EST; length=742bp
GAATTCGGCACGAGGGTCTTCTGTTTGGTCTTATCTTCTGGGACAAAGGA
CAGAAGACAAAGAAGCAACAAGATCTTCAGAATCTTTTCGGAGCTTTGTA
CTGTGCTGTGTTTTTCCTTGGATCCACCAATGCAAACTCAGTAATGTCCG
TAGTCTCCACGGAGAGAACAGTTTTCTACCGCGAAAGAGCTGCTGGAATG
TACTCTACACTAGCTTACGCTTTTTCGCAGGTGCTTATAGAGTTGATATA
TGTGGCATTTCAAACTGTCGTGTATGTTCTGATCCTATACTCCATGATGG
GATTTGCGTGGAAAGCAAAAAGATTCTTCTGGTTCTTGTACATGGTAATG
ATGTCCTTTATGCAATTCACATTGTATGGGATGATGATTGTCGCACTGAC
TCCAGCTCCGCAAATTGGTGCCATACTTTCCGGATTCTTCCTCTCCCTGT
GGAATTTGTTCTCTGGTTTTCTCATTCCTCGCGTGCAAATCCCAATTTGG
TGGAGGTGGTACTACTGGCTCTCTCCCGTTGCTTGGACACTCTATGGCCT
TGTTACAAGTCAAGTTGGTGACATAGAAGGCAACGTGGAAATTCCGGGAA
GCACCGCTACGATGACAGTGAAGCAGCTTCTAAAGATAGTTTCGGGTTCA
AGTATGACTTCCCTTCCGTTGTTGCTGTAGTCAAACTTGTCTGGCTTCTC
GCCTTCGTCTTTGTGTTTACCCTTGCCATCACCTTATTAACT
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