CX289859

Overview
NameCX289859
Unique NameCX289859
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289859 vs. ExPASy Swiss-Prot
Match: TBC17_HUMAN (TBC1 domain family member 17 OS=Homo sapiens GN=TBC1D17 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.674e-18
Identity = 56/126 (44.44%), Postives = 73/126 (57.94%), Query Frame = 3
Query:   15 DVIRTDRTLVFYEKQEN--LSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLGMI*NIRFCL*F-WVIIYSK 383
            DV RTDRT  FYE  EN  L  L DIL  Y     D+GY QGMSDL SP++ +++NE DAFWCF   M  ++GNF   ES   ++ QL  L  + +V+DP L   L    +   C  F W++I+ K
Sbjct:  378 DVSRTDRTNKFYEGPENPGLGLLNDILLTYCMYHFDLGYVQGMSDLLSPILYVIQNEVDAFWCFCGFMELVQGNFE--ESQETMKRQLGRLLLLLRVLDPLLCDFLDSQDSGSLCFCFRWLLIWFK 501          
BLAST of CX289859 vs. ExPASy Swiss-Prot
Match: TBC15_MOUSE (TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.674e-18
Identity = 49/99 (49.49%), Postives = 65/99 (65.66%), Query Frame = 3
Query:   15 DVIRTDRTLVFYEKQEN--LSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVID 305
            DV RTDRT  FYE Q+N  L  L DIL  Y   D D+GY QGMSDL SP++ ++ENE DAFWCF   M ++  NF   E   G++TQL  L+++ +++D
Sbjct:  397 DVNRTDRTNKFYEGQDNPGLILLHDILMTYCMYDFDLGYVQGMSDLLSPLLYVMENEVDAFWCFASYMDQMHQNFE--EQMQGMKTQLIQLSTLLRLLD 493          
BLAST of CX289859 vs. ExPASy Swiss-Prot
Match: TBC15_HUMAN (TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.674e-18
Identity = 49/99 (49.49%), Postives = 65/99 (65.66%), Query Frame = 3
Query:   15 DVIRTDRTLVFYEKQEN--LSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVID 305
            DV RTDRT  FYE Q+N  L  L DIL  Y   D D+GY QGMSDL SP++ ++ENE DAFWCF   M ++  NF   E   G++TQL  L+++ +++D
Sbjct:  414 DVNRTDRTNKFYEGQDNPGLILLHDILMTYCMYDFDLGYVQGMSDLLSPLLYVMENEVDAFWCFASYMDQMHQNFE--EQMQGMKTQLIQLSTLLRLLD 510          
BLAST of CX289859 vs. ExPASy Swiss-Prot
Match: TBC17_MOUSE (TBC1 domain family member 17 OS=Mus musculus GN=Tbc1d17 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.855e-18
Identity = 56/126 (44.44%), Postives = 72/126 (57.14%), Query Frame = 3
Query:   15 DVIRTDRTLVFYEKQEN--LSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLGMI*NIRFCL*F-WVIIYSK 383
            DV RTDRT  FYE  EN  LS L DIL  Y     D+GY QGMSDL SP++ +++NE DAFWCF   M  + GNF   ES   ++ QL  L  + +V+D  L   L    +   C  F W++I+ K
Sbjct:  378 DVSRTDRTNKFYEGPENPGLSLLHDILLTYCMYHFDLGYVQGMSDLLSPILFVVQNEVDAFWCFCGFMELVHGNFE--ESQETMKRQLGQLLLLLRVLDQPLCDFLDSQDSGSLCFCFRWLLIWFK 501          
BLAST of CX289859 vs. ExPASy Swiss-Prot
Match: SGSM2_MOUSE (Small G protein signaling modulator 2 OS=Mus musculus GN=Sgsm2 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14
Identity = 44/133 (33.08%), Postives = 77/133 (57.89%), Query Frame = 3
Query:    3 QIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKL----HQHLGMI*NIRFCL*FWVIIYSKNV 389
            +I  DV R DR   +Y    NL +L DI+  Y W   D+GY QGM DL +P++++L+N+  A+ CF  LM+R+  NF    S   +++  +N+ S+ Q++D +L    HQ+ G   +  FC  ++++ + + +
Sbjct:  795 RIDKDVQRCDRNY-WYFTTSNLERLRDIMCSYVWEHLDMGYVQGMCDLLAPLLVILDNDQLAYSCFSHLMKRMGQNF---PSGGAMDSHFANMRSLIQILDSELFELMHQN-GDYTHFYFCYRWFLLDFKREL 922          
BLAST of CX289859 vs. ExPASy Swiss-Prot
Match: SGSM2_HUMAN (Small G protein signaling modulator 2 OS=Homo sapiens GN=SGSM2 PE=1 SV=4)

HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14
Identity = 44/133 (33.08%), Postives = 76/133 (57.14%), Query Frame = 3
Query:    3 QIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKL----HQHLGMI*NIRFCL*FWVIIYSKNV 389
            +I  DV R DR   +Y    NL +L D++  Y W   DVGY QGM DL +P+++ L+N+  A+ CF  LM+R+  NF    +   ++T  +N+ S+ Q++D +L    HQ+ G   +  FC  ++++ + + +
Sbjct:  796 RIDKDVQRCDRNY-WYFTPPNLERLRDVMCSYVWEHLDVGYVQGMCDLLAPLLVTLDNDQLAYSCFSHLMKRMSQNF---PNGGAMDTHFANMRSLIQILDSELFELMHQN-GDYTHFYFCYRWFLLDFKREL 923          
BLAST of CX289859 vs. ExPASy Swiss-Prot
Match: SGSM1_MOUSE (Small G protein signaling modulator 1 OS=Mus musculus GN=Sgsm1 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 9.505e-14
Identity = 45/133 (33.83%), Postives = 78/133 (58.65%), Query Frame = 3
Query:    3 QIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKL----HQHLGMI*NIRFCL*FWVIIYSKNV 389
            +I  DV R DR+  +Y    NL KL +I+  Y W   ++GY QGM DL +P++++L++EA AF CF  LM+R+  NF        ++T  +N+ S+ Q++D +L    HQ+ G   +  FC  ++++ + + +
Sbjct:  883 RIEKDVQRCDRSY-WYFTAANLEKLRNIMCSYIWQHIEIGYVQGMCDLLAPLLVILDDEALAFSCFTELMKRMNQNF---PHGGAMDTHFANMRSLIQILDSELFELMHQN-GDYTHFYFCYRWFLLDFKREL 1010          
BLAST of CX289859 vs. ExPASy Swiss-Prot
Match: SGSM1_HUMAN (Small G protein signaling modulator 1 OS=Homo sapiens GN=SGSM1 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.241e-13
Identity = 45/133 (33.83%), Postives = 77/133 (57.89%), Query Frame = 3
Query:    3 QIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKL----HQHLGMI*NIRFCL*FWVIIYSKNV 389
            +I  DV R DR   +Y    NL KL +I+  Y W   ++GY QGM DL +P++++L++EA AF CF  LM+R+  NF        ++T  +N+ S+ Q++D +L    HQ+ G   +  FC  ++++ + + +
Sbjct:  938 RIEKDVQRCDRNY-WYFTPANLEKLRNIMCSYIWQHIEIGYVQGMCDLLAPLLVILDDEALAFSCFTELMKRMNQNF---PHGGAMDTHFANMRSLIQILDSELFELMHQN-GDYTHFYFCYRWFLLDFKREL 1065          
BLAST of CX289859 vs. ExPASy Swiss-Prot
Match: TBC25_MOUSE (TBC1 domain family member 25 OS=Mus musculus GN=Tbc1d25 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.047e-13
Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = 3
Query:   15 DVIRTDRTLVFYEKQEN---LSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHL 326
            DV+RTDR   +Y   E+   L  L D+L  YA     V YCQGMSDL SP++ ++++E  AF CF  +M+RL  NF        + T+ ++L  + +  DP  +Q+L
Sbjct:  345 DVLRTDRAHPYYAGPEDGPHLRALHDLLTTYAVTHPQVSYCQGMSDLASPILAVMDHEGHAFVCFCGIMKRLAANFH--PDGRAMATKFAHLKLLLRHADPDFYQYL 449          
BLAST of CX289859 vs. ExPASy Swiss-Prot
Match: TBC25_HUMAN (TBC1 domain family member 25 OS=Homo sapiens GN=TBC1D25 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.047e-13
Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = 3
Query:   15 DVIRTDRTLVFYEKQEN---LSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHL 326
            DV+RTDR   +Y   E+   L  L D+L  YA     V YCQGMSDL SP++ ++++E  AF CF  +M+RL  NF        + T+ ++L  + +  DP  +Q+L
Sbjct:  291 DVLRTDRAHPYYAGPEDGPHLRALHDLLTTYAVTHPQVSYCQGMSDLASPILAVMDHEGHAFVCFCGIMKRLAANFH--PDGRAMATKFAHLKLLLRHADPDFYQYL 395          
The following BLAST results are available for this feature:
BLAST of CX289859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
TBC17_HUMAN1.674e-1844.44TBC1 domain family member 17 OS=Homo sapiens GN=TB... [more]
TBC15_MOUSE1.674e-1849.49TBC1 domain family member 15 OS=Mus musculus GN=Tb... [more]
TBC15_HUMAN1.674e-1849.49TBC1 domain family member 15 OS=Homo sapiens GN=TB... [more]
TBC17_MOUSE2.855e-1844.44TBC1 domain family member 17 OS=Mus musculus GN=Tb... [more]
SGSM2_MOUSE7.278e-1433.08Small G protein signaling modulator 2 OS=Mus muscu... [more]
SGSM2_HUMAN7.278e-1433.08Small G protein signaling modulator 2 OS=Homo sapi... [more]
SGSM1_MOUSE9.505e-1433.83Small G protein signaling modulator 1 OS=Mus muscu... [more]
SGSM1_HUMAN1.241e-1333.83Small G protein signaling modulator 1 OS=Homo sapi... [more]
TBC25_MOUSE8.047e-1338.32TBC1 domain family member 25 OS=Mus musculus GN=Tb... [more]
TBC25_HUMAN8.047e-1338.32TBC1 domain family member 25 OS=Homo sapiens GN=TB... [more]

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Properties
Property NameValue
Genbank descriptionC02017H06SK IF1 Citrus clementina cDNA clone C02017H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289859 ID=CX289859; Name=CX289859; organism=Citrus clementina; type=EST; length=662bp
ATCAAATAGGTCTTGATGTGATTCGCACTGACAGGACATTGGTGTTTTAT
GAGAAGCAAGAAAACTTGTCGAAACTTTGGGATATTCTAGCTGTTTATGC
CTGGGTAGATAGAGATGTTGGCTATTGTCAAGGAATGAGTGATCTTTGTT
CCCCCATGATAATTCTGCTTGAAAATGAAGCTGATGCATTTTGGTGCTTC
GAACGTTTGATGCGCAGATTGCGAGGAAATTTCAGATGCACTGAGAGCTC
TGTTGGGGTGGAGACACAACTTAGTAATTTGGCTTCAATTACTCAGGTTA
TCGATCCAAAACTTCATCAACATTTAGGTATGATCTAGAATATACGTTTT
TGCTTGTAATTTTGGGTAATAATATACAGCAAAAATGTCTCAAATAATCT
CGCATCTCAGTCAGTGTAAGCCAGTTTACACTTATTCATTAGCAACTCAC
AAATCTTTGCTTTGTCATTTTAACAAGAAGCTGACAATGAAAGTATGTAG
GCTCAAAATTTTTTACCAGTCCTGTGTGCTACTGGGTAGAAAGCCCAAAA
ATAACTCTTTAAAATGTTTGTTGGCAAAGGCTTTATGTTTTCTGATTCAA
AACAAGGGAATTATGTTTGCTTTCTTTTATCCAAAACAATTTTTTGTGCT
CCCCACAAAGCA
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