CX289860

Overview
NameCX289860
Unique NameCX289860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289860 vs. ExPASy Swiss-Prot
Match: SCP51_ARATH (Serine carboxypeptidase-like 51 OS=Arabidopsis thaliana GN=SCPL51 PE=2 SV=2)

HSP 1 Score: 251.136 bits (640), Expect = 3.624e-66
Identity = 129/220 (58.64%), Postives = 154/220 (70.00%), Query Frame = 2
Query:    2 AESYGGKFAATLGLAAVXXXXXXXXXXXXXXXXXXDSWISPEDFVFSWGPLLKDVSRLDTNGFAKSNQIAQKIKQQLEAGEFVGATDSWAQLESVISQNSNAVDFYNFLLDSGMDPVSLTAS-TLAVGASMRKYSRYLSAHK--SSTPDGDGDVGSLMNGVIKKKLKIIPENITWGGQSDSVFTELSGDFMRPRISEVDELLAKGVNVTVYNGQLDVICS 652
            AESYGGK A  LGL+ +                  DSWISPEDFVFSWGPLLK VSRLD NG   SN +A+KIK Q++ GE+VGAT +W  LE++IS  SN VDFYNFLLD+GMDPVSLT S  +     ++KYSRYL+  +  S   D +GD+  LMNGVIKKKLKIIP ++ WG  SD VFT +   FM+P I +VDELLA GV+VT+YNGQLDVICS
Sbjct:  164 AESYGGKIAVKLGLSVIDAVQSGKLKLHLGGVILGDSWISPEDFVFSWGPLLKHVSRLDDNGLDSSNSLAEKIKTQIKNGEYVGATQTWMDLENLISSKSNFVDFYNFLLDTGMDPVSLTTSLKIKKEEKIKKYSRYLNDMRSLSDVEDVEGDLDKLMNGVIKKKLKIIPNDLIWGNNSDDVFTAMEAAFMKPVIEDVDELLATGVDVTIYNGQLDVICS 383          
BLAST of CX289860 vs. ExPASy Swiss-Prot
Match: RISC_HUMAN (Retinoid-inducible serine carboxypeptidase OS=Homo sapiens GN=SCPEP1 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.435e-38
Identity = 92/220 (41.82%), Postives = 125/220 (56.82%), Query Frame = 2
Query:    2 AESYGGKFAATLGLAAVXXXXXXXXXXXXXXXXXXDSWISPEDFVFSWGPLLKDVSRLDTNGFAKSNQIAQKIKQQLEAGEFVGATDSWAQLESVISQNSNAVDFYNFLLDSGMDPVSLTASTLAVGAS-----MRKYSRYLSAHKSSTPDGDGDVGSLMNGVIKKKLKIIPENITWGGQSDSVFTELSGDFMRPRISEVDELLAKGVNVTVYNGQLDVI 646
            +ESYGGK AA +GL                     DSWISP D V SWGP L  +S L+  G A+ +++A+++   +  G +  AT+ W + E +I QN++ V+FYN L  S   P S   S+L    S      +++ R+L     S          LMNG I+KKLKIIPE+ +WGGQ+ +VF  +  DFM+P IS VDELL  G+NVTVYNGQLD+I
Sbjct:  165 SESYGGKMAAGIGLELYKAIQRGTIKCNFAGVALGDSWISPVDSVLSWGPYLYSMSLLEDKGLAEVSKVAEQVLNAVNKGLYREATELWGKAEMIIEQNTDGVNFYNILTKS--TPTSTMESSLEFTQSHLVCLCQRHVRHLQRDALS---------QLMNGPIRKKLKIIPEDQSWGGQATNVFVNMEEDFMKPVISIVDELLEAGINVTVYNGQLDLI 373          
BLAST of CX289860 vs. ExPASy Swiss-Prot
Match: RISC_MOUSE (Retinoid-inducible serine carboxypeptidase OS=Mus musculus GN=Scpep1 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.448e-38
Identity = 89/215 (41.40%), Postives = 120/215 (55.81%), Query Frame = 2
Query:    2 AESYGGKFAATLGLAAVXXXXXXXXXXXXXXXXXXDSWISPEDFVFSWGPLLKDVSRLDTNGFAKSNQIAQKIKQQLEAGEFVGATDSWAQLESVISQNSNAVDFYNFLLDSGMDPVSLTASTLAVGASMRKYSRYLSAHKSSTPDGDGDVGSLMNGVIKKKLKIIPENITWGGQSDSVFTELSGDFMRPRISEVDELLAKGVNVTVYNGQLDVI 646
            +ESYGGK AA + +                     DSWISP D V SWGP L  +S LD  G A  + IA+++   +  G +  AT  W + E +I +N++ V+FYN L  S  +    ++        +R   R++   +     GD  +  LMNG IKKKLKIIPE+I+WG Q+  VF  + GDFM+P I  VD+LLA GVNVTVYNGQLD+I
Sbjct:  165 SESYGGKMAAGISVELYKAVQQGTIKCNFSGVALGDSWISPVDSVLSWGPYLYSMSLLDNQGLAMVSDIAEQVLDAVNKGFYKEATQLWGKAEMIIEKNTDGVNFYNILTKSSPEKAMESSLEFLRSPLVRLCQRHVRHLQ-----GDA-LSQLMNGPIKKKLKIIPEDISWGAQASYVFLSMEGDFMKPAIDVVDKLLAAGVNVTVYNGQLDLI 373          
BLAST of CX289860 vs. ExPASy Swiss-Prot
Match: RISC_RAT (Retinoid-inducible serine carboxypeptidase OS=Rattus norvegicus GN=Scpep1 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.706e-37
Identity = 90/215 (41.86%), Postives = 119/215 (55.35%), Query Frame = 2
Query:    2 AESYGGKFAATLGLAAVXXXXXXXXXXXXXXXXXXDSWISPEDFVFSWGPLLKDVSRLDTNGFAKSNQIAQKIKQQLEAGEFVGATDSWAQLESVISQNSNAVDFYNFLLDSGMDPVSLTASTLAVGASMRKYSRYLSAHKSSTPDGDGDVGSLMNGVIKKKLKIIPENITWGGQSDSVFTELSGDFMRPRISEVDELLAKGVNVTVYNGQLDVI 646
            +ESYGGK AA + L                     DSWISP D V SWGP L  VS LD  G A+ + IA+++   +  G +  AT  W + E +I +N++ V+FYN L  S  D    ++        +R   R++   +     GD  +  LMNG IKKKLKIIP++++WG QS SVF  +  DFM+P I  VD LL  GVNVTVYNGQLD+I
Sbjct:  165 SESYGGKMAAGISLELHKAIQQGTIKCNFSGVALGDSWISPVDSVLSWGPYLYSVSLLDNKGLAEVSDIAEQVLNAVNKGFYKEATQLWGKAEMIIEKNTDGVNFYNILTKSTPDTSMESSLEFFRSPLVRLCQRHVRHLQ-----GDA-LSQLMNGPIKKKLKIIPDDVSWGAQSSSVFISMEEDFMKPVIDIVDTLLELGVNVTVYNGQLDLI 373          
The following BLAST results are available for this feature:
BLAST of CX289860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SCP51_ARATH3.624e-6658.64Serine carboxypeptidase-like 51 OS=Arabidopsis tha... [more]
RISC_HUMAN1.435e-3841.82Retinoid-inducible serine carboxypeptidase OS=Homo... [more]
RISC_MOUSE2.448e-3841.40Retinoid-inducible serine carboxypeptidase OS=Mus ... [more]
RISC_RAT2.706e-3741.86Retinoid-inducible serine carboxypeptidase OS=Ratt... [more]
back to top
Properties
Property NameValue
Genbank descriptionC02017H07SK IF1 Citrus clementina cDNA clone C02017H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289860 ID=CX289860; Name=CX289860; organism=Citrus clementina; type=EST; length=652bp
GGCAGAGTCTTATGGAGGCAAATTTGCTGCAACTCTCGGACTGGCAGCCG
TTAAAGCCATTGAAGCTGGAAAGTTAAAGCTCAAACTTGGAGGAGTTGCC
TTGGGAGATAGTTGGATCTCACCAGAGGATTTTGTGTTTTCGTGGGGGCC
TCTACTTAAAGATGTGTCAAGGCTTGATACCAATGGCTTCGCAAAATCAA
ATCAAATAGCTCAAAAGATTAAGCAGCAGCTTGAAGCTGGTGAATTTGTT
GGTGCCACAGACTCATGGGCGCAACTTGAGAGTGTGATTAGTCAAAACAG
CAACGCTGTGGATTTTTACAATTTTCTACTGGATTCGGGCATGGACCCGG
TGTCTTTAACAGCATCAACATTAGCAGTAGGAGCTTCAATGAGAAAATAC
TCAAGATATCTCAGTGCCCATAAATCTTCCACCCCTGATGGTGATGGTGA
TGTTGGTAGCTTGATGAATGGTGTTATAAAAAAGAAGCTCAAGATTATCC
CAGAAAACATTACATGGGGAGGACAATCAGACTCTGTTTTCACAGAGCTT
TCTGGTGACTTTATGAGGCCAAGGATTAGTGAGGTTGATGAGCTACTTGC
CAAGGGAGTGAATGTGACTGTGTATAATGGGCAACTTGATGTTATTTGTT
CA
back to top