CX289862

Overview
NameCX289862
Unique NameCX289862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length626
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289862 vs. ExPASy Swiss-Prot
Match: RL182_ARATH (60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 1.956e-42
Identity = 82/89 (92.13%), Postives = 87/89 (97.75%), Query Frame = 2
Query:    2 VTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV 268
            VTALRFTE ARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHSH+KPYVR+KGRKFE+ARGKR SRGF+V
Sbjct:   99 VTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKRKSRGFKV 187          
BLAST of CX289862 vs. ExPASy Swiss-Prot
Match: RL183_ARATH (60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 7.433e-42
Identity = 82/89 (92.13%), Postives = 86/89 (96.63%), Query Frame = 2
Query:    2 VTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV 268
            VTALRFTE ARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHS+TKPYVR KGRKFE+ARGKR SRGF+V
Sbjct:   99 VTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKRKSRGFKV 187          
BLAST of CX289862 vs. ExPASy Swiss-Prot
Match: RL18_CICAR (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.187e-39
Identity = 80/89 (89.89%), Postives = 85/89 (95.51%), Query Frame = 2
Query:    2 VTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV 268
            VTAL+FTETARARI+KAGGECLTFDQLALR PL  +TVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE+ARG+R SRGFRV
Sbjct:   96 VTALKFTETARARIQKAGGECLTFDQLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV 183          
BLAST of CX289862 vs. ExPASy Swiss-Prot
Match: RL181_ARATH (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 2.316e-35
Identity = 73/90 (81.11%), Postives = 78/90 (86.67%), Query Frame = 2
Query:    2 VTALRFTETARARIEKAGGECLTFDQLALRAPL-GQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV 268
            VTALRFTE+ARARI KAGGECLTFDQLAL  P   +NTVLLRGPKN REAVKHFGPAPGVPHSHTKPYVR  G+K E ARG+R SRGF+V
Sbjct:   99 VTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGRRRSRGFKV 188          
BLAST of CX289862 vs. ExPASy Swiss-Prot
Match: RL18_IXOSC (60S ribosomal protein L18 OS=Ixodes scapularis GN=RpL18 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.307e-33
Identity = 66/86 (76.74%), Postives = 77/86 (89.53%), Query Frame = 2
Query:    8 ALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 265
            ALR TE ARARI KAGGE LTFDQLA++AP G+ TVL++GP+N+REA +HFGPAPGVPHSHTKPYVRSKGRKFERARG+R SR ++
Sbjct:  102 ALRVTERARARILKAGGEILTFDQLAVQAPKGKGTVLMQGPRNSREACRHFGPAPGVPHSHTKPYVRSKGRKFERARGRRKSRRYK 187          
BLAST of CX289862 vs. ExPASy Swiss-Prot
Match: RL18_TIMBA (60S ribosomal protein L18 OS=Timarcha balearica GN=RpL18 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.339e-32
Identity = 66/88 (75.00%), Postives = 75/88 (85.23%), Query Frame = 2
Query:    2 VTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 265
            + ALR T+TARA I KAGGE +TFDQLALR+P G  TVLL+G +NAREAVKHFGPAPGVPHSH KP VRSKGRKFERARG+R S G++
Sbjct:  100 ICALRVTQTARAGILKAGGEVITFDQLALRSPTGSKTVLLQGKRNAREAVKHFGPAPGVPHSHAKPLVRSKGRKFERARGRRRSCGYK 187          
BLAST of CX289862 vs. ExPASy Swiss-Prot
Match: RL18_CAEEL (60S ribosomal protein L18 OS=Caenorhabditis elegans GN=rpl-18 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.107e-32
Identity = 65/88 (73.86%), Postives = 75/88 (85.23%), Query Frame = 2
Query:    2 VTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 265
            V AL  TE ARARI  AGGE +T DQLAL++P G+NTV L+GP++AREA KHFGPAPGVPHSHTKPYVRSKGRKFERARG+R SR ++
Sbjct:  100 VAALHVTEGARARILAAGGEIITLDQLALKSPKGENTVFLQGPRSAREAEKHFGPAPGVPHSHTKPYVRSKGRKFERARGRRASRAYK 187          
BLAST of CX289862 vs. ExPASy Swiss-Prot
Match: RL18_CAEBR (60S ribosomal protein L18 OS=Caenorhabditis briggsae GN=rpl-18 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.461e-31
Identity = 64/88 (72.73%), Postives = 75/88 (85.23%), Query Frame = 2
Query:    2 VTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 265
            + AL  TE ARARI  AGGE +T DQLALR+P G+NTV L+GP++AREA KHFGPAPGVPHSHTKP+VRSKGRKFERARG+R SR ++
Sbjct:  100 LAALHVTEGARARILAAGGEIITLDQLALRSPKGENTVFLQGPRSAREAEKHFGPAPGVPHSHTKPHVRSKGRKFERARGRRASRAYK 187          
BLAST of CX289862 vs. ExPASy Swiss-Prot
Match: RL18_DIACI (60S ribosomal protein L18 OS=Diaphorina citri GN=RpL18 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.903e-31
Identity = 63/88 (71.59%), Postives = 76/88 (86.36%), Query Frame = 2
Query:    2 VTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 265
            V ALR T+ AR+RI KAGGE +TFDQLALRAP G+NTVL++G +  REA KHFGPAPGVPHSHTK +VRSKGR+FERARG+R S+G++
Sbjct:  100 VCALRVTDKARSRILKAGGEIITFDQLALRAPTGKNTVLMQGKRTGREANKHFGPAPGVPHSHTKAHVRSKGRQFERARGRRTSKGYK 187          
BLAST of CX289862 vs. ExPASy Swiss-Prot
Match: RL18_DROME (60S ribosomal protein L18 OS=Drosophila melanogaster GN=RpL18 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.007e-30
Identity = 64/88 (72.73%), Postives = 75/88 (85.23%), Query Frame = 2
Query:    2 VTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 265
            V AL  T+TAR RI KAGGE LTFDQLALR+P G+NT+LL+G + AR A KHFG APGVPHSHT+PYVRSKGRKFERARG+R+S G++
Sbjct:  100 VCALHVTQTARERILKAGGEVLTFDQLALRSPTGKNTLLLQGRRTARTACKHFGKAPGVPHSHTRPYVRSKGRKFERARGRRSSCGYK 187          
The following BLAST results are available for this feature:
BLAST of CX289862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL182_ARATH1.956e-4292.1360S ribosomal protein L18-2 OS=Arabidopsis thalian... [more]
RL183_ARATH7.433e-4292.1360S ribosomal protein L18-3 OS=Arabidopsis thalian... [more]
RL18_CICAR1.187e-3989.8960S ribosomal protein L18 (Fragment) OS=Cicer arie... [more]
RL181_ARATH2.316e-3581.11Putative 60S ribosomal protein L18-1 OS=Arabidopsi... [more]
RL18_IXOSC6.307e-3376.7460S ribosomal protein L18 OS=Ixodes scapularis GN=... [more]
RL18_TIMBA5.339e-3275.0060S ribosomal protein L18 OS=Timarcha balearica GN... [more]
RL18_CAEEL9.107e-3273.8660S ribosomal protein L18 OS=Caenorhabditis elegan... [more]
RL18_CAEBR3.461e-3172.7360S ribosomal protein L18 OS=Caenorhabditis briggs... [more]
RL18_DIACI5.903e-3171.5960S ribosomal protein L18 OS=Diaphorina citri GN=R... [more]
RL18_DROME1.007e-3072.7360S ribosomal protein L18 OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionC02017H09SK IF1 Citrus clementina cDNA clone C02017H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289862 ID=CX289862; Name=CX289862; organism=Citrus clementina; type=EST; length=626bp
GGTTACTGCACTGAGGTTCACAGAGACAGCAAGGGCAAGAATTGAGAAGG
CAGGGGGAGAATGCTTGACATTTGACCAACTGGCTCTTCGTGCTCCTTTG
GGTCAGAACACGGTTCTCCTGAGAGGTCCGAAGAATGCTCGTGAGGCTGT
CAAGCACTTTGGACCTGCTCCTGGTGTACCACACAGCCACACCAAACCCT
ATGTGCGATCTAAGGGAAGAAAATTTGAGAGGGCTAGAGGAAAAAGGAAC
AGCAGAGGCTTCAGGGTTTGAGATGCAGAACTCATTCATAAGGATACAGA
GCAGCCGACCACCTTATGCAAATGTTGTGTTTTCTTTTTTTCTCCTTGCT
ATTTTAAATCTCTTGGGACAATATCTTAGCAAGTTATATTTGGATTTTTG
GATTTTTTTTTTGTTTGAGACAGATCTTGGATGTCCTTCGGGGCTTGATG
TTTAGAAGTGAAGACAGGATGCCTCATTTAAAAGTTGCCCAAGTTCTACA
CACATACATGCATGCCTAGTTGAATTAAAATGAACCATGAGAACTGGTTT
TAGTTTTGTTGTGGATGTTGCTTTGTGCTAAATACTGCCACATTTGTCGT
AAAAAAAAAAAAAAAAAAAAAAAAAA
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