CX289864

Overview
NameCX289864
Unique NameCX289864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX289864 vs. ExPASy Swiss-Prot
Match: NAC78_ARATH (NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.207e-19
Identity = 54/113 (47.79%), Postives = 74/113 (65.49%), Query Frame = 1 
Query:   52 GQHQAEVHGNDVASTSEQKPDIVKSESDVKYPFLKQASQMLGNVAAAPAFASEFPTKDAALRLNSLAHPSSSVHVTAGMIRIRNITLSG-SGLDWSVGKNGDMNIVFSFDLSQ 387
            G+   E   +   S+S+Q  D    +S  KYPFLK+ S MLG +    +FAS+F TKD A+RL++ A  S SVHVTAGM+RI N+TL+  SG+ WS  KNG++N+V SF + Q
Sbjct:  413 GKEAVEEKESGEGSSSKQDTDFKDFDSAPKYPFLKKTSHMLGAIPTPSSFASQFQTKD-AMRLHA-AQSSGSVHVTAGMMRISNMTLAADSGMGWSYDKNGNLNVVLSFGVVQ 523
The following BLAST results are available for this feature:
BLAST of CX289864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NAC78_ARATH5.207e-1947.79NAC domain-containing protein 78 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionC02017H11SK IF1 Citrus clementina cDNA clone C02017H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289864 ID=CX289864; Name=CX289864; organism=Citrus clementina; type=EST; length=723bp
GCACCTCTCACAACAGAGGTGACTGAAGTAACTGATCAAATGTCCATGGC
TGGCCAGCATCAAGCTGAAGTACATGGTAATGATGTTGCATCCACTTCAG
AGCAAAAGCCAGATATTGTCAAATCCGAATCAGATGTCAAGTATCCCTTC
CTCAAACAGGCCAGTCAAATGTTGGGCAACGTTGCTGCTGCTCCTGCATT
TGCCTCGGAATTCCCTACAAAGGATGCAGCTCTTCGACTCAATTCATTGG
CTCATCCGTCCAGTTCAGTTCATGTTACTGCCGGTATGATCAGAATCAGA
AATATCACTTTAAGTGGAAGTGGATTGGACTGGTCGGTTGGCAAGAATGG
GGATATGAATATTGTCTTTTCTTTTGACCTGTCACAAAATGTCATCAGTC
CTAGTCCTACCAGTTTTGAACCGGCGGGTAACATTTTCTCTGGTAAGACA
GGGTCGGTGGTGTTCCGGAGCTTGTGGTTGTTGTTGTTCCTTTGGATCAT
AATTCTTTCAGTGGGTTTTAAGATTGGTGCCTGTGTCTCTGCCAAGTAAA
CAGGATTACTGCATCCAAAACTTTATTTGCTGGTTAAATTGATAGGGTTA
GTTGATATTGATATTTCTTTATAGATTATTGACTTGGACACCACCTCGTT
GCAGATATGTTGTTATATGTAACTTTTTGACTGTCAAATTAAGTTGGCGT
CTTATATACTTTATACCATTGTA
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