CX289868

Overview
NameCX289868
Unique NameCX289868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289868 vs. ExPASy Swiss-Prot
Match: Y2766_ARATH (Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis thaliana GN=At2g37660 PE=1 SV=2)

HSP 1 Score: 318.546 bits (815), Expect = 2.322e-86
Identity = 152/167 (91.02%), Postives = 164/167 (98.20%), Query Frame = 3
Query:    3 FDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLVGKDDELLQTETRTIARADVAEVCIQALQFEEAKFKAFDLASKPEGTGTPTKDFKALFSQITTRF 503
            FDP+KGGRPEF+F++GAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTN+NHPLNS+GN NILVWKRKAEQYLADSGIPYTIIRAGGLQDK+GGIRELLVGKDDELL+TETRTIARADVAEVC+QALQ EEAKFKA DLASKPEGTGTPTKDFKALF+Q+TT+F
Sbjct:  159 FDPSKGGRPEFFFDDGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNINHPLNSIGNANILVWKRKAEQYLADSGIPYTIIRAGGLQDKDGGIRELLVGKDDELLETETRTIARADVAEVCVQALQLEEAKFKALDLASKPEGTGTPTKDFKALFTQVTTKF 325          
BLAST of CX289868 vs. ExPASy Swiss-Prot
Match: Y5224_ARATH (Uncharacterized protein At5g02240 OS=Arabidopsis thaliana GN=At5g02240 PE=1 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 5.539e-80
Identity = 144/167 (86.23%), Postives = 153/167 (91.62%), Query Frame = 3
Query:    3 FDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLVGKDDELLQTETRTIARADVAEVCIQALQFEEAKFKAFDLASKPEGTGTPTKDFKALFSQITTRF 503
            FDP KGGRPEF FE+G YPEQVDWIGQKNQIDAAK AGVK IV+VGSMGGTN +HPLN LGNGNILVWKRKAEQYLADSG PYTIIRAGGL DKEGG+RELLVGKDDELLQT+T+T+ RADVAEVCIQAL FEEAK KAFDL SKPEGT TPTKDFKALFSQ+T+RF
Sbjct:   87 FDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTSRF 253          
BLAST of CX289868 vs. ExPASy Swiss-Prot
Match: Y2446_ARATH (Uncharacterized protein At2g34460, chloroplastic OS=Arabidopsis thaliana GN=At2g34460 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12
Identity = 57/167 (34.13%), Postives = 90/167 (53.89%), Query Frame = 3
Query:   12 AKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSM--GGTNLNHPLNSLGN-----GNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLVGKDDELLQTETRTIARADVAEVCIQALQFEEAKFKAFDLASKPEGTGTPTKDFKALFSQI 491
            A G RP F   +   P +VD  G  N +DA +  GV++ VLV S+   G  +   LN         G  LV K +AE+Y+  SGI YTI+R GGL++ +     +++  +D L +    +I+R  VAEV ++AL  EE+ FK  ++ ++ E    P + +K LF+ +
Sbjct:  121 ATGFRPGF---DIFTPWKVDNFGTVNLVDACRKQGVEKFVLVSSILVNGAAMGQILNPAYLFLNLFGLTLVAKLQAEKYIKKSGINYTIVRPGGLKN-DPPTGNVVMEPEDTLYE---GSISRDLVAEVAVEALLQEESSFKVVEIVARAE---APKRSYKDLFASV 277          
The following BLAST results are available for this feature:
BLAST of CX289868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y2766_ARATH2.322e-8691.02Uncharacterized protein At2g37660, chloroplastic O... [more]
Y5224_ARATH5.539e-8086.23Uncharacterized protein At5g02240 OS=Arabidopsis t... [more]
Y2446_ARATH4.943e-1234.13Uncharacterized protein At2g34460, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionC02018A03SK IF1 Citrus clementina cDNA clone C02018A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289868 ID=CX289868; Name=CX289868; organism=Citrus clementina; type=EST; length=745bp
ATTTTGATCCTGCCAAAGGTGGAAGGCCTGAGTTCTACTTTGAAGAGGGT
GCATATCCTGAACAGGTTGATTGGATTGGTCAGAAAAATCAAATTGATGC
TGCTAAGGCTGCTGGAGTGAAGCAAATTGTGTTGGTTGGATCGATGGGAG
GAACAAATCTTAATCATCCCTTGAACAGTTTGGGCAATGGCAATATATTG
GTTTGGAAAAGAAAGGCTGAGCAGTATTTGGCTGACTCTGGTATTCCATA
CACAATTATAAGGGCCGGAGGCCTTCAGGATAAAGAAGGTGGTATCCGAG
AATTGCTTGTCGGTAAGGATGATGAACTTCTTCAGACAGAAACAAGGACA
ATTGCCAGGGCCGATGTTGCCGAAGTCTGCATTCAGGCACTACAGTTTGA
GGAGGCCAAATTTAAGGCATTTGATCTGGCCTCAAAGCCTGAGGGAACTG
GCACACCCACAAAGGATTTTAAAGCTCTCTTTTCTCAAATTACTACTCGT
TTCTGAGTCTCAGTCGCCATTCTCCTCCTGAGTTTTTATGTTAGAAAACT
GTAATGCCTTGTATTAAAAAGGGGAATGAATAAATGAATGCCGAAGATTT
CTAAAAGCTGGTGTAAAACAATTTTATGCGAAAGATATTCTCCGCACTTG
CATTGGATAGTTGTCTATTGGTATTGGAACTTTTACATGGATGAATAGAG
TGGATTCGGTGCTTTTGATTTTCAAGCTTTCTCTAGGTAAGATCA
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