CX289876

Overview
NameCX289876
Unique NameCX289876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289876 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.429e-67
Identity = 123/159 (77.36%), Postives = 131/159 (82.39%), Query Frame = 2
Query:    2 LLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRSHVPIPYEE 478
            LL GGHI+ FR+ LYWIDQ              TGG+ TPVHTLASGV Y QGIIWEIILTFSLLFTVYATIVDPKKGS+DG GPLLTGFVVGANILAGG FSGASMNPARSFGPALVSG+WTDHWVYWVGPLIGGGLAGFIYE+  I R HVP+  +E
Sbjct:   86 LLLGGHISVFRAFLYWIDQLLASSAACFLLSYLTGGMGTPVHTLASGVSYTQGIIWEIILTFSLLFTVYATIVDPKKGSLDGFGPLLTGFVVGANILAGGAFSGASMNPARSFGPALVSGNWTDHWVYWVGPLIGGGLAGFIYENVLIDRPHVPVADDE 244          
BLAST of CX289876 vs. ExPASy Swiss-Prot
Match: TIP41_ORYSJ (Probable aquaporin TIP4-1 OS=Oryza sativa subsp. japonica GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.344e-49
Identity = 97/156 (62.18%), Postives = 114/156 (73.08%), Query Frame = 2
Query:    2 LLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIV-RSHVPI 466
            LL  GHIT FRS LY   Q              TGG++TPVHTL SG+G  QG++ EIILTFSLLF VYATI+DP+  S+ G GPLLTG +VGAN +AGG FSGASMNPARSFGPAL +G WT HW+YW+GPLIGG LAG +YE  F+V R+H P+
Sbjct:   92 LLARGHITAFRSALYVAAQLLASSLACILLRYLTGGMATPVHTLGSGIGPMQGLVMEIILTFSLLFVVYATILDPRS-SVPGFGPLLTGLIVGANTIAGGNFSGASMNPARSFGPALATGVWTHHWIYWLGPLIGGPLAGLVYESLFLVKRTHEPL 246          
BLAST of CX289876 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.065e-46
Identity = 85/153 (55.56%), Postives = 107/153 (69.93%), Query Frame = 2
Query:   11 GGHITFFRSILYWIDQXXXXXXXXXXXXXXTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRSHVPIP 469
            GG+IT  R ILYWI Q              TGGL+ P   L++GVG     ++EI++TF L++TVYAT +DPK GS+  + P+  GF+VGANILAGG FSGASMNPA +FGPA+VS  WT+HWVYW GPL+GGG+AG IYE FFI  +H  +P
Sbjct:   95 GGNITLLRGILYWIAQLLGSVVACLILKFATGGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVYTVYATAIDPKNGSLGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHWVYWAGPLVGGGIAGLIYEVFFINTTHEQLP 247          
BLAST of CX289876 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.391e-46
Identity = 87/156 (55.77%), Postives = 110/156 (70.51%), Query Frame = 2
Query:    2 LLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRS-HVPI 466
            L  GG IT    + YWI Q              TGGL+ P H++A+G+G  +G++ EII+TF+L++TVYAT  DPKKGS+  + PL  G +VGANILA GPFSG SMNPARSFGPA+ +GD++ HWVYWVGPLIGGGLAG IY + F+  S HVP+
Sbjct:   90 LAVGGQITVITGVFYWIAQLLGSTAACFLLKYVTGGLAVPTHSVAAGLGSIEGVVMEIIITFALVYTVYATAADPKKGSLGTIAPLAIGLIVGANILAAGPFSGGSMNPARSFGPAVAAGDFSGHWVYWVGPLIGGGLAGLIYGNVFMGSSEHVPL 245          
BLAST of CX289876 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 1.816e-46
Identity = 87/159 (54.72%), Postives = 109/159 (68.55%), Query Frame = 2
Query:    2 LLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRSHVPIPYEE 478
            L  GG+IT      YWI Q              T GL+ P H +A+G+  FQG++ EII+TF+L++TVYAT  DPKKGS+  + P+  GF+VGANILA GPFSG SMNPARSFGPA+V+GD++ +W+YW GPLIGGGLAGFIY   FI   H P+P  E
Sbjct:   90 LAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNGLAVPTHGVAAGLNGFQGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGDFSQNWIYWAGPLIGGGLAGFIYGDVFI-GCHTPLPTSE 247          
BLAST of CX289876 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 6.902e-46
Identity = 86/159 (54.09%), Postives = 108/159 (67.92%), Query Frame = 2
Query:    2 LLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRSHVPIPYEE 478
            L  GG+IT    + YWI Q              T GLS P H +A+G+   QG++ EII+TF+L++TVYAT  DPKKGS+  + P+  GF+VGANILA GPFSG SMNPARSFGPA+ SGD++ +W+YW GPLIGG LAGFIY   FI  +H P+P  E
Sbjct:   90 LAVGGNITILTGLFYWIAQCLGSTVACLLLKFVTNGLSVPTHGVAAGMDAIQGVVMEIIITFALVYTVYATAADPKKGSLGVIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGDFSQNWIYWAGPLIGGALAGFIYGDVFIT-AHAPLPTSE 247          
BLAST of CX289876 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.015e-46
Identity = 86/159 (54.09%), Postives = 108/159 (67.92%), Query Frame = 2
Query:    2 LLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRSHVPIPYEE 478
            L  GG+IT      YWI Q              T GL+ P H +A+G+   QG++ EII+TF+L++TVYAT  DPKKGS+  + P+  GF+VGANILA GPFSG SMNPARSFGPA+V+GD++ +W+YW GPLIGGGLAGFIY   FI   H P+P  E
Sbjct:   90 LAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNGLAVPTHGVAAGLNGLQGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGDFSQNWIYWAGPLIGGGLAGFIYGDVFI-GCHTPLPTSE 247          
BLAST of CX289876 vs. ExPASy Swiss-Prot
Match: TIP41_MAIZE (Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.474e-45
Identity = 86/156 (55.13%), Postives = 109/156 (69.87%), Query Frame = 2
Query:    2 LLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIV-RSHVPI 466
            L+  GHIT  R++LY   Q              +GG+ TPVH L  G+   QG++ E+ILTFSLLF  YA I+DP+   +  +GPLLTG +VGAN LAGG F+GASMNPARSFGPAL +GDWT+HWVYW+GPL+GG LAGF+YE  F+V + H P+
Sbjct:   96 LMVRGHITKLRAVLYVAAQLLASSAACVLLRFLSGGMVTPVHALGRGISPMQGLVMEVILTFSLLFVTYAMILDPRS-QVRAIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPALATGDWTNHWVYWIGPLLGGPLAGFVYESLFLVQKMHEPL 250          
BLAST of CX289876 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 9.967e-45
Identity = 84/159 (52.83%), Postives = 107/159 (67.30%), Query Frame = 2
Query:    2 LLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRSHVPIPYEE 478
            L  GG IT    + YWI Q              TG ++TP H L SGVG F+G++ EII+TF L++TVYAT  DPKKGS+  + P+  GF+VGANIL  GPFSG SMNPARSFGPA+ SGD+T+ W+YWVGPL+GGGLAG +Y + ++   H P+   E
Sbjct:   91 LALGGQITILTGVFYWIAQLLGAIVGAVLVQFCTG-VATPTHGL-SGVGAFEGVVMEIIVTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILVAGPFSGGSMNPARSFGPAVASGDYTNIWIYWVGPLVGGGLAGLVYRYVYMCGDHAPVASSE 247          
BLAST of CX289876 vs. ExPASy Swiss-Prot
Match: TIP44_MAIZE (Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.302e-44
Identity = 90/160 (56.25%), Postives = 110/160 (68.75%), Query Frame = 2
Query:   14 GHITFFRSILYWIDQXXXXXXXXXXXXXXTGGLS-TPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVR-SHVPIPYEEARF 487
            G IT FRS LY   Q                  S  PVH L +GVG  +G++ E +LTFSLLF VYAT+VDP++ ++ G+GPLL G VVGAN+LAGGPFSGASMNPARSFGPALV+G W DHWVYWVGPLIGG LAG +Y+  F+ +  H P+P ++  F
Sbjct:   94 GRITLFRSALYVAAQLLGSTLACLLLAFLAVADSGVPVHALGAGVGALRGVLMEAVLTFSLLFAVYATVVDPRR-AVGGMGPLLVGLVVGANVLAGGPFSGASMNPARSFGPALVAGVWADHWVYWVGPLIGGPLAGLVYDGLFMAQGGHEPLPRDDTDF 252          
The following BLAST results are available for this feature:
BLAST of CX289876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
TIP41_ARATH1.429e-6777.36Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
TIP41_ORYSJ1.344e-4962.18Probable aquaporin TIP4-1 OS=Oryza sativa subsp. j... [more]
TIP11_ARATH1.065e-4655.56Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIP21_ARATH1.391e-4655.77Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
TIP2_TOBAC1.816e-4654.72Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP_ANTMA6.902e-4654.09Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
TIP1_TOBAC9.015e-4654.09Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
TIP41_MAIZE4.474e-4555.13Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1[more]
TIP22_ORYSJ9.967e-4552.83Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
TIP44_MAIZE1.302e-4456.25Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC02018A11SK IF1 Citrus clementina cDNA clone C02018A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289876 ID=CX289876; Name=CX289876; organism=Citrus clementina; type=EST; length=644bp
CCTCCTTTTCGGTGGCCACATCACCTTCTTCCGATCCATCCTTTATTGGA
TTGATCAATTGTTAGCTTCTTCAGCAGCTTGTTTTCTCCTCAGTTATCTC
ACTGGTGGATTGAGTACACCAGTCCACACTCTGGCTAGCGGCGTAGGCTA
TTTTCAAGGGATCATATGGGAGATTATTCTGACATTCTCCTTGCTATTCA
CCGTCTATGCCACTATCGTGGACCCCAAGAAGGGATCAATTGATGGGCTT
GGCCCATTACTTACTGGGTTTGTGGTGGGGGCAAACATCTTGGCTGGTGG
ACCTTTCTCCGGCGCCTCAATGAACCCGGCACGATCCTTCGGACCGGCTT
TGGTAAGCGGAGACTGGACCGATCATTGGGTTTACTGGGTTGGGCCTCTC
ATTGGAGGTGGGCTTGCTGGGTTCATTTATGAACATTTCTTCATCGTCAG
GTCTCATGTTCCCATTCCGTACGAGGAAGCCAGATTTTAATTAACTAACC
GAATCCAATGGCGTGATGGACCACGGTGTTATCTGTGGGTCACTATTTTG
TTAAATTAAGTGAATGATGTACCACGTGTGTCTTATGTGTATGAATACTG
TAATATTACAAGCTGCTGTTTCTCTCTTGATGTACTTTTAGTCT
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