CX289883

Overview
NameCX289883
Unique NameCX289883
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289883 vs. ExPASy Swiss-Prot
Match: EMF2_ARATH (Polycomb group protein EMBRYONIC FLOWER 2 OS=Arabidopsis thaliana GN=EMF2 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.605e-29
Identity = 57/97 (58.76%), Postives = 76/97 (78.35%), Query Frame = 1
Query:   64 NMLTKTEVTEDFSCPFCLMQCACFKGLRYHLCSSHDLFNYEFWVTDDYQAVNISVKIDTLTSEIVAGGVDPRLQTFFFCAKP-RSRKRKNLAEHEKQ 351
            N L KTEVTEDFSCPFCL++CA FKGLRYHL S+HDL N+EFWVT+++QAVN+S+K +T+ S++    VDP+ QTFFF +K  R R++K+     +Q
Sbjct:  313 NKLQKTEVTEDFSCPFCLVKCASFKGLRYHLPSTHDLLNFEFWVTEEFQAVNVSLKTETMISKVNEDDVDPKQQTFFFSSKKFRRRRQKSQVRSSRQ 409          

HSP 2 Score: 25.0238 bits (53), Expect = 1.605e-29
Identity = 12/20 (60.00%), Postives = 12/20 (60.00%), Query Frame = 3
Query:   18 RLRPGIVVFNYRDYYQHANK 77
            RLR G VVFNYR Y     K
Sbjct:  298 RLRTGNVVFNYRYYNNKLQK 317          
BLAST of CX289883 vs. ExPASy Swiss-Prot
Match: VRN2_ARATH (Polycomb group protein VERNALIZATION 2 OS=Arabidopsis thaliana GN=VRN2 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 2.789e-25
Identity = 57/126 (45.24%), Postives = 80/126 (63.49%), Query Frame = 1
Query:   64 NMLTKTEVTEDFSCPFCLMQCACFKGLRYHLCSSHDLFNYEFWVTDDYQAVNISVKIDTLTSEIVAGGVDPRLQTFFFCAKPRSRKRKNLAEHEKQVNIQFLELDSPGLPTDDANGEFAAKDDGER 441
            N L +TEV ED SCPFC M C  FKGL++HL SSHDLF +EF + ++YQ VN+SVK+++   E   G  D + + F  C+KPR R+++    + +++ + FL LDSP L     NG  A  +DG R
Sbjct:   77 NTLQRTEVREDCSCPFCSMLCGSFKGLQFHLNSSHDLFEFEFKLLEEYQTVNVSVKLNSFIFE-EEGSDDDKFEPFSLCSKPRKRRQRGGRNNTRRLKVCFLPLDSPSLANGTENG-IALLNDGNR 200          

HSP 2 Score: 21.557 bits (44), Expect = 2.789e-25
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 3
Query:   12 RRRLRPGIVVFNYRD 56
            R+    G+VVFNY+D
Sbjct:   60 RKSRSTGMVVFNYKD 74          
BLAST of CX289883 vs. ExPASy Swiss-Prot
Match: FIS2_ARATH (Polycomb group protein FERTILIZATION-INDEPENDENT SEED 2 OS=Arabidopsis thaliana GN=FIS2 PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 9.084e-18
Identity = 52/141 (36.88%), Postives = 79/141 (56.03%), Query Frame = 1
Query:   67 MLTKTEVTEDFSCPFCLMQCACFKGLRYHLCSSHDLFNYEFW--VTDDYQAVNISVKIDTLTSEIVAGGV-DPRLQTFFFCAKPRS-RKRKNLAEHEKQVNIQFLELDSPGLPTDDANGEFAAKDDGERDSKLSPSGRKIA 477
            M  K EV E+FSCPFCL+ C   +GL+ HL SSHD F +EF+    D    V++SVK DT+   ++   V +P+L    FC+K R+ R++++ + + K++N+  +ELD   LP    N      DD       + S  KI+
Sbjct:  124 MTLKAEVVENFSCPFCLIPCGGHEGLQLHLKSSHDAFKFEFYRAEKDHGPEVDVSVKSDTIKFGVLKDDVGNPQLSPLTFCSKNRNQRRQRDDSNNVKKLNVLLMELDLDDLPRGTENDSTHVNDDNVSSPPRAHSSEKIS 264          
The following BLAST results are available for this feature:
BLAST of CX289883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
EMF2_ARATH1.605e-2958.76Polycomb group protein EMBRYONIC FLOWER 2 OS=Arabi... [more]
VRN2_ARATH2.789e-2545.24Polycomb group protein VERNALIZATION 2 OS=Arabidop... [more]
FIS2_ARATH9.084e-1836.88Polycomb group protein FERTILIZATION-INDEPENDENT S... [more]
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Properties
Property NameValue
Genbank descriptionC02018B06SK IF1 Citrus clementina cDNA clone C02018B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289883 ID=CX289883; Name=CX289883; organism=Citrus clementina; type=EST; length=692bp
AATTCGGCACGAGGAGGAGGTTGAGGCCGGGAATCGTAGTTTTCAACTAC
AGGGACTACTACCAACATGCTAACAAAGACTGAAGTAACTGAGGACTTCT
CTTGTCCGTTTTGCTTGATGCAATGTGCGTGCTTCAAGGGTCTGCGGTAT
CATTTGTGCTCATCACATGATTTATTCAACTACGAGTTCTGGGTTACTGA
CGATTATCAGGCAGTGAACATCTCTGTGAAAATTGATACACTGACATCTG
AGATTGTAGCAGGTGGAGTAGACCCACGGCTACAAACATTTTTCTTCTGT
GCAAAGCCACGAAGTCGTAAGCGAAAGAACCTTGCAGAGCATGAAAAACA
AGTTAACATACAATTCTTGGAATTGGACTCGCCGGGATTACCCACTGATG
ATGCAAATGGAGAGTTTGCTGCAAAGGATGATGGTGAGAGGGATTCCAAG
TTATCTCCTAGTGGAAGAAAAATTGCCAAATGGAAGGGATGGAGGAATAA
CCTCTGGTTTTAATGGAGCAGATTGCATTGAAGGTGTTGCATCCAGTTTC
AATGGTCCTGATGTACCAATTGCCATGGCTCAATCTTCTATGGACCCTGA
GTGTGTTAAATCATTATCTGGAACTGATGCTGTAGCCCCTGCTATGCTGC
ATGTTGTAAAATCTAGGAAGTTAAGCACAGAACGGTCAGACC
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