CX289888

Overview
NameCX289888
Unique NameCX289888
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289888 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.731e-46
Identity = 100/145 (68.97%), Postives = 107/145 (73.79%), Query Frame = 1
Query:    1 NSARGTFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXXQGLMV 435
            ++   TFAAIEEGIVPGGGA LVHLS  +PAIK+KLEDADERLGADIVQKALVAPA+LIA NA             SEW  GYNAMTD YEN+L+AGVIDPAKVTRCALQNAASVAGMVLTTQAI               QGLMV
Sbjct:  402 DAKNATFAAIEEGIVPGGGATLVHLSTVIPAIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIMFSEWEIGYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPTAAPPQGLMV 546          
BLAST of CX289888 vs. ExPASy Swiss-Prot
Match: RUBA_PEA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.499e-45
Identity = 96/145 (66.21%), Postives = 106/145 (73.10%), Query Frame = 1
Query:    1 NSARGTFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXXQGLMV 435
            ++   TFAAIEEGIVPGGG ALVHLS +VPAIK+KLEDADERLGADIVQKALVAPA+LIA NA              EW  GYNAMTD YEN++++GVIDPAKVTRCALQNAASVAGMVLTTQAI               QGL +
Sbjct:  443 DAKNATFAAIEEGIVPGGGTALVHLSGYVPAIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIKNGEWEVGYNAMTDTYENLVESGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAAVAAAPQGLTI 587          
BLAST of CX289888 vs. ExPASy Swiss-Prot
Match: RUBA_ARATH (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g28000 PE=1 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 4.713e-44
Identity = 94/145 (64.83%), Postives = 105/145 (72.41%), Query Frame = 1
Query:    1 NSARGTFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXXQGLMV 435
            ++   TFAAIEEGIVPGGGAALVHLS  +PAIK+  EDADERLGADIVQKAL++PA+LIA NA             S+W  GYNAMTD YEN+ +AGVIDPAKVTRCALQNAASVAGMVLTTQAI               +GLMV
Sbjct:  442 DAKNATFAAIEEGIVPGGGAALVHLSTVIPAIKETFEDADERLGADIVQKALLSPAALIAQNAGVEGEVVVEKIMFSDWENGYNAMTDTYENLFEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPAAAAPEGLMV 586          
BLAST of CX289888 vs. ExPASy Swiss-Prot
Match: RUBA_WHEAT (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.156e-44
Identity = 90/125 (72.00%), Postives = 102/125 (81.60%), Query Frame = 1
Query:    1 NSARGTFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 375
            ++   TFAAIEEGIVPGGGAA VHLS +VPAIK+ +ED DERLGADI+QKAL APASLIA+NA             SEW  GYNAMTDKYEN++++GVIDPAKVTRCALQNAASV+GMVLTTQAI
Sbjct:  398 DAKNATFAAIEEGIVPGGGAAYVHLSTYVPAIKETIEDHDERLGADIIQKALQAPASLIANNAGVEGEVVIEKIKESEWEMGYNAMTDKYENLIESGVIDPAKVTRCALQNAASVSGMVLTTQAI 522          
BLAST of CX289888 vs. ExPASy Swiss-Prot
Match: RUB2_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.828e-42
Identity = 95/145 (65.52%), Postives = 102/145 (70.34%), Query Frame = 1
Query:    1 NSARGTFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXXQGLMV 435
            ++   TFAAIEEGIVPGGGA LVHLS  +PAIK+  EDAD RLGADIVQKALVA  SLIA NA             SEW  GYNAMTD YEN+L+AGVIDPAKVTRCALQNAASVAGMVLTTQAI               +GLMV
Sbjct:  440 DAKNATFAAIEEGIVPGGGATLVHLSTVIPAIKETFEDADVRLGADIVQKALVAQ-SLIAQNAGIEGEVVVEKIMFSEWELGYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPAAAAPEGLMV 583          
BLAST of CX289888 vs. ExPASy Swiss-Prot
Match: RUBA_RICCO (RuBisCO large subunit-binding protein subunit alpha (Fragment) OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.624e-36
Identity = 79/111 (71.17%), Postives = 87/111 (78.38%), Query Frame = 1
Query:    1 NSARGTFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQN 333
            ++   TFAAIEEGIVPGGGAALVHLS  VPAI  + +DADERLGADI+QKALVAPASLIA NA            A EW  GYNAMTDKYEN+++AGVIDPAKVTRCALQN
Sbjct:  385 DAKNATFAAIEEGIVPGGGAALVHLSTVVPAINGEDKDADERLGADILQKALVAPASLIAQNAGIEGEVVVEKVKAREWEIGYNAMTDKYENLVEAGVIDPAKVTRCALQN 495          
BLAST of CX289888 vs. ExPASy Swiss-Prot
Match: RUBA_CHLRE (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.889e-33
Identity = 73/125 (58.40%), Postives = 89/125 (71.20%), Query Frame = 1
Query:    1 NSARGTFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 375
            ++   TFAA+EEGIVPGGGAAL+HLS+ VPA K+ L DA+E+LGADIV K+L AP  LIA NA               +  GYNAM DK EN+L AGVIDPAKVTR  L N+ S+AG++LTTQA+
Sbjct:  431 DAKNATFAAVEEGIVPGGGAALLHLSELVPAFKETLTDAEEKLGADIVMKSLRAPCRLIADNAGVEGEVIVQRLLGKPFEVGYNAMIDKVENLLDAGVIDPAKVTRNGLLNSVSIAGIMLTTQAV 555          
BLAST of CX289888 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.184e-28
Identity = 59/125 (47.20%), Postives = 88/125 (70.40%), Query Frame = 1
Query:    1 NSARGTFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 375
            ++   T AA+EEGIVPGGG  L+HLS  V  +K  L + +E++GADIV++AL AP + IA+N+            +++++ GYN +T +YE+++ AG++DPA V R ALQNA S+AGMVLTT+A+
Sbjct:  396 DALNATKAAVEEGIVPGGGTTLIHLSTKVEELKGSLNNEEEKIGADIVRRALEAPLNQIANNSGVEGSVIVEKVRSTDFSVGYNVITGEYEDLIAAGILDPAMVVRSALQNAGSIAGMVLTTEAV 520          
BLAST of CX289888 vs. ExPASy Swiss-Prot
Match: CH602_SYNJB (60 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.838e-27
Identity = 65/125 (52.00%), Postives = 84/125 (67.20%), Query Frame = 1
Query:    1 NSARGTFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 375
            ++   T AA+EEGIVPGGGA L+HLS  +PA K KL +A+E++GA+IV +AL AP   IAHNA              E   G++A+T  Y +M   G++DPAKV R ALQNAAS+AGM LTT+AI
Sbjct:  397 DALNATRAAVEEGIVPGGGATLLHLSKGIPAFKAKL-NAEEQVGAEIVYRALQAPLFQIAHNAGLEGSVVVEKVLEKEMPFGFDALTGTYVDMFAQGIVDPAKVVRSALQNAASIAGMYLTTEAI 520          
BLAST of CX289888 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.838e-27
Identity = 62/125 (49.60%), Postives = 87/125 (69.60%), Query Frame = 1
Query:    1 NSARGTFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 375
            ++   T AA+ EGIVPGGG  L+HL+  + ++K +L+D +E++GAD+V  AL AP + IA NA             ++++ GYNAMTD YE+M+ AGV+DPAKV R  LQNA S+AGMVLTT+A+
Sbjct:  396 DALNATKAAVAEGIVPGGGTTLIHLTKTIESVKAQLKD-EEKVGADLVGIALEAPLTQIADNAGKEGAVVVEKVRDADFSYGYNAMTDTYEDMIAAGVVDPAKVVRSGLQNAGSIAGMVLTTEAL 519          
The following BLAST results are available for this feature:
BLAST of CX289888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUB1_BRANA1.731e-4668.97RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_PEA2.499e-4566.21RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_ARATH4.713e-4464.83RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_WHEAT6.156e-4472.00RuBisCO large subunit-binding protein subunit alph... [more]
RUB2_BRANA9.828e-4265.52RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_RICCO1.624e-3671.17RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_CHLRE4.889e-3358.40RuBisCO large subunit-binding protein subunit alph... [more]
CH601_TRIEI6.184e-2847.2060 kDa chaperonin 1 OS=Trichodesmium erythraeum (s... [more]
CH602_SYNJB6.838e-2752.0060 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 ... [more]
CH601_ACAM16.838e-2749.6060 kDa chaperonin 1 OS=Acaryochloris marina (strai... [more]

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Properties
Property NameValue
Genbank descriptionC02018B11SK IF1 Citrus clementina cDNA clone C02018B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289888 ID=CX289888; Name=CX289888; organism=Citrus clementina; type=EST; length=726bp
AATTCGGCACGAGGAACTTTTGCAGCCATAGAGGAAGGTATTGTTCCTGG
TGGTGGTGCTGCTCTGGTTCATCTGTCTGATCATGTTCCTGCTATCAAGG
ACAAGCTTGAAGATGCAGATGAGCGATTAGGTGCTGACATTGTGCAGAAG
GCACTGGTAGCACCTGCATCACTGATAGCTCACAATGCTGGAGTTGAAGG
TGAGGTTGTTGTGGAGAAGGTGAAAGCTAGTGAATGGACGACTGGTTACA
ATGCAATGACAGACAAGTATGAGAACATGCTTCAGGCTGGAGTTATTGAT
CCTGCAAAGGTGACAAGATGTGCATTGCAGAATGCGGCTTCAGTTGCAGG
AATGGTCCTGACCACTCAGGCTATTGTCGTGGAGAAGCCAAAGCCCAAAA
CTCCGGTAGCCGCTCCGCCACAAGGTCTTATGGTGTAATCTCTAGGACTC
TCCAGATTTAGTTAGGAGGTTTATAGATGAAAGAGTGGTTTTATTGCGGT
GAACTGAAAAGACAAGTTTTACTTAATTGATATAAAATCGTGTCTTTTTT
GTAAAAAAAAAAAAAAAAAACTCGAGTTTTTTTTTTTTTTTTTTACTAGG
AAGAGCTTCACAGCATCATTTTTATTCCAGAAAACATTATCTCTGTGGAT
CTCAAGAAGATAATCATATACATTACACATCGATAGGAGAGCCAAGAGTA
TATCTTATGAAATATCAAGAAACTCC
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