CX289890

Overview
NameCX289890
Unique NameCX289890
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289890 vs. ExPASy Swiss-Prot
Match: DCDA1_ARATH (Diaminopimelate decarboxylase 1, chloroplastic OS=Arabidopsis thaliana GN=LYSA1 PE=1 SV=1)

HSP 1 Score: 409.453 bits (1051), Expect = 9.137e-114
Identity = 202/221 (91.40%), Postives = 209/221 (94.57%), Query Frame = 3
Query:   24 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK 686
            GCGAVLVSGNELRLALRAGFDPTKCIFNGNGK LEDLVLAAQEGVFVNVDSEFDL NIV ASRI+GK+VNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD VKAHP ELKLVGAHCHLGSTITKVDIFRDAAVLM+ YID+IR QGFEV YLNIGGGLGIDYYH GAVLP P +LI+TVRELVLSR+LNLIIEPGRSLIANTCC VNHVTGVK
Sbjct:  140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKSLEDLVLAAQEGVFVNVDSEFDLNNIVEASRISGKQVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDQVKAHPKELKLVGAHCHLGSTITKVDIFRDAAVLMIEYIDEIRRQGFEVSYLNIGGGLGIDYYHAGAVLPTPMDLINTVRELVLSRDLNLIIEPGRSLIANTCCFVNHVTGVK 360          
BLAST of CX289890 vs. ExPASy Swiss-Prot
Match: DCDA2_ARATH (Diaminopimelate decarboxylase 2, chloroplastic OS=Arabidopsis thaliana GN=LYSA2 PE=2 SV=1)

HSP 1 Score: 406.757 bits (1044), Expect = 5.922e-113
Identity = 201/221 (90.95%), Postives = 208/221 (94.12%), Query Frame = 3
Query:   24 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK 686
            GCGAVLVSGNELRLAL AGFDPTKCIFNGNGK LEDLVLAAQEGVFVNVDSEFDL NIV ASRI+GK+VNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD VKAHP ELKLVGAHCHLGSTITKVDIFRDAAVLM+ YID+IR QGFEV YLNIGGGLGIDYYH GAVLP P +LI+TVRELVLSR+LNLIIEPGRSLIANTCC VNHVTGVK
Sbjct:  145 GCGAVLVSGNELRLALLAGFDPTKCIFNGNGKSLEDLVLAAQEGVFVNVDSEFDLNNIVEASRISGKQVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDEVKAHPKELKLVGAHCHLGSTITKVDIFRDAAVLMIEYIDEIRRQGFEVSYLNIGGGLGIDYYHAGAVLPTPMDLINTVRELVLSRDLNLIIEPGRSLIANTCCFVNHVTGVK 365          
BLAST of CX289890 vs. ExPASy Swiss-Prot
Match: DCDA_ORYSJ (Probable diaminopimelate decarboxylase, chloroplastic OS=Oryza sativa subsp. japonica GN=LYSA PE=2 SV=1)

HSP 1 Score: 387.882 bits (995), Expect = 2.847e-107
Identity = 188/227 (82.82%), Postives = 209/227 (92.07%), Query Frame = 3
Query:    6 RIRHEGGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK 686
            ++  E GCGAVLVSGNELRLALRAGFDPT+CIFNGNGK LEDLVLAA+ GVFVN+DSEFDLENIV A+R+AGKKV VLLRINPDVDPQVHPYVATGNK SKFGIRNEKLQWFLD++K++ N++ LVG HCHLGSTITKVDIFRDAA LMVNY+D+IRAQGFE++YLNIGGGLGIDY+HT AVLP P +LI+TVRELVLSR+L LIIEPGRSLIANTCC VN VTGVK
Sbjct:  139 QLLRELGCGAVLVSGNELRLALRAGFDPTRCIFNGNGKTLEDLVLAAESGVFVNIDSEFDLENIVTAARVAGKKVPVLLRINPDVDPQVHPYVATGNKTSKFGIRNEKLQWFLDSIKSYSNDITLVGVHCHLGSTITKVDIFRDAAGLMVNYVDEIRAQGFELEYLNIGGGLGIDYHHTDAVLPTPMDLINTVRELVLSRDLTLIIEPGRSLIANTCCFVNRVTGVK 365          
BLAST of CX289890 vs. ExPASy Swiss-Prot
Match: DCDA_AQUAE (Diaminopimelate decarboxylase OS=Aquifex aeolicus GN=lysA PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.106e-37
Identity = 84/224 (37.50%), Postives = 134/224 (59.82%), Query Frame = 3
Query:   18 EGGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK 686
            E G GA +VSG EL LA +AG  P + ++ G GK  ++L  A    + + NV+S  +L+ +   +   GKK  + +R+NPDVDP+ HPY+ATG + SKFG+   + Q   +      N L++VG HCH+GS I  +  +R+A   +V+  + +  +GF++ YL+IGGGLGI Y       P P++L D +++L+ +    +I+EPGRS++ N   L+  V  +K
Sbjct:   78 ELGAGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVDSEILMFNVESRQELDVLNEIAGKLGKKARIAIRVNPDVDPKTHPYIATGMQKSKFGVDIREAQKEYEYASKLEN-LEIVGIHCHIGSQILDISPYREAVEKVVSLYESLTQKGFDIKYLDIGGGLGIKYKPEDKE-PAPQDLADLLKDLLENVKAKIILEPGRSIMGNAGILITQVQFLK 299          
BLAST of CX289890 vs. ExPASy Swiss-Prot
Match: DCDA_PSEAE (Diaminopimelate decarboxylase OS=Pseudomonas aeruginosa GN=lysA PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 7.650e-36
Identity = 86/227 (37.89%), Postives = 133/227 (58.59%), Query Frame = 3
Query:   24 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKLMEQK 701
            G G  +VS  EL   L AG DP K +F+G GK  +D+  A + GV   NV+S  +LE +   +   G K  V LR+NPDVD Q HPY++TG K +KFGI  ++ +  + A  A  + L+++G  CH+GS +T+++ F DA   ++  +D++  +G  + +L++GGGLG+ Y       P   + I  +RE +  R+L L+ EPGRS++AN   L+  V  +K  E K
Sbjct:   75 GAGFDIVSRGELERVLAAGGDPAKVVFSGVGKTRDDMRRALEVGVHCFNVESGEELERLQRVAAELGVKAPVSLRVNPDVDAQTHPYISTGLKENKFGIAIDEAE-AVYARAAELDHLEVIGVDCHIGSQLTQLEPFLDALERLLGLVDRLAGKGIGIRHLDLGGGLGVRYRDEQP--PLAGDYIRAIRERLHGRDLTLVFEPGRSIVANAGVLLTRVEYLKHTEHK 298          
BLAST of CX289890 vs. ExPASy Swiss-Prot
Match: DCDA_ARCFU (Diaminopimelate decarboxylase OS=Archaeoglobus fulgidus GN=lysA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.482e-34
Identity = 90/238 (37.82%), Postives = 131/238 (55.04%), Query Frame = 3
Query:    6 RIRHEGGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKL-----VGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTV------RELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK 686
            RI    G GA + S  EL LA  AGF     +FNGN K  +++ +    GV  +VDS  +L  I   ++  GK+V +  R+NPDVDP+ HP +ATG + SKFGI +E ++      +A+   LKL     VG HCH+GS I  +  F  A   +++    I   G E+ ++++GGGLGIDY   GA  P P++L   +      R+  L+ +  L +EPGRS++ NT  L+  V  VK
Sbjct:   65 RIIASHGFGADVFSDGELYLASLAGFRKDMVLFNGNSKSRKEIEMGVTAGVKFSVDSLDELRTISKIAKEVGKEVEIAFRVNPDVDPKTHPKIATGLRESKFGIPHEMVR------EAYEMALKLDGVVPVGIHCHIGSQILDLSPFVHALNKVMDIAVDIEKLGVELSFVDMGGGLGIDYEGKGA--PTPKDLASAILPEFEGRKADLTSDPQLWLEPGRSIVGNTTVLITRVNAVK 294          
BLAST of CX289890 vs. ExPASy Swiss-Prot
Match: DCDA_NEIMA (Diaminopimelate decarboxylase OS=Neisseria meningitidis serogroup A GN=lysA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.034e-32
Identity = 87/233 (37.34%), Postives = 133/233 (57.08%), Query Frame = 3
Query:   24 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH------PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKLMEQK 701
            G G  +VSG EL   L AG D  K IF+G GK   ++  A   GV   N++S  +++ I   +   GK  +V LR+NPDVD + HPY++TG K +KFGI       + DA++A+      PN LK++G  CH+GS +T +    +A   ++  +D + A+G  +++L++GGG+GI Y      +P        V++L+ +R L LI+EPGRSL+ N   L+  V  VK  E+K
Sbjct:   67 GSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPEIDRIQKVAARLGKTASVSLRVNPDVDAKTHPYISTGLKANKFGIA------YADALEAYRHAAQQPN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDALAAEGIVLEHLDLGGGVGIVYQDED--VPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGALLTRVEFVKYGEEK 290          
BLAST of CX289890 vs. ExPASy Swiss-Prot
Match: DCDA_NEIMB (Diaminopimelate decarboxylase OS=Neisseria meningitidis serogroup B GN=lysA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.764e-32
Identity = 88/233 (37.77%), Postives = 132/233 (56.65%), Query Frame = 3
Query:   24 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH------PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKLMEQK 701
            G G  +VSG EL   L AG D  K IF+G GK   ++  A   GV   N++S  +++ I   +   GK   V LRINPDVD + HPY++TG K +KFGI       + DA++A+      PN LK++G  CH+GS +T +    +A   ++  +D + A+G  +++L++GGG+GI Y      +P        V++L+ +R L LI+EPGRSL+ N   L+  V  VK  E+K
Sbjct:   67 GSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPEIDRIQKVAARLGKTAPVSLRINPDVDAKTHPYISTGLKANKFGIA------YADALEAYHYAAQQPN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDALAAEGIVLEHLDLGGGVGIVYQDEN--VPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGSLLTRVEFVKYGEEK 290          
BLAST of CX289890 vs. ExPASy Swiss-Prot
Match: DCDA_METJA (Diaminopimelate decarboxylase OS=Methanocaldococcus jannaschii GN=lysA PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.752e-32
Identity = 80/229 (34.93%), Postives = 131/229 (57.21%), Query Frame = 3
Query:   24 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA--HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLS-----RNLNLIIEPGRSLIANTCCLVNHVTGVK 686
            GCGA +VSG EL +A  +     K +FNGN K  E++++  +  +   NVDS  +L  I   ++  G+  NV  RINP+V+P+ HP ++TG K +KFG+  E     + A+K       + +VG HCH+GS +T +  F +    +++++ +++ +G E++ +N+GGGLGI YY    + P  ++L D +   +L         NLI+EPGRSL+A    L+  V  +K
Sbjct:   88 GCGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIRAFNVDSISELILINETAKELGETANVAFRINPNVNPKTHPKISTGLKKNKFGLDVES-GIAMKAIKMALEMEYVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGIEIEDVNLGGGLGIPYYKDKQI-PTQKDLADAIINTMLKYKDKVEMPNLILEPGRSLVATAGYLLGKVHHIK 314          
BLAST of CX289890 vs. ExPASy Swiss-Prot
Match: DCDA_VIBCH (Diaminopimelate decarboxylase OS=Vibrio cholerae GN=lysA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.673e-31
Identity = 84/228 (36.84%), Postives = 128/228 (56.14%), Query Frame = 3
Query:   24 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKLMEQK 701
            G G  +VS  EL   L AG DP+K +F+G GK   ++  A Q  +   NV+SE +L+ +   +   G K  + LRINPDVD + HPY++TG +++KFGI  ++         + PN L + G  CH+GS +T +  F DA   ++  ID ++A+G  + +L++GGGLG+ Y     + P+P      + + L   R+L LI EPGR++ AN   LV  V  +K  E K
Sbjct:   76 GSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKIKCFNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAQVYRLAHSLPN-LDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVGGGLGVVY--RDELPPQPSEYAKALLDRLERHRDLELIFEPGRAIAANAGVLVTKVEFLKHTEHK 300          
The following BLAST results are available for this feature:
BLAST of CX289890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
DCDA1_ARATH9.137e-11491.40Diaminopimelate decarboxylase 1, chloroplastic OS=... [more]
DCDA2_ARATH5.922e-11390.95Diaminopimelate decarboxylase 2, chloroplastic OS=... [more]
DCDA_ORYSJ2.847e-10782.82Probable diaminopimelate decarboxylase, chloroplas... [more]
DCDA_AQUAE3.106e-3737.50Diaminopimelate decarboxylase OS=Aquifex aeolicus ... [more]
DCDA_PSEAE7.650e-3637.89Diaminopimelate decarboxylase OS=Pseudomonas aerug... [more]
DCDA_ARCFU5.482e-3437.82Diaminopimelate decarboxylase OS=Archaeoglobus ful... [more]
DCDA_NEIMA1.034e-3237.34Diaminopimelate decarboxylase OS=Neisseria meningi... [more]
DCDA_NEIMB1.764e-3237.77Diaminopimelate decarboxylase OS=Neisseria meningi... [more]
DCDA_METJA8.752e-3234.93Diaminopimelate decarboxylase OS=Methanocaldococcu... [more]
DCDA_VIBCH5.673e-3136.84Diaminopimelate decarboxylase OS=Vibrio cholerae G... [more]

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Properties
Property NameValue
Genbank descriptionC02018C01SK IF1 Citrus clementina cDNA clone C02018C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289890 ID=CX289890; Name=CX289890; organism=Citrus clementina; type=EST; length=704bp
CTGCCCGAATTCGGCACGAGGGGGGTTGTGGAGCTGTTCTTGTTAGTGGC
AATGAGCTGAGGCTTGCTCTTCGAGCTGGATTTGATCCCACCAAGTGTAT
CTTTAATGGGAATGGGAAGCTTTTGGAGGATTTGGTGCTGGCTGCACAAG
AGGGTGTGTTTGTTAATGTTGATAGTGAGTTTGACTTGGAGAATATTGTT
GTAGCTTCAAGAATTGCTGGCAAGAAGGTTAATGTGTTGCTTCGGATTAA
TCCTGATGTGGATCCTCAGGTCCATCCTTATGTTGCTACTGGGAACAAGA
ACTCTAAATTTGGCATTAGGAATGAGAAGTTGCAATGGTTTTTGGATGCC
GTGAAGGCACATCCTAATGAGTTGAAGCTTGTGGGGGCTCATTGCCATCT
TGGTTCCACCATTACCAAGGTGGACATATTCAGGGATGCTGCAGTTCTTA
TGGTCAATTACATTGACAAAATCCGCGCCCAAGGCTTTGAAGTTGATTAC
TTGAACATTGGAGGTGGTTTAGGAATAGACTATTATCACACTGGTGCTGT
CCTTCCCAAACCCAGAAATCTGATTGACACCGTTAGGGAGCTGGTTCTGT
CGAGAAATCTGAATCTCATCATTGAACCAGGGAGATCACTCATTGCAAAT
ACCTGCTGCTTGGTTAATCACGTCACTGGGGTTAAACTAATGGAACAAAA
ATTT
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