CX289892

Overview
NameCX289892
Unique NameCX289892
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289892 vs. ExPASy Swiss-Prot
Match: ODPA_PORYE (Pyruvate dehydrogenase E1 component subunit alpha OS=Porphyra yezoensis GN=pdhA PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.016e-57
Identity = 107/183 (58.47%), Postives = 132/183 (72.13%), Query Frame = 1
Query:    1 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKRIXXXXXXXXXXXXXXXPPPRSQLLENVFAD 549
            VT  FFGDGT NNGQFFECLNMA LWKLPI+FVVENN WAIGM+H R++S P+I+KK  AFG+PG  VDGMDVL VR+ AK+A++RAR+G+GPTL+E  TYRFRGHSLADPDELR   EK  + ARDPI  LKKY++++ +A+  EL  I+  +                P  S+L   +FAD
Sbjct:  163 VTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSSSIPEIHKKAEAFGLPGIEVDGMDVLAVRQAAKQAVQRARQGDGPTLIEALTYRFRGHSLADPDELRSRQEKEAWVARDPIKKLKKYILDNEIANIGELNEIQNAVKTELEQAVKFAISSPEPNMSELKRYLFAD 345          
BLAST of CX289892 vs. ExPASy Swiss-Prot
Match: ODPA_PORPU (Pyruvate dehydrogenase E1 component subunit alpha OS=Porphyra purpurea GN=pdhA PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.734e-57
Identity = 108/183 (59.02%), Postives = 133/183 (72.68%), Query Frame = 1
Query:    1 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKRIXXXXXXXXXXXXXXXPPPRSQLLENVFAD 549
            VT  FFGDGT NNGQFFECLNMA LWKLPI+FVVENN WAIGM+H R++S P+I+KK  AFG+PG  VDGMDVL VR+VA++A+ERAR+G+GPTL+E  TYRFRGHSLADPDELR   EK  + ARDPI  LKK+++++ +AS  EL  I+  +                P  S+L   +FAD
Sbjct:  161 VTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSSSIPEIHKKAEAFGLPGIEVDGMDVLAVRQVAEKAVERARQGQGPTLIEALTYRFRGHSLADPDELRSRQEKEAWVARDPIKKLKKHILDNQIASSDELNDIQSSVKIDLEQSVEFAMSSPEPNISELKRYLFAD 343          
BLAST of CX289892 vs. ExPASy Swiss-Prot
Match: ODPA_RHIME (Pyruvate dehydrogenase E1 component subunit alpha OS=Rhizobium meliloti GN=pdhA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.440e-37
Identity = 75/156 (48.08%), Postives = 107/156 (68.59%), Query Frame = 1
Query:    1 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELR--DPAEKARYAARDPITALKKYLIESSLASEAELKAIEKRI 462
            V+LA+FGDG  N GQ +E  NMAALWKLP++++VENN +A+G S  RA++     ++G +FG+PG+ VDGMDV  V+  A EA+E  R G+GP ++E  TYR+RGHS++DP + R  D  +K R +  DPI  +K  L +   A+E ELK I+K +
Sbjct:  166 VSLAYFGDGAANQGQVYESFNMAALWKLPVIYIVENNRYAMGTSVSRASAQTDFSQRGASFGIPGYQVDGMDVRAVKAAADEAVEHCRSGKGPIILEMLTYRYRGHSMSDPAKYRSKDEVQKMR-SEHDPIEQVKARLTDKGWATEDELKQIDKEV 320          
BLAST of CX289892 vs. ExPASy Swiss-Prot
Match: ODPA_RICBR (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia bellii (strain RML369-C) GN=pdhA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.865e-35
Identity = 68/154 (44.16%), Postives = 103/154 (66.88%), Query Frame = 1
Query:    1 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKRI 462
            +   F GDG  N GQ +E  NMAALW LP+V+++ENN +++G S  R+T    +YKKG +FG+ GF ++GMD  ++ +  K+A E  R    P ++E +TYR+RGHS++DP + R   E   Y  RDPIT ++K ++E++ ASEA+LK IE+ +
Sbjct:  145 ICFTFLGDGAVNQGQVYEAFNMAALWGLPVVYIIENNEYSMGTSVARSTFMRDLYKKGESFGIKGFQLNGMDFEEMYDGVKQAAEYVRENSMPLILEVKTYRYRGHSMSDPAKYRSKEEVETYKERDPITEIRKIILENNYASEADLKEIEQSV 298          
BLAST of CX289892 vs. ExPASy Swiss-Prot
Match: ODPA_RICFE (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia felis GN=pdhA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.258e-35
Identity = 66/154 (42.86%), Postives = 102/154 (66.23%), Query Frame = 1
Query:    1 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKRI 462
            +   F GDG  N GQ +E  NMAALW LP+V+++ENN +++G S  R+T    +YKKG +FG+ GF +DGMD  ++   AK+A E  R    P ++E +TYR+RGHS++DP + R   E  +Y  RDP+  ++K ++++  A+EA+LK IE+ +
Sbjct:  145 ICFTFLGDGAVNQGQVYEAFNMAALWGLPVVYIIENNEYSMGTSVARSTFMRDLYKKGESFGIKGFQLDGMDFEEMYNGAKQAAEYVRENSFPLILEVKTYRYRGHSMSDPAKYRSKEEVEQYKERDPLVIIRKTILDNKYATEADLKEIEQSV 298          
BLAST of CX289892 vs. ExPASy Swiss-Prot
Match: ODPA_RICCN (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia conorii GN=pdhA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.258e-35
Identity = 65/154 (42.21%), Postives = 103/154 (66.88%), Query Frame = 1
Query:    1 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKRI 462
            +   F GDG  N GQ +E  NMAALW LP+V+++ENN +++G S  R+T    +YKKG +FG+ GF +DGMD  ++ + +K+A E  R    P ++E +TYR+RGHS++DP + R   E  +Y  RDP+  ++K ++++   +EA+LKAIE+ +
Sbjct:  145 ICFTFLGDGAVNQGQVYEAFNMAALWGLPVVYIIENNEYSMGTSVARSTFMRDLYKKGASFGIKGFQLDGMDFEEMYDGSKQAAEYVRENSFPLILEVKTYRYRGHSMSDPAKYRSKEEVEQYKERDPLVIIRKTILDNKYVTEADLKAIEQSV 298          
BLAST of CX289892 vs. ExPASy Swiss-Prot
Match: ODPA_RICTY (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia typhi GN=pdhA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.634e-33
Identity = 62/154 (40.26%), Postives = 100/154 (64.94%), Query Frame = 1
Query:    1 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKRI 462
            +   F GDG  N GQ +E  NMA+LW LP+V+++ENN +++G S  R+T    +YKKG +FG+ GF +DGMD  ++    K+  E  R    P ++E +TYR+RGHS++DP + R   E A+Y  RD +  +++ ++++  A+E +LKAIE+ +
Sbjct:  145 ICFTFLGDGAVNQGQVYEAFNMASLWGLPVVYIIENNEYSMGTSVSRSTFMRDLYKKGESFGIRGFQLDGMDFEEMYNGTKQVAEYVRENSFPVILEVKTYRYRGHSMSDPAKYRSKEEVAKYKERDTLVRIRQIILDNKYATEEDLKAIERSV 298          
BLAST of CX289892 vs. ExPASy Swiss-Prot
Match: ODPA_RICPR (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia prowazekii GN=pdhA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.634e-33
Identity = 63/154 (40.91%), Postives = 100/154 (64.94%), Query Frame = 1
Query:    1 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKRI 462
            +   F GDG  N GQ +E  NMA+LW LPIV+++ENN +++G S  R+T    +YKKG +FG+ GF +DGMD  ++    K+  E  R    P ++E +TYR+RGHS++DP + R   E  +Y  RD +  +++ ++++  A+EA+LKAIE+ +
Sbjct:  145 ICFTFLGDGAVNQGQVYEAFNMASLWGLPIVYIIENNEYSMGTSVARSTFMCDLYKKGESFGIRGFQLDGMDFEEMYNGTKQVAEYVRENSFPVILEVKTYRYRGHSMSDPAKYRSKEEVEKYKERDTLVRIREIILDNKYATEADLKAIEQSV 298          
BLAST of CX289892 vs. ExPASy Swiss-Prot
Match: ODPA_RAT (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Rattus norvegicus GN=Pdha1 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.293e-32
Identity = 76/192 (39.58%), Postives = 106/192 (55.21%), Query Frame = 1
Query:    1 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKRIXXXXXXXXXXXXXXXPPPRSQLLENVFADPKGFGI 567
            V L  +GDG  N GQ FE  NMAALWKLP +F+ ENN + +G S  RA +    YK+G    +PG  VDGMD+L VRE  K A    R G+GP L+E +TYR+ GHS++DP      R+  ++ R +  DPI  LK  ++ S+LAS  ELK I+  +                PP  +L  ++++    F +
Sbjct:  189 VCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATKFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVR-SKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDPPFEV 377          
BLAST of CX289892 vs. ExPASy Swiss-Prot
Match: ODPA_MOUSE (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Mus musculus GN=Pdha1 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.293e-32
Identity = 76/192 (39.58%), Postives = 106/192 (55.21%), Query Frame = 1
Query:    1 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKRIXXXXXXXXXXXXXXXPPPRSQLLENVFADPKGFGI 567
            V L  +GDG  N GQ FE  NMAALWKLP +F+ ENN + +G S  RA +    YK+G    +PG  VDGMD+L VRE  K A    R G+GP L+E +TYR+ GHS++DP      R+  ++ R +  DPI  LK  ++ S+LAS  ELK I+  +                PP  +L  ++++    F +
Sbjct:  189 VCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATKFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVR-SKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDPPFEV 377          
The following BLAST results are available for this feature:
BLAST of CX289892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
ODPA_PORYE1.016e-5758.47Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_PORPU1.734e-5759.02Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RHIME4.440e-3748.08Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICBR1.865e-3544.16Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICFE9.258e-3542.86Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICCN9.258e-3542.21Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICTY6.634e-3340.26Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICPR6.634e-3340.91Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RAT3.293e-3239.58Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_MOUSE3.293e-3239.58Pyruvate dehydrogenase E1 component subunit alpha,... [more]

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Properties
Property NameValue
Genbank descriptionC02018C03SK IF1 Citrus clementina cDNA clone C02018C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289892 ID=CX289892; Name=CX289892; organism=Citrus clementina; type=EST; length=741bp
GTGACATTGGCATTTTTTGGTGATGGAACTTGTAACAATGGCCAGTTCTT
TGAGTGCTTGAACATGGCTGCATTGTGGAAGTTGCCCATTGTGTTTGTTG
TGGAGAACAACTTGTGGGCTATTGGTATGTCACATCTAAGGGCTACTTCA
GATCCTCAGATTTATAAAAAGGGACCAGCATTTGGGATGCCAGGTTTTCA
CGTTGATGGGATGGATGTTTTGAAGGTGAGGGAAGTGGCTAAAGAGGCAA
TTGAAAGAGCTAGGAGAGGTGAAGGACCAACATTGGTGGAATGTGAGACG
TACAGGTTTAGAGGACACTCATTGGCTGACCCTGATGAGCTTCGTGACCC
AGCGGAGAAGGCTCGTTATGCTGCTAGAGATCCAATTACTGCTTTGAAGA
AATACTTGATCGAGAGCAGTCTAGCTAGTGAAGCAGAGCTCAAGGCTATA
GAAAAAAGGATAGATGAAGTGGTTGAGGATGCTGTTGAGTTTGCAGATGA
GAGTGCTCCTCCACCTCGCAGCCAGCTACTTGAGAATGTTTTTGCAGATC
CAAAAGGTTTTGGTATTGGGCCTGATGGGCGTTACAGATGTGAAGATCCC
AAATTTACGGAAGGCACCGCTCATGTCTGAGTCTAACCTTTCTAGGCTAG
ACATTTTTTCTATCTACTTGTACTGGCAATTAGTTCCATGGATCCCTATT
TACACTTGCCGCCCAGTATGTAGGGCCTTTAAGCAGCAGCA
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