CX289896

Overview
NameCX289896
Unique NameCX289896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289896 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.477e-22
Identity = 56/126 (44.44%), Postives = 80/126 (63.49%), Query Frame = 1
Query:   13 RADTQNGIKLTLSPYNNST-IVRESTDLNLRFSVLLSGRD-YCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGTYKIVHCPSVCESCVKLCNNVGR-SFEDGVRRLVL 381
            R+D  NG  +  S  ++   +VR STD+N+ F  +   RD  C+   +W++DNYD ++GKW++TT G+ G PG  TL +WFK+EK G     YK   CPSVC+SC  LC+++GR S +DG  RL L
Sbjct:   77 RSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPI---RDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVL--GYKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRLAL 197          
BLAST of CX289896 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20
Identity = 51/133 (38.35%), Postives = 76/133 (57.14%), Query Frame = 1
Query:   10 TRADTQNGIKLTLSPYN-NSTIVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGTYKIVHCPSVCESCVKLCNNVGRSFEDGVRRLVLVRDDEPAF 405
            TR +  +   L   P N    +VR STDLN+ FS  +  R       +W++D YD ++G++F+T GG+ G+PG ET+ +WFK+E+     G YK+V CP+VC SC   C +VG   +   RR + + D   AF
Sbjct:   83 TRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFSAFMPCR--WTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCG-SGFYKLVFCPTVCGSCKVKCGDVGIYIDQKGRRRLALSDKPFAF 212          
BLAST of CX289896 vs. ExPASy Swiss-Prot
Match: LSPI_CARPA (Latex serine proteinase inhibitor OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.646e-13
Identity = 47/124 (37.90%), Postives = 67/124 (54.03%), Query Frame = 1
Query:   28 NGIKLTLSPYNN--STIVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGTYKIVHCPSVCESCVKLCNNVGRSFED-GVRRLVLVRD 390
            NG  +  S   N    IV ES DLN++F++ ++    CNE   WKVD +    G W +T GG  G+ G E+  + FK++K G  P +YK   CPS   + +  CNNV   F+   +RRL+L  D
Sbjct:   56 NGEPIIFSAIKNVKDNIVFESVDLNVKFNITIN----CNETTAWKVDRFPGVIG-WTVTLGGEKGYHGFESTHSMFKIKKAG-LPFSYKFHFCPSYPRTRLIPCNNVDIFFDKYRIRRLILTND 173          
The following BLAST results are available for this feature:
BLAST of CX289896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ASP_THECC1.477e-2244.4421 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU8.959e-2038.35Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
LSPI_CARPA3.646e-1337.90Latex serine proteinase inhibitor OS=Carica papaya... [more]
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Properties
Property NameValue
Genbank descriptionC02018C07SK IF1 Citrus clementina cDNA clone C02018C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289896 ID=CX289896; Name=CX289896; organism=Citrus clementina; type=EST; length=665bp
GAATTCGGCACGAGGGCTGATACGCAAAATGGAATCAAATTAACACTGTC
ACCGTATAACAATTCTACAATTGTCCGAGAATCCACTGATCTCAACTTGA
GATTCTCAGTGTTGCTATCTGGACGTGACTATTGTAACGAACAACCGTTG
TGGAAAGTTGATAATTATGACGCGGCATCAGGCAAATGGTTTATAACAAC
CGGGGGACTTGATGGTCACCCTGGAGCTGAAACTTTGCTAAATTGGTTTA
AGCTTGAGAAAATTGGAAATTTTCCAGGTACATACAAAATCGTTCATTGT
CCATCCGTTTGCGAGTCTTGTGTCAAACTCTGCAACAACGTTGGCCGTTC
GTTTGAGGATGGCGTTCGACGTCTGGTTCTGGTTCGTGATGATGAGCCGG
CATTTCCTGTTGTGTTAATTCCCGCTACAGAAAGATCAACGTCTGTGTAA
TCAATGTACCGTAACCAGCTAGCGGTATTATTATTCTAAATAACGGACCA
GGCTAGCTGCTCTTTAATCTCTAGGATTAAAATTATGAATAAGAAACCCT
GTGATCCTTTCGGGGTTAATAAATTCTACTGTTGGTGTATACCTTAAAAT
GTAATTTCTTGTTGAACATGAAAATCGAAATCAAGTGTTCTTTGTTTTAA
AAAAAAAAAAAAAAA
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