CX289970

Overview
NameCX289970
Unique NameCX289970
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289970 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.896e-32
Identity = 67/71 (94.37%), Postives = 70/71 (98.59%), Query Frame = 2
Query:  173 YRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQER 385
            YRADD+YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRS+ VDDKV+KAQIWDTAGQER
Sbjct:    4 YRADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQER 74          
BLAST of CX289970 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.934e-31
Identity = 65/71 (91.55%), Postives = 71/71 (100.00%), Query Frame = 2
Query:  173 YRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQER 385
            YRA+DDYDYLFK+VLIGDSGVGKSNLLSRF++NEF+LESKSTIGVEFATRSIRVDDK+VKAQIWDTAGQER
Sbjct:    5 YRAEDDYDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQER 75          
BLAST of CX289970 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 3.298e-31
Identity = 66/71 (92.96%), Postives = 70/71 (98.59%), Query Frame = 2
Query:  173 YRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQER 385
            YRA+DDYDYLFKVVLIGDSGVGKSNLLSRFT+NEFSLESKSTIGVEFATRS++VD KVVKAQIWDTAGQER
Sbjct:    5 YRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQER 75          
BLAST of CX289970 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.637e-30
Identity = 64/71 (90.14%), Postives = 69/71 (97.18%), Query Frame = 2
Query:  173 YRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQER 385
            YR +DDYDYLFKVVLIGDSGVGKSNLLSRFTKNEF+LESKSTIGVEFATR+++VD KVVKAQIWDTAGQER
Sbjct:    4 YRVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQER 74          
BLAST of CX289970 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.138e-30
Identity = 62/71 (87.32%), Postives = 70/71 (98.59%), Query Frame = 2
Query:  173 YRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQER 385
            YRADD+YDYLFK+VLIGDSGVGKSNLLSRFTKNEF+LESKSTIGVEFAT+S+ +D+KV+KAQIWDTAGQER
Sbjct:    4 YRADDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQER 74          
BLAST of CX289970 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.221e-30
Identity = 63/72 (87.50%), Postives = 69/72 (95.83%), Query Frame = 2
Query:  170 AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQER 385
            +++ DDDYDYLFKVVLIGDSGVGKSNLLSRFT+NEFSLESKSTIGVEFATRSI+VD K +KAQIWDTAGQER
Sbjct:    2 SHKPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 73          
BLAST of CX289970 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.810e-29
Identity = 60/71 (84.51%), Postives = 69/71 (97.18%), Query Frame = 2
Query:  173 YRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQER 385
            Y+ADD+YDYLFK+VLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFAT+S+ +D KV+KAQIWDTAGQER
Sbjct:    4 YKADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQER 74          
BLAST of CX289970 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.810e-29
Identity = 62/71 (87.32%), Postives = 68/71 (95.77%), Query Frame = 2
Query:  173 YRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQER 385
            YR DD+YDYLFK+VLIGDSGVGKSNLLSRFTKNEF+LESKSTIGVEFAT+++ VD KVVKAQIWDTAGQER
Sbjct:    4 YRTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQER 74          
BLAST of CX289970 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.266e-29
Identity = 61/71 (85.92%), Postives = 69/71 (97.18%), Query Frame = 2
Query:  173 YRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQER 385
            YRAD++YDYLFK+VLIGDSGVGKSNLLSRFTKNEF+LESKSTIGVEFAT++ +V+ KVVKAQIWDTAGQER
Sbjct:    4 YRADEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQER 74          
BLAST of CX289970 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 126.716 bits (317), Expect = 1.173e-28
Identity = 61/68 (89.71%), Postives = 66/68 (97.06%), Query Frame = 2
Query:  182 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQER 385
            DD+YDYLFKVVLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATRSI+VD K +KAQIWDTAGQER
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 72          
The following BLAST results are available for this feature:
BLAST of CX289970 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
RAA1C_ARATH3.896e-3294.37Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RB11B_TOBAC1.934e-3191.55Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RIC2_ORYSJ3.298e-3192.96Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RAA1B_ARATH1.637e-3090.14Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
YPT3_NICPL2.138e-3087.32Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
YPTC6_CHLRE6.221e-3087.50Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RB11E_LOTJA1.810e-2984.51Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RB11D_LOTJA1.810e-2987.32Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RAA1A_ARATH5.266e-2985.92Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
RB11B_RAT1.173e-2889.71Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]

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Properties
Property NameValue
Genbank descriptionC02019A12SK IF1 Citrus clementina cDNA clone C02019A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289970 ID=CX289970; Name=CX289970; organism=Citrus clementina; type=EST; length=702bp
GCGAAAGCCTTAGATTTTCTTCATCTGTTCCCATCATCAACTTCACCTCA
CCTGTCTTGCACACACACTCACACTTATCTCTCTCTCTCTATTGCGTTAA
TTGCATAATACACAATTCAATAAGAGAGGAGGGGAAAAAAAAAGAAGAAA
GAAATTGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACGATTACT
TGTTCAAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCAAATCTG
TTATCTCGATTCACCAAGAACGAATTCAGCCTCGAATCGAAATCCACCAT
CGGCGTCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGGTCGTCA
AGGCTCAGATTTGGGACACCGCCGGCCAAGAACGGTAACCATTTTCATTT
CACCGATCTGTTTATCTGAGATCTGAATGCCATTGATTTTGCTGCGACCT
TGGGATTGGTTAACGGCTTGCCTGCCACATGTTTGATTTATCAACTGATT
GAATTTAGTTTTACATTACATTTACAATAAAATCTTGTTTTCGAGATCTA
ATTCCCTATCAGCAAATCTATGAGTTTTGCGGAACATAACGAAAGTGATA
TTTTAGTTTCACATGCAAATTTGACCTTGTTGGGGTTTGGTGTCTCGAGA
ATATTTGAAACTATGTTTGAGTTTGATTACTTCATTTACGTTCAGATATG
AC
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