CX290054

Overview
NameCX290054
Unique NameCX290054
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290054 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.700e-28
Identity = 63/140 (45.00%), Postives = 87/140 (62.14%), Query Frame = 3
Query:   18 LDSSFNAKLSDFGLSVTAGTQSRN---VKISGTLGYVAPEYLLEGKLTDKSDVYAFGVVLLELLMGRRPVEKMSPTQCQSMVTWAMPQLTDRSKLPNIVDPVIRDTMDLKHLYQVAAVAVLCIQPEPSYRPLITDVLHSL 428
            LD  F+ KLSDFGL+    T  ++    ++ GT GY APEY + G+LT KSDVY+FGVV LEL+ GR+ ++   P   Q++V WA P   DR K   + DP ++     + LYQ  AVA +CIQ + + RPLI DV+ +L
Sbjct:  221 LDEGFHPKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSEMPHGEQNLVAWARPLFNDRRKFIKLADPRLKGRFPTRALYQALAVASMCIQEQAATRPLIADVVTAL 360          
BLAST of CX290054 vs. ExPASy Swiss-Prot
Match: APK2B_ARATH (Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.161e-27
Identity = 68/149 (45.64%), Postives = 91/149 (61.07%), Query Frame = 3
Query:   18 LDSSFNAKLSDFGLSVTAGTQSR---NVKISGTLGYVAPEYLLEGKLTDKSDVYAFGVVLLELLMGRRPVEKMSPTQCQSMVTWAMPQLTDRSKLPNIVDPVIRDTMDLKHLYQVAAVAVLCIQPEPSYRPLITDVLHSLIPLVPTDLG 455
            LD+ FN+KLSDFGL+    T  +   + ++ GT GY APEY+  G+LT KSDVY+FGVVLLELL GRR V+K      QS+V WA P L D+ KL  I+D  +      K  Y  A++A+ C+ P+   RP +++VL  L  L  T  G
Sbjct:  224 LDAEFNSKLSDFGLAKAGPTGDKTHVSTQVMGTHGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDKSKVGMEQSLVDWATPYLGDKRKLFRIMDTRLGGQYPQKGAYTAASLALQCLNPDAKLRPKMSEVLAKLDQLESTKPG 372          
BLAST of CX290054 vs. ExPASy Swiss-Prot
Match: RLCK7_ARATH (Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.822e-27
Identity = 55/140 (39.29%), Postives = 91/140 (65.00%), Query Frame = 3
Query:   18 LDSSFNAKLSDFGLSVTAGTQSR---NVKISGTLGYVAPEYLLEGKLTDKSDVYAFGVVLLELLMGRRPVEKMSPTQCQSMVTWAMPQLTDRSKLPNIVDPVIRDTMDLKHLYQVAAVAVLCIQPEPSYRPLITDVLHSL 428
            L   +  KLSDFGL+    +  +   + ++ GT GY AP+Y + G+LT KSD+Y+FGVVLLEL+ GR+ ++     + Q++V WA P   DR   P +VDP+++    ++ LYQ  A++ +C+Q +P+ RP+++DV+ +L
Sbjct:  238 LGEDYQPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDNTKTRKDQNLVGWARPLFKDRRNFPKMVDPLLQGQYPVRGLYQALAISAMCVQEQPTMRPVVSDVVLAL 377          
BLAST of CX290054 vs. ExPASy Swiss-Prot
Match: Y2197_ARATH (Probable protein kinase At2g41970 OS=Arabidopsis thaliana GN=At2g41970 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.288e-27
Identity = 66/150 (44.00%), Postives = 99/150 (66.00%), Query Frame = 3
Query:   18 LDSSFNAKLSDFGLS-VTAGTQSR--NVKISGTLGYVAPEYLLEGKLTDKSDVYAFGVVLLELLMGRRPVEKMSPTQCQSMVTWAMPQLTDRSKLPNIVDPVIRDTMDLKHLYQVAAVAVLCIQPEPSYRPLITDVLHSLIPLVPTDLGG 458
            L   F AK++DF L+  ++ T +R  + ++ GT GY APEY + G++T KSDVY+FGVVLLELL GR+PV+   P   QS+VTWA P+L++  K+   +DP + +    K + ++AAVA LC+Q E  +RP +T V+ +L PL+ +   G
Sbjct:  212 LFDDFVAKMADFNLTNASSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSE-DKVKQCIDPKLNNDFPPKAVAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNSKPAG 360          
BLAST of CX290054 vs. ExPASy Swiss-Prot
Match: SRF8_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.401e-26
Identity = 64/143 (44.76%), Postives = 84/143 (58.74%), Query Frame = 3
Query:   18 LDSSFNAKLSDFGLSVTAGTQSRNV--KISGTLGYVAPEYLLEGKLTDKSDVYAFGVVLLELLMGRRPVEKMSPTQCQSMVTWAMPQLTDRSKLPNIVDPVIRDTMDLKHLYQVAAVAVLCIQPEPSYRPLITDVLHSLIPLV 440
            LD   N  LSD GL+       R V  ++ G+ GY APE+ L G  T KSDVY FGVV+LELL GR+P++       QS+V WA PQL D   L  +VDP +      K L + A +  LCIQPEP +RP +++V+  L+ LV
Sbjct:  531 LDEELNPHLSDSGLAALTPNTERQVSTQVVGSFGYSAPEFALSGIYTVKSDVYTFGVVMLELLTGRKPLDSSRTRAEQSLVRWATPQLHDIDALSKMVDPSLNGMYPAKSLSRFADIIALCIQPEPEFRPPMSEVVQQLVRLV 673          
BLAST of CX290054 vs. ExPASy Swiss-Prot
Match: APK1A_ARATH (Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.076e-26
Identity = 66/157 (42.04%), Postives = 100/157 (63.69%), Query Frame = 3
Query:   18 LDSSFNAKLSDFGLSVTA--GTQSR-NVKISGTLGYVAPEYLLEGKLTDKSDVYAFGVVLLELLMGRRPVEKMSPTQCQSMVTWAMPQLTDRSKLPNIVDPVIRDTMDLKHLYQVAAVAVLCIQPEPSYRPLITDVLHSL--IPLVPTDLGGSLRVT 473
            LDS +NAKLSDFGL+     G +S  + ++ GT GY APEYL  G LT KSDVY+FGVVLLELL GRR V+K  P+  +++V WA P L ++ K+  ++D  ++D   ++   +VA +++ C+  E   RP +++V+  L  I  +   +GG++  T
Sbjct:  211 LDSEYNAKLSDFGLAKDGPIGDKSHVSTRVMGTHGYAAPEYLATGHLTTKSDVYSFGVVLLELLSGRRAVDKNRPSGERNLVEWAKPYLVNKRKIFRVIDNRLQDQYSMEEACKVATLSLRCLTTEIKLRPNMSEVVSHLEHIQSLNAAIGGNMDKT 367          
BLAST of CX290054 vs. ExPASy Swiss-Prot
Match: APK1B_ARATH (Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 5.323e-26
Identity = 63/140 (45.00%), Postives = 88/140 (62.86%), Query Frame = 3
Query:   18 LDSSFNAKLSDFGLSVTAGTQSRN---VKISGTLGYVAPEYLLEGKLTDKSDVYAFGVVLLELLMGRRPVEKMSPTQCQSMVTWAMPQLTDRSKLPNIVDPVIRDTMDLKHLYQVAAVAVLCIQPEPSYRPLITDVLHSL 428
            LDS +NAKLSDFGL+    T  ++    +I GT GY APEYL  G LT KSDVY++GVVLLE+L GRR V+K  P   Q +V WA P L ++ KL  ++D  ++D   ++   +VA +A+ C+  E   RP + +V+  L
Sbjct:  212 LDSEYNAKLSDFGLAKDGPTGDKSHVSTRIMGTYGYAAPEYLATGHLTTKSDVYSYGVVLLEVLSGRRAVDKNRPPGEQKLVEWARPLLANKRKLFRVIDNRLQDQYSMEEACKVATLALRCLTFEIKLRPNMNEVVSHL 351          
BLAST of CX290054 vs. ExPASy Swiss-Prot
Match: Y3545_ARATH (Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.079e-26
Identity = 65/143 (45.45%), Postives = 90/143 (62.94%), Query Frame = 3
Query:   18 LDSSFNAKLSDFGLSVTA--GTQSR-NVKISGTLGYVAPEYLLEGKLTDKSDVYAFGVVLLELLMGRRPVEKMSPTQCQSMVTWAMPQLTDRSKLPNIVDPVIRDTMDLKHLYQVAAVAVLCIQPEPSYRPLITDVLHSLIPL 437
            LDS FNAKLSDFGL+     G QS  + ++ GT GY APEY+  G L  +SDVY+FGVVLLELL GR+ ++   P + Q++V WA P LT R K+  IVD  +      +   ++A++AV C+  EP  RP +  V+ +L+ L
Sbjct:  205 LDSDFNAKLSDFGLARDGPMGEQSYVSTRVMGTFGYAAPEYVSTGHLNARSDVYSFGVVLLELLCGRQALDHNRPAKEQNLVDWARPYLTSRRKVLLIVDTRLNSQYKPEGAVRLASIAVQCLSFEPKSRPTMDQVVRALVQL 347          
BLAST of CX290054 vs. ExPASy Swiss-Prot
Match: NAK_ARATH (Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.023e-25
Identity = 60/140 (42.86%), Postives = 90/140 (64.29%), Query Frame = 3
Query:   18 LDSSFNAKLSDFGLSVTA--GTQSR-NVKISGTLGYVAPEYLLEGKLTDKSDVYAFGVVLLELLMGRRPVEKMSPTQCQSMVTWAMPQLTDRSKLPNIVDPVIRDTMDLKHLYQVAAVAVLCIQPEPSYRPLITDVLHSL 428
            LDS++NAKLSDFGL+     G  S  + ++ GT GY APEYL  G L+ KSDVY+FGVVLLELL GRR ++K  P    ++V WA P LT++ +L  ++DP ++    L    ++A +A+ CI  +   RP + +++ ++
Sbjct:  211 LDSNYNAKLSDFGLARDGPMGDNSHVSTRVMGTQGYAAPEYLATGHLSVKSDVYSFGVVLLELLSGRRAIDKNQPVGEHNLVDWARPYLTNKRRLLRVMDPRLQGQYSLTRALKIAVLALDCISIDAKSRPTMNEIVKTM 350          
BLAST of CX290054 vs. ExPASy Swiss-Prot
Match: PTI1_SOLLC (Pto-interacting protein 1 OS=Solanum lycopersicum GN=PTI1 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.642e-25
Identity = 63/139 (45.32%), Postives = 91/139 (65.47%), Query Frame = 3
Query:   36 AKLSDFGLSVTA---GTQSRNVKISGTLGYVAPEYLLEGKLTDKSDVYAFGVVLLELLMGRRPVEKMSPTQCQSMVTWAMPQLTDRSKLPNIVDPVIRDTMDLKHLYQVAAVAVLCIQPEPSYRPLITDVLHSLIPLVP 443
            AK++DF LS  A     +  + ++ GT GY APEY + G+L+ KSDVY+FGVVLLELL GR+PV+   P   QS+VTWA P+L++  K+   VD  +      K + ++AAVA LC+Q E  +RP ++ V+ +L PL+P
Sbjct:  212 AKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLSSKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPRLSE-DKVKQCVDARLNTDYPPKAIAKMAAVAALCVQYEADFRPNMSIVVKALQPLLP 349          
The following BLAST results are available for this feature:
BLAST of CX290054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PBS1_ARATH9.700e-2845.00Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]
APK2B_ARATH2.161e-2745.64Protein kinase 2B, chloroplastic OS=Arabidopsis th... [more]
RLCK7_ARATH2.822e-2739.29Probable serine/threonine-protein kinase RLCKVII O... [more]
Y2197_ARATH6.288e-2744.00Probable protein kinase At2g41970 OS=Arabidopsis t... [more]
SRF8_ARATH1.401e-2644.76Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsi... [more]
APK1A_ARATH4.076e-2642.04Protein kinase APK1A, chloroplastic OS=Arabidopsis... [more]
APK1B_ARATH5.323e-2645.00Protein kinase APK1B, chloroplastic OS=Arabidopsis... [more]
Y3545_ARATH9.079e-2645.45Probable receptor-like protein kinase At3g55450 OS... [more]
NAK_ARATH2.023e-2542.86Probable serine/threonine-protein kinase NAK OS=Ar... [more]
PTI1_SOLLC2.642e-2545.32Pto-interacting protein 1 OS=Solanum lycopersicum ... [more]

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Properties
Property NameValue
Genbank descriptionC02020A05SK IF1 Citrus clementina cDNA clone C02020A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290054 ID=CX290054; Name=CX290054; organism=Citrus clementina; type=EST; length=602bp
GGAATTCGGCACGAGGGCTGGATTCCAGTTTTAATGCAAAGCTTTCAGAT
TTTGGCCTTTCTGTGACTGCTGGAACCCAGAGTAGGAATGTTAAGATCTC
TGGAACTCTGGGTTATGTTGCCCCGGAGTACCTATTAGAAGGAAAACTAA
CTGATAAAAGTGATGTATATGCTTTCGGAGTTGTATTGCTGGAACTTTTG
ATGGGGAGAAGGCCTGTGGAAAAGATGTCACCAACTCAATGTCAATCAAT
GGTCACATGGGCCATGCCTCAGCTCACCGATAGATCAAAGCTTCCAAACA
TTGTGGATCCAGTAATTAGAGACACAATGGATTTAAAGCACTTATACCAG
GTAGCCGCTGTGGCAGTGCTATGTATACAACCTGAACCAAGTTATAGGCC
ATTGATAACCGACGTTCTGCATTCCCTCATTCCTCTTGTACCTACCGACC
TTGGAGGGTCACTCCGAGTGACCTAACCACAAATGCTTGGTTTGTAAATT
TGCCCAGCATGTCAGCTAGCATCAAATGTCTGGCTTATTACTGGTTTCCT
CAAGTGCCTGATCATTCTTTTAGGACAACAGTTTCCTTCAGGGAATTTAG
AT
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