CX290058

Overview
NameCX290058
Unique NameCX290058
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290058 vs. ExPASy Swiss-Prot
Match: IF5Z_ARATH (Probable eukaryotic translation initiation factor 5-2 OS=Arabidopsis thaliana GN=At1g77840 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.746e-37
Identity = 82/140 (58.57%), Postives = 101/140 (72.14%), Query Frame = 2
Query:    2 EGASASQFKSFLGSLSGTAQ-VMDALFVALFDGIEKGFAKEVTKKKNYLAAAT--QEEGSQMVLLHSLESFCGK-ARPXXXXXXXXXXXXXYDNDLLEEEFILDWYQKGLGGANKNSQVWKNAKPVIEWLQNAESETEED 409
            +G+  S  KSF+ SLS   Q +MDALF ALFDG+ KGFAKEVTKKKNYLAAA   QE+GSQM LL+S+ +FCGK                 YD D++EEE +LDWY+KGL GA+K+S VWKN KP +EWLQ+AESE+EE+
Sbjct:  297 KGSPISALKSFISSLSEPPQDIMDALFNALFDGVGKGFAKEVTKKKNYLAAAATMQEDGSQMHLLNSIGTFCGKNGNEEALKEVALVLKALYDQDIIEEEVVLDWYEKGLTGADKSSPVWKNVKPFVEWLQSAESESEEE 436          
BLAST of CX290058 vs. ExPASy Swiss-Prot
Match: IF5_PHAVU (Eukaryotic translation initiation factor 5 OS=Phaseolus vulgaris GN=EIF5 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.171e-33
Identity = 74/137 (54.01%), Postives = 92/137 (67.15%), Query Frame = 2
Query:    2 EGASASQFKSFLGSLSGTAQV-MDALFVALFDGIEKGFAKEVTKKKNYLAAATQEEGSQMVLLHSLESFCGKARPXXXXXXXXXXXXXYDNDLLEEEFILDWYQKGLGGANKNSQVWKNAKPVIEWLQNAESETEED 409
            +G  AS+  S L +L   AQ  M AL  ALF+G EKGF +E  KKKNY AAA  EEGSQ++LLH++E FC K                YD D+LEEE I+ WYQKGL G NKNS++WKNA+P I+WLQNAESE++E+
Sbjct:  307 KGFGASELLSHLAALPVPAQEKMSALVEALFEGTEKGFGRETLKKKNYFAAAVAEEGSQILLLHAIEEFCCKPNSNALKEVALVLKTLYDADVLEEEAIVLWYQKGLKGDNKNSKIWKNAQPFIDWLQNAESESDEE 443          
BLAST of CX290058 vs. ExPASy Swiss-Prot
Match: IF5Y_ARATH (Probable eukaryotic translation initiation factor 5-1 OS=Arabidopsis thaliana GN=At1g36730 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.002e-25
Identity = 71/141 (50.35%), Postives = 86/141 (60.99%), Query Frame = 2
Query:    5 GASASQFKSFLGSLSGTAQV-MDALFVALFDGIEKGFAKEVTKKKNYLAAAT--QEEG---SQMVLLHSLESFCGKARPXXXXXXXXXXXXXYDNDLLEEEFILDWYQKGLGGANKNSQVWKNAKPVIEWLQNAESETEED 409
            G+S +Q K+ L S S   Q  MDALF ALF G  KGFAKEV KKK YL A    QEE    +QM LL+ +ESFC KA               YD D+L+E+ I++WY KG+    K+S V KN  P IEWLQNAESE+EE+
Sbjct:  303 GSSPTQLKTALASNSANPQEKMDALFSALFGGTGKGFAKEVIKKKKYLLALMMMQEEAGAPAQMGLLNGIESFCMKASAEAAKEVALVIKGLYDEDILDEDVIVEWYNKGV----KSSPVLKNVTPFIEWLQNAESESEEE 439          
BLAST of CX290058 vs. ExPASy Swiss-Prot
Match: IF5_MAIZE (Eukaryotic translation initiation factor 5 OS=Zea mays GN=EIF5 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.414e-25
Identity = 63/132 (47.73%), Postives = 82/132 (62.12%), Query Frame = 2
Query:   17 SQFKSFLGSLSGTAQ-VMDALFVALFDGIEKGFAKEVTKKKNYLAAATQEEGSQMVLLHSLESFCGKARPXXXXXXXXXXXXXYDNDLLEEEFILDWYQKGLGGANKNSQVWKNAKPVIEWLQNAESETEED 409
            SQ K+ L S +   Q VM+A   ALF G+ KGF KEV K K YLA A  +EG+Q +L+ ++E+F GK  P             YD D+L+EE I+DWY   +  A K+SQV KNAKP +EWLQ+AES+ E D
Sbjct:  319 SQLKAVLASSTLPPQDVMNAPLEALFGGVGKGFTKEVVKNKKYLAVAVPDEGAQTLLVQAIEAFGGKCNPEALKEVPVVLKALYDGDILDEETIVDWYNDAV-AAGKDSQVVKNAKPFVEWLQSAESDEEGD 449          
The following BLAST results are available for this feature:
BLAST of CX290058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
IF5Z_ARATH1.746e-3758.57Probable eukaryotic translation initiation factor ... [more]
IF5_PHAVU1.171e-3354.01Eukaryotic translation initiation factor 5 OS=Phas... [more]
IF5Y_ARATH2.002e-2550.35Probable eukaryotic translation initiation factor ... [more]
IF5_MAIZE3.414e-2547.73Eukaryotic translation initiation factor 5 OS=Zea ... [more]
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Properties
Property NameValue
Genbank descriptionC02020A09SK IF1 Citrus clementina cDNA clone C02020A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290058 ID=CX290058; Name=CX290058; organism=Citrus clementina; type=EST; length=689bp
GGAGGGTGCCTCTGCCAGCCAATTTAAATCCTTTCTGGGATCACTCTCTG
GGACTGCTCAAGTTATGGATGCTTTGTTTGTAGCTCTCTTTGATGGCATT
GAGAAGGGTTTCGCTAAAGAGGTGACCAAAAAGAAGAACTACCTGGCTGC
AGCAACTCAAGAGGAGGGATCACAGATGGTTCTGCTGCACTCTCTTGAGT
CTTTCTGTGGAAAAGCAAGGCCTGCTGCAGTGAAAGAGGTGGCACTGGTT
CTGAAAGCACTGTATGACAATGACTTGTTGGAAGAAGAGTTCATTTTGGA
TTGGTACCAGAAGGGCCTGGGTGGTGCCAATAAAAACTCACAAGTTTGGA
AGAATGCCAAGCCAGTTATCGAGTGGCTCCAGAATGCCGAGTCTGAAACC
GAAGAAGATTGATCGGTGAAATACACACTGGTTCATAAGTATTTGCTATT
TACTATACTAATAGTGGTCCTATAATAAAACCTTAGCCTTTGTGGTCTGT
TGTTACTGGTTTAATGGAGATGTCATGTCAGTAGTTATTAGTGGTAAAAT
CTGTCCTGTTTAGAATAAAATAGTAACTTAGAGCTGCCGTCTCTGTTCCC
GATGTAATTTCATTGATATTGTGTATCAGCTTATTGGGTGTGGTCAGCTG
AGTCTGTGTCAGTTCCATTACGGACATGATGTTGTAATA
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