CX290108

Overview
NameCX290108
Unique NameCX290108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX290108 vs. ExPASy Swiss-Prot
Match: RS22_ARATH (40S ribosomal protein S2-2 OS=Arabidopsis thaliana GN=RPS2B PE=2 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 7.379e-87
Identity = 159/182 (87.36%), Postives = 171/182 (93.96%), Query Frame = 1 
Query:   16 MPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLTPKPINKA-VITE-VDQA 555
            MPVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATF+CL KTYGFLTP+FW+ETRF +SPYQE+TD L+ K ++   VITE  DQA
Sbjct:  103 MPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSATKVITEGEDQA 284
[Close]
BLAST of CX290108 vs. ExPASy Swiss-Prot
Match: RS21_ARATH (40S ribosomal protein S2-1 OS=Arabidopsis thaliana GN=RPS2A PE=2 SV=2)

HSP 1 Score: 320.087 bits (819), Expect = 7.379e-87
Identity = 159/182 (87.36%), Postives = 171/182 (93.96%), Query Frame = 1 
Query:   16 MPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLTPKPINKA-VITE-VDQA 555
            MPVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATF+CL KTYGFLTP+FW+ETRF +SPYQE+TD L+ K ++   VITE  DQA
Sbjct:  103 MPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSATKVITEGEDQA 284
[Close]
BLAST of CX290108 vs. ExPASy Swiss-Prot
Match: RS24_ARATH (40S ribosomal protein S2-4 OS=Arabidopsis thaliana GN=RPS2D PE=2 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 3.662e-86
Identity = 154/180 (85.56%), Postives = 167/180 (92.78%), Query Frame = 1 
Query:   16 MPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLTPKPINKAVITEVDQA 555
            MPVQKQTRAGQRTRFKAF+VVGD++GHVGLGVKCSKEVATAIRGAIILAKLSV+P+RRGYWGNKIG+PHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATF+CL KTYGFLTP+FW+ETRF KSPYQE+TD L   P  K     VD++
Sbjct:   95 MPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSKSPYQEHTDFLLIPPGVKISEVVVDKS 274
[Close]
BLAST of CX290108 vs. ExPASy Swiss-Prot
Match: RS23_ARATH (40S ribosomal protein S2-3 OS=Arabidopsis thaliana GN=RPS2C PE=1 SV=2)

HSP 1 Score: 317.005 bits (811), Expect = 6.247e-86
Identity = 152/170 (89.41%), Postives = 163/170 (95.88%), Query Frame = 1 
Query:   16 MPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLTPKPIN 525
            MPVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATF+CL KTYGFLTP+FW+ETRF +SPYQE+TD L  K ++
Sbjct:  104 MPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLASKALS 273
[Close]
BLAST of CX290108 vs. ExPASy Swiss-Prot
Match: RS2_URECA (40S ribosomal protein S2 OS=Urechis caupo GN=RPS2 PE=2 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.444e-74
Identity = 134/182 (73.63%), Postives = 149/182 (81.87%), Query Frame = 1 
Query:   16 MPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLTPKPINKAVITEVDQAEP 561
            MPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSV VR++PAPRG GIV+A VPKK+L  AGIDD +TS+RG T TLGNF KAT+  +  TY +LTPD WRET F KSPYQEYTD L       AV     + +P
Sbjct:   96 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVLVRLIPAPRGTGIVSAPVPKKLLAMAGIDDCYTSARGQTATLGNFAKATYAAIAATYSYLTPDLWRETVFTKSPYQEYTDYLAKHHGRGAVTAHPTEEKP 277
[Close]
BLAST of CX290108 vs. ExPASy Swiss-Prot
Match: RS2_ICTPU (40S ribosomal protein S2 OS=Ictalurus punctatus GN=rps2 PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 4.200e-74
Identity = 130/164 (79.27%), Postives = 146/164 (89.02%), Query Frame = 1 
Query:   16 MPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLL 507
            MPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS+IPVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L  AGIDD +TS+RG T TLGNF KATF+ + KTY +LTPD W+ET F KSPYQE+TD L
Sbjct:   95 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIIPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 258
[Close]
BLAST of CX290108 vs. ExPASy Swiss-Prot
Match: RS2_RAT (40S ribosomal protein S2 OS=Rattus norvegicus GN=Rps2 PE=1 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 5.485e-74
Identity = 129/164 (78.66%), Postives = 146/164 (89.02%), Query Frame = 1 
Query:   16 MPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLL 507
            MPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L  AGIDD +TS+RG T TLGNF KATF+ + KTY +LTPD W+ET F KSPYQE+TD L
Sbjct:  110 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 273
[Close]
BLAST of CX290108 vs. ExPASy Swiss-Prot
Match: RS2_MOUSE (40S ribosomal protein S2 OS=Mus musculus GN=Rps2 PE=1 SV=3)

HSP 1 Score: 277.33 bits (708), Expect = 5.485e-74
Identity = 129/164 (78.66%), Postives = 146/164 (89.02%), Query Frame = 1 
Query:   16 MPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLL 507
            MPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L  AGIDD +TS+RG T TLGNF KATF+ + KTY +LTPD W+ET F KSPYQE+TD L
Sbjct:  110 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 273
[Close]
BLAST of CX290108 vs. ExPASy Swiss-Prot
Match: RS2_HUMAN (40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2)

HSP 1 Score: 277.33 bits (708), Expect = 5.485e-74
Identity = 129/164 (78.66%), Postives = 146/164 (89.02%), Query Frame = 1 
Query:   16 MPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLL 507
            MPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L  AGIDD +TS+RG T TLGNF KATF+ + KTY +LTPD W+ET F KSPYQE+TD L
Sbjct:  110 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 273
[Close]
BLAST of CX290108 vs. ExPASy Swiss-Prot
Match: RS2_BOVIN (40S ribosomal protein S2 OS=Bos taurus GN=RPS2 PE=2 SV=2)

HSP 1 Score: 277.33 bits (708), Expect = 5.485e-74
Identity = 129/164 (78.66%), Postives = 146/164 (89.02%), Query Frame = 1 
Query:   16 MPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLL 507
            MPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L  AGIDD +TS+RG T TLGNF KATF+ + KTY +LTPD W+ET F KSPYQE+TD L
Sbjct:  110 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 273
The following BLAST results are available for this feature:
BLAST of CX290108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 404
Match NameE-valueIdentityDescription
RS22_ARATH7.379e-8787.3640S ribosomal protein S2-2 OS=Arabidopsis thaliana... [more]
RS21_ARATH7.379e-8787.3640S ribosomal protein S2-1 OS=Arabidopsis thaliana... [more]
RS24_ARATH3.662e-8685.5640S ribosomal protein S2-4 OS=Arabidopsis thaliana... [more]
RS23_ARATH6.247e-8689.4140S ribosomal protein S2-3 OS=Arabidopsis thaliana... [more]
RS2_URECA1.444e-7473.6340S ribosomal protein S2 OS=Urechis caupo GN=RPS2 ... [more]
RS2_ICTPU4.200e-7479.2740S ribosomal protein S2 OS=Ictalurus punctatus GN... [more]
RS2_RAT5.485e-7478.6640S ribosomal protein S2 OS=Rattus norvegicus GN=R... [more]
RS2_MOUSE5.485e-7478.6640S ribosomal protein S2 OS=Mus musculus GN=Rps2 P... [more]
RS2_HUMAN5.485e-7478.6640S ribosomal protein S2 OS=Homo sapiens GN=RPS2 P... [more]
RS2_BOVIN5.485e-7478.6640S ribosomal protein S2 OS=Bos taurus GN=RPS2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC02020E11SK IF1 Citrus clementina cDNA clone C02020E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290108 ID=CX290108; Name=CX290108; organism=Citrus clementina; type=EST; length=713bp
AATTCGGCACTAGGCATGCCGGTGCAGAAACAGACACGTGCCGGTCAGAG
GACGAGGTTCAAGGCCTTCGTCGTCGTCGGTGACACGGACGGCCACGTGG
GTCTTGGCGTTAAGTGCTCCAAAGAGGTTGCCACTGCCATCCGTGGCGCT
ATCATATTGGCGAAGCTGTCGGTGATTCCGGTGAGAAGGGGTTACTGGGG
TAACAAGATCGGGAGGCCACACACCGTGCCGTGTAAGGTGACCGGTAAGT
GTGGCAGTGTCACCGTGAGGATGGTTCCGGCCCCACGTGGTGCCGGAATT
GTGGCGGCTAGGGTTCCAAAGAAGGTGCTGCAGTTTGCTGGTATTGACGA
TGTTTTCACATCTTCTCGTGGGTCGACCAAGACTCTTGGAAACTTTGTCA
AGGCAACCTTTGAGTGTTTGTTGAAGACATATGGCTTCCTTACACCTGAT
TTCTGGAGGGAGACTCGTTTTGTGAAATCTCCATACCAAGAGTACACAGA
TCTTTTGACGCCAAAGCCCATCAACAAGGCAGTCATCACAGAAGTTGATC
AAGCTGAACCTTAAGCTACTTAAGGCTGCATGGAGAGGAGAGCATTAGAA
TGAAAGGCATTTTGGTTGACTTTATAGTATAGCTTTGTTTGTTACAGACT
TTTCTGTTTTTCATTTCTGCAGGACTAGTATGTTGCTATTTGGGGACACA
ATTGTTTGCTTTA
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