CX290116

Overview
NameCX290116
Unique NameCX290116
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290116 vs. ExPASy Swiss-Prot
Match: AMYB_IPOBA (Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4)

HSP 1 Score: 189.889 bits (481), Expect = 1.100e-47
Identity = 98/200 (49.00%), Postives = 132/200 (66.00%), Query Frame = 2
Query:   20 FPKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQIL---RAASLDVD----KQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKD 598
            F + NG + +  G+FFL+WYS  L+ HG+++L  A  +F    V I+ KV+GIHW Y   SHA ELTAG+YN   RDGY PIA+MLARH A  NFTC+EMRD EQP +A  AP++LV+QV S+  K ++ +AGENALPRYD  A+ Q+L   R   ++++     +M   TYLR++  L Q DN+  F  FVKKM+   D
Sbjct:  250 FFRPNGTYKTDMGKFFLTWYSNKLIIHGDQVLEEANKVFVGLRVNIAAKVSGIHWWYNHVSHAAELTAGFYNVAGRDGYRPIARMLARHHATLNFTCLEMRDSEQPAEAKSAPQELVQQVLSSGWKEYIDVAGENALPRYDATAYNQMLLNVRPNGVNLNGPPKLKMSGLTYLRLSDDLLQTDNFELFKKFVKKMHADLD 449          
BLAST of CX290116 vs. ExPASy Swiss-Prot
Match: AMYB_SOYBN (Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3)

HSP 1 Score: 189.119 bits (479), Expect = 1.877e-47
Identity = 100/200 (50.00%), Postives = 128/200 (64.00%), Query Frame = 2
Query:   20 FPKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDK------QMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKD 598
            F K NG + +  G+FFL+WYS  LL+HG++IL  A   F    VK+++KV+GIHW Y   +HA ELTAGYYN   RDGY PIA+ML+RH AI NFTC+EMRD EQP DA   P++LV+QV S   +  + +AGENALPRYD  A+ Q IL A    V+        M   TYLR++  L Q  N+  F  FV KM+  +D
Sbjct:  248 FFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHADQD 447          
BLAST of CX290116 vs. ExPASy Swiss-Prot
Match: AMYB_TRIRP (Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.037e-46
Identity = 97/196 (49.49%), Postives = 129/196 (65.82%), Query Frame = 2
Query:   20 FPKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDK------QMCAFTYLRMNPHLFQPDNWRQFVAFVKKMN 586
            F K NG + +  G+FFL+WYS  LL+HG++IL  A   F    VK+++KV+GIHW Y +++HA ELTAGYYN   RDGY PIA+M++RH  I NFTC+EMRD EQ  DA  AP++LV+QV S   + ++ +AGENAL RYD  A+ Q IL A    V+K      +M   TYLR++  L Q  N+  F  FV KM+
Sbjct:  248 FFKTNGTYLTEKGKFFLTWYSNQLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKAQNHAAELTAGYYNLDDRDGYRPIAKMVSRHHGILNFTCLEMRDSEQSSDAQSAPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKLRMYGVTYLRLSDDLLQESNFEIFKKFVVKMH 443          
BLAST of CX290116 vs. ExPASy Swiss-Prot
Match: AMYB_MEDSA (Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.037e-46
Identity = 98/200 (49.00%), Postives = 131/200 (65.50%), Query Frame = 2
Query:   20 FPKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDK------QMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKD 598
            F K NG + +  G+FFL+WYS  LL+HG++IL  A   F    VK+++KV+GIHW Y + +HA ELTAGYYN   RDGY PIA++++RH AI NFTC+EMRD EQ  DA  +P+KLV+QV S   + ++ +AGENAL RYD  A+ Q IL A    V+K      +M   TYLR++  L Q  N+  F  FV KM+  +D
Sbjct:  248 FFKTNGTYLTEKGKFFLTWYSNQLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKAPNHAAELTAGYYNLDDRDGYRPIAKIVSRHHAILNFTCLEMRDSEQSSDAHSSPQKLVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKLRMYGVTYLRLSDDLMQQSNFDIFKKFVVKMHADQD 447          
BLAST of CX290116 vs. ExPASy Swiss-Prot
Match: AMYB_VIGUN (Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.111e-45
Identity = 96/200 (48.00%), Postives = 128/200 (64.00%), Query Frame = 2
Query:   20 FPKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDK------QMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKD 598
            F K NG + +  G+FFL+WYS  LL+HG+ IL  A   F    V +++KV+GIHW Y +++HA ELTAGYYN   RDGY PIA+M++RH A  NFTC+EMRD EQ  DA   P++LV+QV S   + ++ +AGENAL RYD  A+ Q IL A    V+K      +M   TYLR++  L Q  N+  F  FV KM+  +D
Sbjct:  248 FFKTNGTYLTEKGKFFLTWYSNQLLNHGDEILDEANKAFLGCKVNLAIKVSGIHWWYKAQNHAAELTAGYYNLDDRDGYRPIAKMVSRHHASLNFTCLEMRDSEQSSDAQSGPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKHRMYGVTYLRLSDELLQQSNFDIFKKFVVKMHADQD 447          
BLAST of CX290116 vs. ExPASy Swiss-Prot
Match: AMYB_MAIZE (Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.326e-44
Identity = 100/232 (43.10%), Postives = 137/232 (59.05%), Query Frame = 2
Query:   20 FPKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAA-------SLDVDKQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKDVHRCLEQV--------EREAEHFVHVTQPLVQ 670
            F  +NG + +  G+FFL+WYS  L+ HG++IL  A  +F    V++++KV+GIHW Y   +HA ELTAGYYN   RDGY  IA ML RH A  NFTC EMRD EQ  +A  APE+LV+QV SA  +  + LA ENAL RYD  A+  ILR A       +   + ++  FTYLR++  LFQ  N+  F  FV++M+   D +  ++ V        E   E  + V QP ++
Sbjct:  245 FFADNGTYQTDKGKFFLTWYSNKLIKHGDKILDEANKVFLGCKVQLAIKVSGIHWWYNVPNHAAELTAGYYNLDDRDGYRTIAHMLTRHRASMNFTCAEMRDSEQSSEAKSAPEELVQQVLSAGWREGLNLACENALNRYDATAYNTILRNARPQGINKNGPPEHKLHGFTYLRVSDELFQEQNYTTFKTFVRRMHANLDYNPNVDPVAPLERSKAEIPIEEILEVAQPKLE 476          
BLAST of CX290116 vs. ExPASy Swiss-Prot
Match: AMYB_HORVU (Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.638e-44
Identity = 94/196 (47.96%), Postives = 124/196 (63.27%), Query Frame = 2
Query:   20 FPKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAA-------SLDVDKQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMN 586
            F ++NG + S  G FFL+WYS  L+ HG+RIL  A  +F    V++++K++GIHW Y   SHA ELTAGYYN   RDGY  IA+ML RH A  NFTC EMRD EQ   A+ APE+LV+QV SA  +  + +A ENALPRYD  A+  ILR A       S   + ++  FTYLR++  L +  N+  F  FV +M+
Sbjct:  245 FFRDNGTYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKISGIHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDLEQSSQAMSAPEELVQQVLSAGWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTYLRLSNQLVEGQNYVNFKTFVDRMH 440          
BLAST of CX290116 vs. ExPASy Swiss-Prot
Match: AMYB_HORSP (Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.259e-43
Identity = 93/196 (47.45%), Postives = 124/196 (63.27%), Query Frame = 2
Query:   20 FPKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAA-------SLDVDKQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMN 586
            F ++NG + +  G FFL+WYS  L+ HG+RIL  A  +F    V++++K++GIHW Y   SHA ELTAGYYN   RDGY  IA+ML RH A  NFTC EMRD EQ   A+ APE+LV+QV SA  +  + +A ENALPRYD  A+  ILR A       S   + ++  FTYLR++  L +  N+  F  FV +M+
Sbjct:  245 FFRDNGTYLTEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKISGIHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDSEQSSQAMSAPEELVQQVLSAGWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTYLRLSNQLVEGQNYVNFKTFVDRMH 440          
BLAST of CX290116 vs. ExPASy Swiss-Prot
Match: AMYB_WHEAT (Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.804e-43
Identity = 92/196 (46.94%), Postives = 126/196 (64.29%), Query Frame = 2
Query:   20 FPKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAA-------SLDVDKQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMN 586
            F K+NG + +  G+FFLSWYS  L+ HG++IL  A  +F    V++++K++GIHW Y   +HA ELTAGYYN   RDGY  IA+ML RH A  NFTC EMRD EQ ++A  APE+LV+QV SA  +  + +A ENAL RYD  A+  ILR A       +   + ++  FTYLR++  L +  N+  F  FV+KM+
Sbjct:  245 FFKDNGTYLTEKGKFFLSWYSNKLIKHGDKILDEANKVFLGCRVQLAIKISGIHWWYRVPNHAAELTAGYYNLDDRDGYRTIARMLTRHHASMNFTCAEMRDSEQSEEAKSAPEELVQQVLSAGWREGLHVACENALGRYDATAYNTILRNARPKGINKNGPPEHKLFGFTYLRLSNELLEGQNYATFQTFVEKMH 440          
BLAST of CX290116 vs. ExPASy Swiss-Prot
Match: AMYB_ARATH (Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.049e-42
Identity = 89/200 (44.50%), Postives = 125/200 (62.50%), Query Frame = 2
Query:   20 FPKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAASLD-------VDKQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKD 598
            F K++G + S  G+FF++WYS  L+ HG++IL  A  IF    V ++ KV+GIHW Y   SHA ELTAGYYN   RDGY PIA+ML++H  I NFTC+EM+D +   +AL AP++LV++V S   K  + +AGENAL  Y    + QIL  A  +          +M  FTYLR++  +FQ +N+  F   V+KM+  +D
Sbjct:  250 FFKKDGTYVSEKGKFFMTWYSNKLIFHGDQILGEANKIFAGLKVNLAAKVSGIHWLYNHHSHAAELTAGYYNLFKRDGYRPIARMLSKHYGILNFTCLEMKDTDNTAEALSAPQELVQEVLSKAWKEGIEVAGENALETYGAKGYNQILLNARPNGVNPNGKPKLRMYGFTYLRLSDTVFQENNFELFKKLVRKMHADQD 449          
The following BLAST results are available for this feature:
BLAST of CX290116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
AMYB_IPOBA1.100e-4749.00Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4[more]
AMYB_SOYBN1.877e-4750.00Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3[more]
AMYB_TRIRP6.037e-4649.49Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1[more]
AMYB_MEDSA6.037e-4649.00Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1[more]
AMYB_VIGUN5.111e-4548.00Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=... [more]
AMYB_MAIZE4.326e-4443.10Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1[more]
AMYB_HORVU9.638e-4447.96Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1[more]
AMYB_HORSP1.259e-4347.45Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV... [more]
AMYB_WHEAT2.804e-4346.94Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=... [more]
AMYB_ARATH4.049e-4244.50Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02020F07SK IF1 Citrus clementina cDNA clone C02020F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290116 ID=CX290116; Name=CX290116; organism=Citrus clementina; type=EST; length=691bp
GGAATTCGGCACGAGGGTTTTTCCGAAAGAAAATGGTGGTTGGTGTAGCC
CTTATGGTGAATTTTTCCTAAGCTGGTATTCGCAGATGCTCTTAGATCAC
GGAGAGAGAATTCTCTCATCTGCCAAGGCAATTTTCGATGCTACAGGTGT
TAAGATCTCGGTTAAGGTTGCAGGAATCCACTGGCACTATGGGTCTAGGT
CCCATGCCCCTGAGCTCACAGCTGGATATTACAATACACGATTCCGTGAT
GGTTACCTCCCTATTGCCCAGATGCTAGCACGACATGGTGCCATATTCAA
CTTTACTTGCATAGAGATGCGTGATCATGAACAACCACAAGATGCCCTTT
GTGCACCTGAGAAGCTAGTCAAGCAAGTGGCTTCAGCAACTCAGAAAGCA
CACGTTCCACTGGCTGGGGAAAATGCGTTGCCACGTTATGATGAATACGC
TCACGAGCAGATCTTGCGAGCAGCATCACTTGATGTAGACAAACAGATGT
GTGCATTCACGTACTTGAGGATGAATCCACATTTATTCCAACCCGATAAT
TGGAGACAGTTTGTGGCATTTGTGAAGAAGATGAATGAAGGGAAGGATGT
TCACCGGTGTTTGGAGCAAGTGGAGCGCGAAGCTGAGCACTTCGTCCATG
TGACCCAGCCATTGGTGCAAGAGGCTGCCGTGGCCCTTATG
back to top