CX290119

Overview
NameCX290119
Unique NameCX290119
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290119 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.350e-58
Identity = 107/119 (89.92%), Postives = 114/119 (95.80%), Query Frame = 2
Query:    2 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 358
            L+DGYS G G+AAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYNKDKAWD  W+FWVGPF GAAIAAFYHQF+LRAGA+KALG
Sbjct:  160 LSDGYSIGTGVAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSLGAAIIYNKDKAWDHHWIFWVGPFAGAAIAAFYHQFVLRAGAIKALG 278          
BLAST of CX290119 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.927e-58
Identity = 108/119 (90.76%), Postives = 111/119 (93.28%), Query Frame = 2
Query:    2 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 358
            LADGYSTG GLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS GAAVIYNK K WDD W+FWVGPFIGAAIAAFYHQF+LRA   K+LG
Sbjct:  161 LADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRASGSKSLG 279          
BLAST of CX290119 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 5.129e-58
Identity = 106/119 (89.08%), Postives = 112/119 (94.12%), Query Frame = 2
Query:    2 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 358
            LA GYS G GL AEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARSLGAAVIYNKDK WDD W+FWVGP +GAAIAAFYHQ+ILRAGA+KALG
Sbjct:  166 LASGYSRGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNKDKPWDDHWIFWVGPLVGAAIAAFYHQYILRAGAIKALG 284          
BLAST of CX290119 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.143e-57
Identity = 104/119 (87.39%), Postives = 112/119 (94.12%), Query Frame = 2
Query:    2 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 358
            LA GYS G GL AEI+GTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARSLGAAV+YNKDK WDD W+FWVGP +GAAIAAFYHQ+ILRAGA+KALG
Sbjct:  168 LASGYSRGAGLGAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVVYNKDKPWDDHWIFWVGPLLGAAIAAFYHQYILRAGAIKALG 286          
BLAST of CX290119 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.949e-57
Identity = 103/119 (86.55%), Postives = 113/119 (94.96%), Query Frame = 2
Query:    2 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 358
            L+DGY+ GVG+ AEIIGTFVLVYTVFSATDPKR+ARDSH+PVLAPLPIGF+VFMVHLATIPITGTGINPARS GAAVIYN  KAWDDQW+FWVGPF+GAAIAAFYHQF+LRAGA+KA G
Sbjct:  160 LSDGYNVGVGVGAEIIGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFSVFMVHLATIPITGTGINPARSFGAAVIYNNQKAWDDQWIFWVGPFVGAAIAAFYHQFVLRAGAMKAYG 278          
BLAST of CX290119 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 1.949e-57
Identity = 106/119 (89.08%), Postives = 111/119 (93.28%), Query Frame = 2
Query:    2 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 358
            LADGY+TG GLAAEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS GAAVIYNK K WDD W+FWVGPFIGAAIAAFYHQF+LRA   K+LG
Sbjct:  159 LADGYNTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRASGSKSLG 277          
BLAST of CX290119 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.546e-57
Identity = 106/119 (89.08%), Postives = 111/119 (93.28%), Query Frame = 2
Query:    2 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 358
            LADGY+ G GL AEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS GAAVIYN +KAWDDQW+FWVGP IGAA AAFYHQFILRA A+KALG
Sbjct:  161 LADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPMIGAAAAAFYHQFILRAAAIKALG 279          
BLAST of CX290119 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.407e-57
Identity = 106/116 (91.38%), Postives = 110/116 (94.83%), Query Frame = 2
Query:    2 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVK 349
            L+DGYS G GLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQW+FWVGP IGAAIAA YHQ++LRA A K
Sbjct:  165 LSDGYSKGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASATK 280          
BLAST of CX290119 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.407e-57
Identity = 106/116 (91.38%), Postives = 110/116 (94.83%), Query Frame = 2
Query:    2 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVK 349
            L+DGYS G GLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQW+FWVGP IGAAIAA YHQ++LRA A K
Sbjct:  166 LSDGYSKGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASATK 281          
BLAST of CX290119 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.650e-56
Identity = 104/119 (87.39%), Postives = 110/119 (92.44%), Query Frame = 2
Query:    2 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 358
            LADGY+TG GLAAEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS GAAVI+NK K WDD W+FWVGPFIGA IAAFYHQF+LRA   K+LG
Sbjct:  159 LADGYNTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKSKPWDDHWIFWVGPFIGATIAAFYHQFVLRASGSKSLG 277          
The following BLAST results are available for this feature:
BLAST of CX290119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
PIP25_ARATH1.350e-5889.92Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]
PIP21_ARATH3.927e-5890.76Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
PIP21_MAIZE5.129e-5889.08Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP22_MAIZE1.143e-5787.39Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP26_ARATH1.949e-5786.55Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
PIP22_ARATH1.949e-5789.08Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
PIP24_ARATH2.546e-5789.08Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP24_MAIZE7.407e-5791.38Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP23_MAIZE7.407e-5791.38Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]
PIP23_ARATH1.650e-5687.39Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02020F10SK IF1 Citrus clementina cDNA clone C02020F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290119 ID=CX290119; Name=CX290119; organism=Citrus clementina; type=EST; length=683bp
GCTGGCCGATGGGTACAGCACAGGCGTTGGATTGGCCGCCGAGATCATCG
GCACCTTTGTGTTGGTTTACACTGTCTTCTCGGCCACTGATCCCAAGAGA
AGCGCCAGAGACTCCCATGTCCCCGTTTTGGCACCGCTCCCCATTGGATT
TGCTGTGTTCATGGTACACTTGGCCACAATCCCAATCACTGGCACTGGCA
TTAACCCAGCAAGGAGTCTCGGGGCCGCTGTTATTTACAACAAGGACAAG
GCTTGGGATGATCAATGGCTCTTCTGGGTTGGACCCTTCATCGGTGCAGC
AATTGCGGCTTTCTACCACCAATTCATCTTGAGAGCTGGAGCTGTCAAGG
CTCTTGGTTCATTCAGGAGCCAATCCCGTGTCTGATTTTAGTTTCGACAA
GTGGATTATCCACATCTTCATGGGGTTAATGATTTAAAATTGGAAAGAAA
AAACTGGGAAGGAGTAGAGGTGTGTTAAGTTTCAAAAAGTGAATAATGAG
GGGGGGTGTGATTTGTGCTTTCAAGGAGTTGTAGGCAAAAAGTCTCTTAG
ACAATGAGGGGGCTTGCTTTTTTGTAATCCCCTCTGTTGTTTTCAAGCAC
TTTCCTTAGAATTCACTTCTTCAATGTTTCTGTCTCTTTCTACTTTGTAT
TATTTTCTCCGTATGTGATTATTATTATTATTG
back to top