CX290123

Overview
NameCX290123
Unique NameCX290123
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length637
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290123 vs. ExPASy Swiss-Prot
Match: TOC33_ARATH (Translocase of chloroplast 33, chloroplastic OS=Arabidopsis thaliana GN=TOC33 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.722e-36
Identity = 74/114 (64.91%), Postives = 88/114 (77.19%), Query Frame = 1
Query:   10 LKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLILKWIEGAIKSDIAKDKKP 351
            LKTIR G+ + K EFED A+ V   ENSGRCSKN+ DEK LPNG AWIP LVK ITDVATN+ K+I VDKK++DGS SDDKGK  IP +IG Q+LI+K I+GAI++DI    KP
Sbjct:  183 LKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITDVATNQRKAIHVDKKMVDGSYSDDKGKKLIPLIIGAQYLIVKMIQGAIRNDIKTSGKP 296          
BLAST of CX290123 vs. ExPASy Swiss-Prot
Match: TOC34_PEA (Translocase of chloroplast 34 OS=Pisum sativum GN=TOC34 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.675e-28
Identity = 64/115 (55.65%), Postives = 84/115 (73.04%), Query Frame = 1
Query:   10 LKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQWLIL-KWIEGAIKSDIAKDKKP 351
            L+ +R GA L K + +   +PV L+ENSGRC+KN++DEK+LPNG AWIP LV+ IT+VA NKS+SI VDK LIDG   + +GK+WIP +  LQ+L L K IE  I+ DIA + KP
Sbjct:  186 LQVVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDGPNPNQRGKLWIPLIFALQYLFLAKPIEALIRRDIATETKP 299          
BLAST of CX290123 vs. ExPASy Swiss-Prot
Match: TOC34_ARATH (Translocase of chloroplast 34, chloroplastic OS=Arabidopsis thaliana GN=TOC34 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.673e-26
Identity = 58/119 (48.74%), Postives = 85/119 (71.43%), Query Frame = 1
Query:   10 LKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKILPNGNAWIPTLVKGITDVATNKSKSIVVDKKLIDGSGSDDKGKMWIPAVIGLQW-LILKWIEGAIKSDIAKDKKPY*EL 363
            LK I+ GA L K + + +++PV LVENSGRC KNE+DEKILP G +WIP L   IT+++ N +K+I VDKKL++G   +++GK  IP +   Q+ L++K +  AIKSD++++ KP  EL
Sbjct:  185 LKVIQTGAQLKKQDLQGFSIPVILVENSGRCHKNESDEKILPCGTSWIPNLFNKITEISFNGNKAIHVDKKLVEGPNPNERGKKLIPLMFAFQYLLVMKPLVRAIKSDVSRESKPAWEL 303          
The following BLAST results are available for this feature:
BLAST of CX290123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TOC33_ARATH3.722e-3664.91Translocase of chloroplast 33, chloroplastic OS=Ar... [more]
TOC34_PEA1.675e-2855.65Translocase of chloroplast 34 OS=Pisum sativum GN=... [more]
TOC34_ARATH2.673e-2648.74Translocase of chloroplast 34, chloroplastic OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionC02020G02SK IF1 Citrus clementina cDNA clone C02020G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290123 ID=CX290123; Name=CX290123; organism=Citrus clementina; type=EST; length=637bp
CGAGGCTCTTTAAAGACTATTCGTCTAGGAGCTGGACTCGGGAAACATGA
ATTTGAGGATTATGCTGTTCCAGTCGCTTTGGTTGAGAACAGCGGCAGAT
GCAGTAAAAATGAGAATGATGAGAAGATTCTTCCAAATGGTAATGCGTGG
ATTCCAACCTTGGTTAAAGGGATCACAGATGTTGCGACAAATAAGAGCAA
ATCTATTGTAGTTGACAAGAAGCTGATTGACGGATCTGGCTCTGATGATA
AGGGGAAAATGTGGATCCCTGCCGTTATTGGGCTTCAGTGGCTCATCCTG
AAATGGATTGAAGGAGCAATAAAAAGTGATATTGCAAAGGATAAGAAGCC
TTACTGAGAACTGCATGTATTGATCTCGCCAATTTTCAGTCGTAATCGTC
ATCTTATGGTTCTTTATTGAGCTGCTTCTGAATATTTTGTTTATTGTATT
TATTAGTTCTGCATTATGCGGATATTAGTTATAGAGTCTGTAACAGTTCC
TATCGGCTACGCGCTGAACAAACAGGAAAGCTATAAGTCATTAAGTTGGA
TGTCAGATAATAGAGATTTGTTTGAACCATCTTAGTTTGTGTCAAGATAA
TTGAAATCTTTTTTATTTTAAAAAAAAAAAAAAAAAA
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