CX290125

Overview
NameCX290125
Unique NameCX290125
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX290125 vs. ExPASy Swiss-Prot
Match: GLNA1_VITVI (Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 6.683e-66
Identity = 118/124 (95.16%), Postives = 120/124 (96.77%), Query Frame = -3 
Query:  268 AFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 639
            +FDPKPIQGDWNGAGAH NYSTKSMRNDGGFEVIKKAIEKLGLRH EHIAAYGEGNERRLTG+HETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  233 SFDPKPIQGDWNGAGAHTNYSTKSMRNDGGFEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
[Close]
BLAST of CX290125 vs. ExPASy Swiss-Prot
Match: GLNA2_VITVI (Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.140e-65
Identity = 116/124 (93.55%), Postives = 121/124 (97.58%), Query Frame = -3 
Query:  268 AFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 639
            +FDPKPIQGDWNGAGAH NYSTKSMRNDGG+E+IKKAIEKLGLRH EHIAAYGEGNERRLTG+HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAE+TILWKP
Sbjct:  233 SFDPKPIQGDWNGAGAHTNYSTKSMRNDGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAESTILWKP 356
[Close]
BLAST of CX290125 vs. ExPASy Swiss-Prot
Match: GLNA1_ALNGL (Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.945e-65
Identity = 115/124 (92.74%), Postives = 121/124 (97.58%), Query Frame = -3 
Query:  268 AFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 639
            + DPKPIQGDWNGAGAH NYSTKSMRN+GG+E+IKKAIEKLGLRH EHIAAYGEGNERRLTG+HETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETT+LWKP
Sbjct:  233 SLDPKPIQGDWNGAGAHTNYSTKSMRNNGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTLLWKP 356
[Close]
BLAST of CX290125 vs. ExPASy Swiss-Prot
Match: GLNA1_LOTJA (Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 4.790e-64
Identity = 113/124 (91.13%), Postives = 120/124 (96.77%), Query Frame = -3 
Query:  268 AFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 639
            +FDPKPI+GDWNGAGAH NYSTK+MR DGG+EVIKKAI+KLGLRH EHIAAYGEGNERRLTG+HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  233 SFDPKPIKGDWNGAGAHTNYSTKTMREDGGYEVIKKAIDKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356
[Close]
BLAST of CX290125 vs. ExPASy Swiss-Prot
Match: GLNA3_MEDSA (Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 8.170e-64
Identity = 111/124 (89.52%), Postives = 118/124 (95.16%), Query Frame = -3 
Query:  268 AFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 639
            +FDPKPI GDWNGAGAH NYSTKSMR DGG+E+IKKAIEKLGLRH EHIAAYGEGNERRLTGKHET DINTF WGVANRGAS+RVGRDTEK+GKGYFEDRRP+SNMDPYVVTSMIAETT+LWKP
Sbjct:  233 SFDPKPIPGDWNGAGAHTNYSTKSMREDGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETTDINTFSWGVANRGASVRVGRDTEKDGKGYFEDRRPSSNMDPYVVTSMIAETTLLWKP 356
[Close]
BLAST of CX290125 vs. ExPASy Swiss-Prot
Match: GLNA2_PHAVU (Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.820e-63
Identity = 111/124 (89.52%), Postives = 120/124 (96.77%), Query Frame = -3 
Query:  268 AFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 639
            +FDPKPI GDWNGAGAH+NYSTKSMR +GG+EVIKKAIEKLGLRH EHIAAYG+GNERRLTG+HETADINTF WGVANRG+S+RVGRDTEK+GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  233 SFDPKPIPGDWNGAGAHSNYSTKSMREEGGYEVIKKAIEKLGLRHKEHIAAYGKGNERRLTGRHETADINTFSWGVANRGSSVRVGRDTEKQGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
[Close]
BLAST of CX290125 vs. ExPASy Swiss-Prot
Match: GLNA_VIGAC (Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.055e-63
Identity = 112/124 (90.32%), Postives = 118/124 (95.16%), Query Frame = -3 
Query:  268 AFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 639
            +FDPKPI+GDWNGAGAH NYSTK+MRNDGG+EVIK AIEKLG RH EHIAAYGEGNERRLTG+HETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  233 SFDPKPIKGDWNGAGAHTNYSTKTMRNDGGYEVIKSAIEKLGKRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356
[Close]
BLAST of CX290125 vs. ExPASy Swiss-Prot
Match: GLNA_PINSY (Glutamine synthetase cytosolic isozyme OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.296e-63
Identity = 110/124 (88.71%), Postives = 118/124 (95.16%), Query Frame = -3 
Query:  268 AFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 639
            +FDPKPI+GDWNGAG H NYSTKSMR +GGFEVIKKAIEKL LRH EHI+AYGEGNERRLTG+HETAD+NTF WGVANRGAS+RVGRDTEKEGKGYFEDRRPASNMDPY+VTSMIAETTILWKP
Sbjct:  234 SFDPKPIEGDWNGAGCHTNYSTKSMRKEGGFEVIKKAIEKLKLRHKEHISAYGEGNERRLTGRHETADMNTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWKP 357
[Close]
BLAST of CX290125 vs. ExPASy Swiss-Prot
Match: GLNA3_PHAVU (Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=Gln-gamma PE=2 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 6.916e-63
Identity = 113/124 (91.13%), Postives = 117/124 (94.35%), Query Frame = -3 
Query:  268 AFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 639
            +FDPKPIQGDWNGAGAH NYSTKSMRNDGG+EVIKKAI KL  RH EHIAAYGEGNERRLTGKHETAD+NTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIAETT+LWKP
Sbjct:  233 SFDPKPIQGDWNGAGAHTNYSTKSMRNDGGYEVIKKAITKLEKRHKEHIAAYGEGNERRLTGKHETADMNTFIWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTLLWKP 356
[Close]
BLAST of CX290125 vs. ExPASy Swiss-Prot
Match: GLNA2_SOYBN (Glutamine synthetase cytosolic isozyme 2 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 6.916e-63
Identity = 113/124 (91.13%), Postives = 117/124 (94.35%), Query Frame = -3 
Query:  268 AFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 639
            +FDPKPIQGDWNGAGAH NYSTKSMRNDGG+EVIKKAI KL  RH EHIAAYGEGNERRLTG+HETAD+NTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  233 SFDPKPIQGDWNGAGAHTNYSTKSMRNDGGYEVIKKAIAKLEKRHKEHIAAYGEGNERRLTGRHETADMNTFVWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
The following BLAST results are available for this feature:
BLAST of CX290125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA1_VITVI6.683e-6695.16Glutamine synthetase cytosolic isozyme 1 OS=Vitis ... [more]
GLNA2_VITVI1.140e-6593.55Glutamine synthetase cytosolic isozyme 2 OS=Vitis ... [more]
GLNA1_ALNGL1.945e-6592.74Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE... [more]
GLNA1_LOTJA4.790e-6491.13Glutamine synthetase cytosolic isozyme OS=Lotus ja... [more]
GLNA3_MEDSA8.170e-6489.52Glutamine synthetase nodule isozyme OS=Medicago sa... [more]
GLNA2_PHAVU1.820e-6389.52Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE... [more]
GLNA_VIGAC4.055e-6390.32Glutamine synthetase nodule isozyme OS=Vigna aconi... [more]
GLNA_PINSY5.296e-6388.71Glutamine synthetase cytosolic isozyme OS=Pinus sy... [more]
GLNA3_PHAVU6.916e-6391.13Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=... [more]
GLNA2_SOYBN6.916e-6391.13Glutamine synthetase cytosolic isozyme 2 OS=Glycin... [more]

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Properties
Property NameValue
Genbank descriptionC02020G04SK IF1 Citrus clementina cDNA clone C02020G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290125 ID=CX290125; Name=CX290125; organism=Citrus clementina; type=EST; length=683bp
GTTTTTTTTTTTTTTTTTTGAACAAAAGGAATTGACCCTTCCATAATGTT
ATTAAATTAAATGTTTACATTATTCAACCCAATAGGACAGCAGGAAGCAA
TGAACCCACTGTTGCAAATACAGGGGCAGAGATTGAAACAAGACAAAAGC
TGAACTACTACTAATAAAGCATCCTTAGCAGAACACAATTCTGTCGTGAA
CTCGTGAATCCTGAGTAAAGCCAGCAGATCAAACAAAATATTTCAAAGGT
TGCTAGAGGAGCATTCATGGCTTCCACAGAATAGTGGTTTCTGCAATCAT
GGAGGTGACAACATATGGATCCATGTTAGAAGCAGGTCTCCTGTCCTCAA
AGTAACCCTTTCCTTCTTTCTCTGTGTCTCGTCCAACACGGATTGATGCC
CCACGGTTAGCAACACCCCATTTGAAAGTGTTGATGTCAGCTGTTTCATG
TTTGCCAGTGAGTCGGCGTTCATTGCCTTCACCATATGCGGCAATGTGCT
CACTGTGCCTCAGTCCAAGTTTCTCAATTGCTTTCTTAATAACCTCAAAG
CCTCCATCGTTCCTCATCGACTTGGTGCTGTAATTTGCGTGAGCACCAGC
TCCATTCCAGTCACCCTGAATTGGCTTGGGATCGAAAGCCTCGTGCCGAA
TTCGGCACGAGGGTTGCCTCACATTCCCCGCCC
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