CX290127

Overview
NameCX290127
Unique NameCX290127
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX290127 vs. ExPASy Swiss-Prot
Match: PIF3_ARATH (Transcription factor PIF3 OS=Arabidopsis thaliana GN=PIF3 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.458e-16
Identity = 41/54 (75.93%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    4 IRHEEELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGFYMPP-MMYPSG 162
            +R  +ELIPNCNKVDKASMLDEAIEYLK+LQLQVQIMSM +G+Y+PP +M+P G
Sbjct:  363 MRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQIMSMASGYYLPPAVMFPPG 416
[Close]
BLAST of CX290127 vs. ExPASy Swiss-Prot
Match: PIF1_ARATH (Transcription factor PIF1 OS=Arabidopsis thaliana GN=PIF1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:   16 EELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGFYMPPMMYP 156
            +ELIP CNK DKASMLDEAIEY+K+LQLQ+Q+MSMG G  M PMMYP
Sbjct:  308 QELIPRCNKSDKASMLDEAIEYMKSLQLQIQMMSMGCG--MMPMMYP 352
[Close]
BLAST of CX290127 vs. ExPASy Swiss-Prot
Match: PIL1_ARATH (Transcription factor PIL1 OS=Arabidopsis thaliana GN=PIL1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.167e-12
Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    4 IRHEEELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGFYMPPMMYPSG 162
            +R  ++L+PNC K DKAS+LDEAI+Y++TLQLQVQ+MSMG G   PP M P G
Sbjct:  249 MRALQDLLPNCYKDDKASLLDEAIKYMRTLQLQVQMMSMGNGLIRPPTMLPMG 301
The following BLAST results are available for this feature:
BLAST of CX290127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PIF3_ARATH3.458e-1675.93Transcription factor PIF3 OS=Arabidopsis thaliana ... [more]
PIF1_ARATH6.103e-1376.60Transcription factor PIF1 OS=Arabidopsis thaliana ... [more]
PIL1_ARATH5.167e-1262.26Transcription factor PIL1 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionC02020G06SK IF1 Citrus clementina cDNA clone C02020G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290127 ID=CX290127; Name=CX290127; organism=Citrus clementina; type=EST; length=659bp
GGAATTCGGCACGAGGAAGAACTCATACCAAACTGCAATAAGGTGGACAA
AGCTTCTATGCTTGATGAGGCCATCGAATATCTGAAGACACTCCAACTTC
AAGTGCAGATTATGTCAATGGGAGCTGGTTTCTATATGCCACCAATGATG
TATCCGTCGGGAATGCAACATATGCATGCAGCTCACATGGCTCATTTCCC
CCCAATGGGTATTGGAATGGGAATGGGTATCGGGTATGGAATGGGTATGC
CTGATATTAATGGTGGCTCTTCTTGTTATCCGATGGTTCAGGTGCCTGCT
ATGCATGGAGCACATTTCCCAGGAACATCAGTTTCAGGGCCCTCTGCTTT
GCAGGGGATGGCAGGATCTAACTTCCAGCTGCTTGGGCTTCCTGCTCAAG
GACATCATATGTCAATGCCACATGCACCTCTAAATCCTTTATCAGGAGGC
CCCATAATGAAGTCAGCAATGGGACTGAATCCCACTGGCATGGTAGGTTC
AATGGATAATACGGATGCAGCTAAAGGCTCAACCTCAAAGGATCTGGTGC
AGAATGTCAACTCCCAAGTAAAGCAAAACACTGGTGCCAAGGGCCCAGTG
GATCAAGCATCGGGCCAGTGCGAAGCAACAAATGAAAGTTCTGCAGAGCC
AGCTGCGGT
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