CX290134

Overview
NameCX290134
Unique NameCX290134
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14288 contig Ccv1_Contig14288:213..945. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290134 vs. ExPASy Swiss-Prot
Match: FBK77_ARATH (F-box/kelch-repeat protein At3g61590 OS=Arabidopsis thaliana GN=At3g61590 PE=1 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 7.716e-88
Identity = 147/224 (65.62%), Postives = 182/224 (81.25%), Query Frame = 1
Query:   19 AYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSN-VLSQKPWYFMFTSSDEPIGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYSALSLS-------VDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMWVTSWKEVLTGWRAGDESIICDGVLYFLIYATGGGAPXNRHGLISFNLSSRSS 666
            ++LPIASIFRAG VC+RW+EIVSSRRFL NFSN  +SQ+PWYFMFT++D+P GYAYDPI+RKWY  +LPCIETSNWF+ASS GLVCFMDND R+++YV NPI+K W+ L EPPG K +DY+A+S S       V+R +  Y+VSIVKSKQV GNFFQW+LSIH+Y S+TM W T   +VL+GWR G+ES+IC+ VLYF+IY+TGG    +RHGLI+ NLSS  S
Sbjct:   53 SFLPIASIFRAGTVCKRWNEIVSSRRFLCNFSNNSVSQRPWYFMFTTTDDPSGYAYDPIIRKWYSFDLPCIETSNWFVASSCGLVCFMDNDCRNKIYVSNPITKQWRTLIEPPGHKSTDYTAMSTSVNRANQAVNRANRSYSVSIVKSKQVPGNFFQWDLSIHLYSSETMTWTTLVNDVLSGWRGGNESVICNNVLYFMIYSTGGS--DHRHGLIASNLSSIGS 274          

HSP 2 Score: 35.039 bits (79), Expect = 7.716e-88
Identity = 13/16 (81.25%), Postives = 16/16 (100.00%), Query Frame = 3
Query:  681 KSFIPVPCALTCGRLM 728
            +SFIP+PC+LTCGRLM
Sbjct:  282 RSFIPMPCSLTCGRLM 297          
BLAST of CX290134 vs. ExPASy Swiss-Prot
Match: FBX6_ARATH (F-box only protein 6 OS=Arabidopsis thaliana GN=FBX6 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.098e-15
Identity = 52/168 (30.95%), Postives = 86/168 (51.19%), Query Frame = 1
Query:   25 LPIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDEPIGYAYDPILRKWYGIELPCIETSNWFI--ASSYGLVCFMDNDSRSELYVCNPISKSWKKLEEPPGLKFSDYS----ALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMW 510
            LP+A+ F+   VCR+W+ ++ S  F   F+ +    PW++  T  +   G  YDP L+KW+   +P +   +  +  AS+ GLVCF+D   R+  YV NP++KS+++L   P   F  +S     ++L+ +  SH Y V  V            E    +YDS + +W
Sbjct:  132 LPMATFFQFRAVCRKWNALIDSDSFSRCFTELPQTIPWFYTITHENVNSGQVYDPSLKKWHHPIIPALPKKSIVLPMASAGGLVCFLDIGHRN-FYVSNPLTKSFREL---PARSFKVWSRVAVGMTLNGNSTSHGYKVLWVGC----------EGEYEVYDSLSNVW 285          
BLAST of CX290134 vs. ExPASy Swiss-Prot
Match: FK111_ARATH (F-box/kelch-repeat protein At5g15710 OS=Arabidopsis thaliana GN=At5g15710 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.076e-11
Identity = 51/168 (30.36%), Postives = 76/168 (45.24%), Query Frame = 1
Query:   19 AYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMF--TSSDEPIGYAYDPILRKWYGIELPCIET-SNWFIASSYGLVCFMDNDSRS-ELYVCNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTVSIVKSKQVTGNFFQWELSIHIYDSDTMMW 510
            A +P   IFR   VC++W+ I+    FL   SNV S  P    F   S   P    +   L+ WY I    +   + W + SS GLVCF   D  +    VCNP+ +SW+ L   P + ++    L + VDR    +   ++ +  + G+     L   +YDS T  W
Sbjct:  117 ARVPPFMIFRIRSVCKKWNLILQDNSFLKFHSNVSSHGPCLLTFWKNSPQIPQCSVFSLPLKTWYKIPFTFLPPWAFWLVGSSGGLVCFSGLDGLTFRTLVCNPLMQSWRTL---PSMHYNQQRQLIMVVDRSDKSF--KVIATSDIYGD---KSLPTEVYDSKTDKW 276          
The following BLAST results are available for this feature:
BLAST of CX290134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FBK77_ARATH7.716e-8865.63F-box/kelch-repeat protein At3g61590 OS=Arabidopsi... [more]
FBX6_ARATH6.098e-1530.95F-box only protein 6 OS=Arabidopsis thaliana GN=FB... [more]
FK111_ARATH1.076e-1130.36F-box/kelch-repeat protein At5g15710 OS=Arabidopsi... [more]
back to top
Properties
Property NameValue
Genbank descriptionC02020H01SK IF1 Citrus clementina cDNA clone C02020H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290134 ID=CX290134; Name=CX290134; organism=Citrus clementina; type=EST; length=732bp
AGGAATTCGGCACGAGGAGCTTATCTCCCAATAGCTAGCATATTTAGAGC
AGGCTGCGTGTGCAGAAGATGGCATGAGATTGTCAGTTCAAGAAGGTTTC
TGTGGAACTTCTCAAATGTCCTATCACAAAAGCCCTGGTATTTTATGTTT
ACAAGCTCTGATGAGCCAATTGGTTATGCTTATGATCCCATCCTTCGAAA
GTGGTATGGTATTGAACTCCCCTGCATTGAGACATCCAATTGGTTCATTG
CTTCATCATATGGTTTGGTTTGCTTCATGGACAATGACAGTAGAAGTGAG
TTATATGTCTGCAACCCTATCTCCAAAAGCTGGAAGAAGCTTGAGGAACC
ACCAGGTTTGAAATTCTCTGATTACAGTGCGCTTTCACTCTCAGTGGACA
GAGTATCACATCGCTATACTGTCTCAATTGTGAAGTCTAAGCAAGTCACG
GGGAATTTTTTTCAGTGGGAGCTTTCAATCCATATTTATGATTCAGATAC
AATGATGTGGGTGACCTCCTGGAAAGAGGTGCTGACGGGATGGAGAGCTG
GAGATGAGAGTATTATCTGTGATGGGGTTCTGTATTTTCTGATTTATGCA
ACTGGGGGTGGTGCACCAGANAATCGTCATGGCCTGATCTCGTTTAATCT
TTCTAGCCGATCATCCCATGCTCTGCTGATAAAAGTTTTATCCCAGTACC
TTGTGCTCTGACTTGCGGGCGCCTAATGACCT
back to top