CX290152

Overview
NameCX290152
Unique NameCX290152
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9515 contig Ccv1_Contig9515:556..1072. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX290152 vs. ExPASy Swiss-Prot
Match: TM111_PONAB (Transmembrane protein 111 OS=Pongo abelii GN=TMEM111 PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 2.554e-14
Identity = 41/89 (46.07%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:    1 TVDVSYVSSRSWYFLNLFGLRGLFSLILGEENATDDTQRMM-QMSGFGF----DPSKSLGAEKDSLDIIQHEWALPKFEQRAETVLKDL 252
            T+D S+VSS SWYFLN+FGLR ++SLILG++NA D ++ M  QM+G       D +K+   E ++L++  H+WAL   E+  E + KDL
Sbjct:  160 TLDASWVSSASWYFLNVFGLRSIYSLILGQDNAADQSRMMQEQMTGAAMAMPADTNKAFKTEWEALELTDHQWALDDVEE--ELMAKDL 246
[Close]
BLAST of CX290152 vs. ExPASy Swiss-Prot
Match: TM111_HUMAN (Transmembrane protein 111 OS=Homo sapiens GN=TMEM111 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 2.554e-14
Identity = 41/89 (46.07%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:    1 TVDVSYVSSRSWYFLNLFGLRGLFSLILGEENATDDTQRMM-QMSGFGF----DPSKSLGAEKDSLDIIQHEWALPKFEQRAETVLKDL 252
            T+D S+VSS SWYFLN+FGLR ++SLILG++NA D ++ M  QM+G       D +K+   E ++L++  H+WAL   E+  E + KDL
Sbjct:  160 TLDASWVSSASWYFLNVFGLRSIYSLILGQDNAADQSRMMQEQMTGAAMAMPADTNKAFKTEWEALELTDHQWALDDVEE--ELMAKDL 246
[Close]
BLAST of CX290152 vs. ExPASy Swiss-Prot
Match: TM111_BOVIN (Transmembrane protein 111 OS=Bos taurus GN=TMEM111 PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 2.554e-14
Identity = 41/89 (46.07%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:    1 TVDVSYVSSRSWYFLNLFGLRGLFSLILGEENATDDTQRMM-QMSGFGF----DPSKSLGAEKDSLDIIQHEWALPKFEQRAETVLKDL 252
            T+D S+VSS SWYFLN+FGLR ++SLILG++NA D ++ M  QM+G       D +K+   E ++L++  H+WAL   E+  E + KDL
Sbjct:  160 TLDASWVSSASWYFLNVFGLRSIYSLILGQDNAADQSRMMQEQMTGAAMAMPADTNKAFKTEWEALELTDHQWALDDVEE--ELMAKDL 246
[Close]
BLAST of CX290152 vs. ExPASy Swiss-Prot
Match: TM111_RAT (Transmembrane protein 111 OS=Rattus norvegicus GN=Tmem111 PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 5.690e-14
Identity = 40/89 (44.94%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:    1 TVDVSYVSSRSWYFLNLFGLRGLFSLILGEENATDDTQRMM-QMSGFGF----DPSKSLGAEKDSLDIIQHEWALPKFEQRAETVLKDL 252
            T+D S+VSS SWYFLN+FGLR ++SLILG++NA D ++ M  QM+G       D +K+   E ++L++  H+WAL   E+  E + +DL
Sbjct:  160 TLDASWVSSASWYFLNVFGLRSIYSLILGQDNAADQSRMMQEQMTGAAMAMPADTNKAFKTEWEALELTDHQWALDDVEE--ELMARDL 246
[Close]
BLAST of CX290152 vs. ExPASy Swiss-Prot
Match: TM111_MOUSE (Transmembrane protein 111 OS=Mus musculus GN=Tmem111 PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 5.690e-14
Identity = 40/89 (44.94%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:    1 TVDVSYVSSRSWYFLNLFGLRGLFSLILGEENATDDTQRMM-QMSGFGF----DPSKSLGAEKDSLDIIQHEWALPKFEQRAETVLKDL 252
            T+D S+VSS SWYFLN+FGLR ++SLILG++NA D ++ M  QM+G       D +K+   E ++L++  H+WAL   E+  E + +DL
Sbjct:  160 TLDASWVSSASWYFLNVFGLRSIYSLILGQDNAADQSRMMQEQMTGAAMAMPADTNKAFKTEWEALELTDHQWALDDVEE--ELMARDL 246
[Close]
BLAST of CX290152 vs. ExPASy Swiss-Prot
Match: TM111_DANRE (Transmembrane protein 111 OS=Danio rerio GN=tmem111 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.268e-13
Identity = 40/89 (44.94%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:    1 TVDVSYVSSRSWYFLNLFGLRGLFSLILGEENATDDTQRMM-QMSGFGF----DPSKSLGAEKDSLDIIQHEWALPKFEQRAETVLKDL 252
            ++D S+VSS SWYFLN+FGLR ++SLILG++N  D ++ M  QMSG       D +K+  AE ++L++  H+WAL   E+  + + KDL
Sbjct:  160 SLDASWVSSASWYFLNVFGLRSMYSLILGQDNGADQSRIMQEQMSGAAMAMPADTNKAFKAEWEALELTDHQWALENVEE--DLMSKDL 246
The following BLAST results are available for this feature:
BLAST of CX290152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TM111_PONAB2.554e-1446.07Transmembrane protein 111 OS=Pongo abelii GN=TMEM1... [more]
TM111_HUMAN2.554e-1446.07Transmembrane protein 111 OS=Homo sapiens GN=TMEM1... [more]
TM111_BOVIN2.554e-1446.07Transmembrane protein 111 OS=Bos taurus GN=TMEM111... [more]
TM111_RAT5.690e-1444.94Transmembrane protein 111 OS=Rattus norvegicus GN=... [more]
TM111_MOUSE5.690e-1444.94Transmembrane protein 111 OS=Mus musculus GN=Tmem1... [more]
TM111_DANRE1.268e-1344.94Transmembrane protein 111 OS=Danio rerio GN=tmem11... [more]
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Properties
Property NameValue
Genbank descriptionC02021A10SK IF1 Citrus clementina cDNA clone C02021A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290152 ID=CX290152; Name=CX290152; organism=Citrus clementina; type=EST; length=517bp
ACTGTTGATGTAAGCTATGTCAGTAGTCGTTCATGGTACTTCCTCAATTT
GTTTGGACTGAGGGGTTTATTTAGCCTCATTCTGGGGGAAGAAAATGCTA
CTGATGATACTCAGCGTATGATGCAAATGAGTGGGTTTGGCTTTGACCCA
AGCAAGAGCTTGGGTGCTGAGAAAGACAGTCTGGACATAATTCAGCATGA
ATGGGCCTTACCAAAATTTGAGCAGCGTGCTGAAACAGTATTGAAAGATC
TTGTCGGTTGAACAATGGTGATCTGTTGTTATTTGTTGAATTATAGCATC
GGGAATGGTTCCTTGGTGATTTTCATCCATTTGGTGGACATCTGGGAACG
GCTTTGAAGCCAGCATGACTTTAAATCTTCTATAAACCACTGTTTTAATT
CCCAGTTTTATCTTGTAAGTTAAGCATCATTATTTGAGAAATTTTTGGTT
TTACTAACTAAACATGCGTTGTAGAGTTGGTGGAGTAATTTATGGTTTAA
ATATCATCATTCATCGG
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