CX290182

Overview
NameCX290182
Unique NameCX290182
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX290182 vs. ExPASy Swiss-Prot
Match: NPR1_ARATH (Regulatory protein NPR1 OS=Arabidopsis thaliana GN=NPR1 PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.292e-59
Identity = 117/226 (51.77%), Postives = 163/226 (72.12%), Query Frame = 1 
Query:    1 AMRKEPKIIVSLLTKGARPSDLTLDGRKALQISKRLTKAADYYIPTEEGKTTPKDRLCIEILEQAERRDPLLREASHSFAMPGDDLRMKLLYLENRVGLAKLLFPMEAKVIMDIVHLDGTLEFALDGIKTKKMAGAQRTTVDLNEAPFKMQEEHLNRMKALCRTVELGKRFFPRCSEVLNKIMDADDLNQLACPGNDTPEERLLKRIRYMELQEVVSKAFNEDKEE 678
            AMRKEP++I+SLL KGA  S+ TL+GR AL I+K+ T A +     E+ K + K RLC+EILEQ ++R+ + R+   SFA+  D+L+M LL LENRV LA+ LFP EA+  M+I  + GT EF +  ++  ++ G +RT+  +  APF++ EEH +R+KAL +TVELGKRFFPRCS VL++IM+ +DL QLAC  +DT E+RL K+ RYME+QE + KAF+ED  E
Sbjct:  337 AMRKEPQLILSLLEKGASASEATLEGRTALMIAKQATMAVECNNIPEQCKHSLKGRLCVEILEQEDKREQIPRDVPPSFAVAADELKMTLLDLENRVALAQRLFPTEAQAAMEIAEMKGTCEFIVTSLEPDRLTGTKRTSPGVKIAPFRILEEHQSRLKALSKTVELGKRFFPRCSAVLDQIMNCEDLTQLACGEDDTAEKRLQKKQRYMEIQETLKKAFSEDNLE 562
The following BLAST results are available for this feature:
BLAST of CX290182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NPR1_ARATH2.292e-5951.77Regulatory protein NPR1 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionC02021D06SK IF1 Citrus clementina cDNA clone C02021D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290182 ID=CX290182; Name=CX290182; organism=Citrus clementina; type=EST; length=722bp
GCAATGAGGAAGGAGCCTAAGATAATAGTGTCTCTTTTAACAAAGGGAGC
TCGGCCATCAGATCTTACATTGGATGGTAGAAAAGCACTTCAGATCTCAA
AGCGGCTCACTAAGGCTGCAGATTACTATATTCCCACTGAGGAAGGAAAA
ACAACCCCAAAAGATCGGTTATGCATAGAGATATTGGAACAAGCTGAAAG
AAGAGATCCCTTGCTCAGAGAAGCTTCTCATTCTTTTGCTATGCCTGGTG
ATGATCTTCGGATGAAACTGCTGTACCTTGAAAACAGAGTTGGACTGGCT
AAACTTCTGTTTCCTATGGAAGCAAAAGTCATAATGGATATTGTCCATCT
TGATGGCACTTTGGAGTTTGCATTAGATGGCATCAAAACTAAGAAAATGG
CCGGTGCCCAGAGGACAACTGTGGACTTGAATGAAGCACCTTTCAAAATG
CAAGAGGAGCATCTAAACAGAATGAAAGCACTCTGTAGAACTGTGGAGCT
GGGGAAACGTTTTTTCCCTCGTTGTTCAGAAGTACTTAACAAGATAATGG
ATGCCGATGACTTAAATCAGCTAGCATGTCCGGGGAACGATACTCCAGAA
GAGCGACTCCTGAAACGAATAAGGTACATGGAACTTCAAGAAGTTGTAAG
TAAGGCGTTTAATGAGGATAAAGAAGAGTTTGATAGGTCTGCTATATCAT
CTTCTTCATCATCAAAATCAGT
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