CX290194
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX290194 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1) HSP 1 Score: 292.352 bits (747), Expect = 1.862e-78 Identity = 148/218 (67.89%), Postives = 167/218 (76.61%), Query Frame = 3 Query: 90 TGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLSQ 743 T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD FYPA+DVKKPLVN+RK KPTKL+ASITPGTV I+LAGRF GKRVVFLKQL+SGLLLVTGPFK+NGVPLRRVNQ+YVI TSTK+DISGV+ KFDD+YF +P +KK+DQKTVDA LIKSIEAVP+LK YL ARFSLSQ Sbjct: 7 TPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQ 224
BLAST of CX290194 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1) HSP 1 Score: 290.812 bits (743), Expect = 5.418e-78 Identity = 149/221 (67.42%), Postives = 164/221 (74.21%), Query Frame = 3 Query: 75 APKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSL 737 A K SRNP+L+RG+GK+SRSKMYHKRGLWAIKAKNGGVFPKH FYPADDVKKPL+NKRK KPTKLRASITPGTV I+LAGRF GKRVVFLKQL+SGLLLVTGPFKVNGVPLRRVNQ+YVIATSTKVDISGV++ KFDD+YF VLP +KKDDQK VD L+K+IE VP+LK YL ARFSL Sbjct: 3 AAKQRKPHVSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSL 223
BLAST of CX290194 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1) HSP 1 Score: 289.656 bits (740), Expect = 1.207e-77 Identity = 150/224 (66.96%), Postives = 164/224 (73.21%), Query Frame = 3 Query: 72 MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLSQ 743 M K T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD FYPA+DVKKPL N+R KPTKLRASITPGTV I+LAGRF GKRVVFLKQL SGLLLVTGPFK+NGVPLRRVNQ+YVI TSTKVDISGV L KFDD+YF +P KKDDQK VDA LIK+IEAVP+LKTYL ARFSL Q Sbjct: 1 MPAKQRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQ 224
BLAST of CX290194 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1) HSP 1 Score: 289.271 bits (739), Expect = 1.576e-77 Identity = 149/224 (66.52%), Postives = 163/224 (72.77%), Query Frame = 3 Query: 72 MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLSQ 743 M K T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD FYPA+DVKKPL N+R KP KLRASITPGTV I+LAGRF GKRVVFLKQL SGLLLVTGPFK+NGVPLRRVNQ+YVI TSTKVDISGV L KFDD+YF +P KKDDQK VDA LIK+IEAVP+LKTYL ARFSL Q Sbjct: 1 MPAKQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQ 224
BLAST of CX290194 vs. ExPASy Swiss-Prot
Match: RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3) HSP 1 Score: 151.754 bits (382), Expect = 3.928e-36 Identity = 102/254 (40.16%), Postives = 131/254 (51.57%), Query Frame = 3 Query: 78 PKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLS 740 PK A SRNP L+RG+G++SRS MY ++ L+ K KNGG +YP +DV + L++ K KP +LR+SITPGTV I+L GR GKRVVFLKQL SGLLLVTGP +N VPLRR +Q +VIATSTKVDIS V + K D YF + + +K DQK VD Q++ I+AVP L+ YL ++FSL+ Sbjct: 44 PKKAKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKKQLRKPRHQEGEIFDTEKEKYEI-TEQRKADQKAVDLQILPKIKAVPQLQGYLRSQFSLT 286
BLAST of CX290194 vs. ExPASy Swiss-Prot
Match: RL6_HUMAN (60S ribosomal protein L6 OS=Homo sapiens GN=RPL6 PE=1 SV=3) HSP 1 Score: 149.828 bits (377), Expect = 1.493e-35 Identity = 99/264 (37.50%), Postives = 133/264 (50.38%), Query Frame = 3 Query: 45 RVAESGFNEMAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLS 740 +V + PK SRNP L+RG+G++SRS MY ++ ++ K KNGG +YP +DV + L++ K KP KLRASITPGT+ I+L GR GKRVVFLKQL SGLLLVTGP +N VPLRR +Q +VIATSTK+DIS V + K D YF + + +K DQK VD+Q++ I+A+P L+ YL + F+L+ Sbjct: 26 KVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEI-TEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALT 278
BLAST of CX290194 vs. ExPASy Swiss-Prot
Match: RL6_CHILA (60S ribosomal protein L6 OS=Chinchilla lanigera GN=RPL6 PE=2 SV=3) HSP 1 Score: 149.828 bits (377), Expect = 1.493e-35 Identity = 103/259 (39.77%), Postives = 134/259 (51.74%), Query Frame = 3 Query: 66 NEMAPKAATGRT--SRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLS 740 N A K+ G+ SRNP L+RG+G++SRS MY ++ L+ K KNGG +YP +DV + L++ K KP KLRASITPGTV I+L GR GKRVVFLKQL SGLLLVTGP +N VPLRR +Q +VIATSTK+DIS V + K D YF + + +K DQK VD+Q++ I+AVP L+ YL + F+L+ Sbjct: 31 NVKAKKSKKGQPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYTAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTVLIILTGRHRGKRVVFLKQLASGLLLVTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKERYQI-SEQRKVDQKAVDSQILPKIKAVPQLRGYLRSVFALT 278
BLAST of CX290194 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3) HSP 1 Score: 149.443 bits (376), Expect = 1.949e-35 Identity = 97/245 (39.59%), Postives = 131/245 (53.47%), Query Frame = 3 Query: 102 SRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLS 740 SRNP L+RG+G++SRS MY ++ L+ K KNGG +YP +DV + L++ K KP KLRASITPGT+ I+L GR GKRV+FLKQL+SGLLLVTGP +N VPLRR +Q +VIATSTK+DISGV + + D YF + + +K DQK VD+Q+++ I+AVP L+ YL + F+L+ Sbjct: 41 SRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEI-SEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALT 274
BLAST of CX290194 vs. ExPASy Swiss-Prot
Match: RL6_BOVIN (60S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=2 SV=3) HSP 1 Score: 148.673 bits (374), Expect = 3.325e-35 Identity = 98/245 (40.00%), Postives = 130/245 (53.06%), Query Frame = 3 Query: 102 SRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLS 740 SRNP L+RG+G++SRS MY ++ L+ K KNGG +YP +DV + L++ K KP KLRASITPGT+ I+L GR GKRVVFLKQL SGLLLVTGP +N VPLRR +Q +VIATSTK+DISGV + + D YF + + +K DQK VD+Q+++ I+AVP L+ YL + F+L+ Sbjct: 44 SRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKKLRKPRHQEGEIFDTEREKYEI-TEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALT 277
BLAST of CX290194 vs. ExPASy Swiss-Prot
Match: RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5) HSP 1 Score: 147.132 bits (370), Expect = 9.675e-35 Identity = 99/246 (40.24%), Postives = 129/246 (52.44%), Query Frame = 3 Query: 102 SRNPDLIRGVGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLS 740 SRNP L+RG+G++SRS MY ++ L+ K KNGG +YP +DV + L++ K KP +LR+SITPGTV I+L GR GKRVVFLKQL SGLLLVTGP +N VPLRR +Q +VIATSTKVDIS V + K D YF + + +K DQK VD+Q++ I+AVP L+ YL ++FSL+ Sbjct: 54 SRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLRKPRHQEGEIFDTEKEKYEI-TEQRKADQKAVDSQILPKIKAVPQLQGYLRSQFSLT 288 The following BLAST results are available for this feature:
BLAST of CX290194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX290194 ID=CX290194; Name=CX290194; organism=Citrus clementina; type=EST; length=763bpback to top |