CX290194

Overview
NameCX290194
Unique NameCX290194
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length763
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2912 contig Ccv1_Contig2912:1..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290194 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.862e-78
Identity = 148/218 (67.89%), Postives = 167/218 (76.61%), Query Frame = 3
Query:   90 TGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLSQ 743
            T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD              FYPA+DVKKPLVN+RK KPTKL+ASITPGTV I+LAGRF GKRVVFLKQL+SGLLLVTGPFK+NGVPLRRVNQ+YVI TSTK+DISGV+  KFDD+YF                         +P +KK+DQKTVDA LIKSIEAVP+LK YL ARFSLSQ
Sbjct:    7 TPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQ 224          
BLAST of CX290194 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 5.418e-78
Identity = 149/221 (67.42%), Postives = 164/221 (74.21%), Query Frame = 3
Query:   75 APKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSL 737
            A K      SRNP+L+RG+GK+SRSKMYHKRGLWAIKAKNGGVFPKH               FYPADDVKKPL+NKRK KPTKLRASITPGTV I+LAGRF GKRVVFLKQL+SGLLLVTGPFKVNGVPLRRVNQ+YVIATSTKVDISGV++ KFDD+YF                        VLP +KKDDQK VD  L+K+IE VP+LK YL ARFSL
Sbjct:    3 AAKQRKPHVSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSL 223          
BLAST of CX290194 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.207e-77
Identity = 150/224 (66.96%), Postives = 164/224 (73.21%), Query Frame = 3
Query:   72 MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLSQ 743
            M  K  T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD              FYPA+DVKKPL N+R  KPTKLRASITPGTV I+LAGRF GKRVVFLKQL SGLLLVTGPFK+NGVPLRRVNQ+YVI TSTKVDISGV L KFDD+YF                         +P  KKDDQK VDA LIK+IEAVP+LKTYL ARFSL Q
Sbjct:    1 MPAKQRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQ 224          
BLAST of CX290194 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.576e-77
Identity = 149/224 (66.52%), Postives = 163/224 (72.77%), Query Frame = 3
Query:   72 MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLSQ 743
            M  K  T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD              FYPA+DVKKPL N+R  KP KLRASITPGTV I+LAGRF GKRVVFLKQL SGLLLVTGPFK+NGVPLRRVNQ+YVI TSTKVDISGV L KFDD+YF                         +P  KKDDQK VDA LIK+IEAVP+LKTYL ARFSL Q
Sbjct:    1 MPAKQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQ 224          
BLAST of CX290194 vs. ExPASy Swiss-Prot
Match: RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 3.928e-36
Identity = 102/254 (40.16%), Postives = 131/254 (51.57%), Query Frame = 3
Query:   78 PKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLS 740
            PK A    SRNP L+RG+G++SRS MY ++ L+  K                            KNGG                    +YP +DV + L++  K KP      +LR+SITPGTV I+L GR  GKRVVFLKQL SGLLLVTGP  +N VPLRR +Q +VIATSTKVDIS V + K   D YF                        +  + +K DQK VD Q++  I+AVP L+ YL ++FSL+
Sbjct:   44 PKKAKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKKQLRKPRHQEGEIFDTEKEKYEI-TEQRKADQKAVDLQILPKIKAVPQLQGYLRSQFSLT 286          
BLAST of CX290194 vs. ExPASy Swiss-Prot
Match: RL6_HUMAN (60S ribosomal protein L6 OS=Homo sapiens GN=RPL6 PE=1 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.493e-35
Identity = 99/264 (37.50%), Postives = 133/264 (50.38%), Query Frame = 3
Query:   45 RVAESGFNEMAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLS 740
            +V +       PK      SRNP L+RG+G++SRS MY ++ ++  K                           KNGG                    +YP +DV + L++  K KP      KLRASITPGT+ I+L GR  GKRVVFLKQL SGLLLVTGP  +N VPLRR +Q +VIATSTK+DIS V + K   D YF                        +  + +K DQK VD+Q++  I+A+P L+ YL + F+L+
Sbjct:   26 KVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEI-TEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALT 278          
BLAST of CX290194 vs. ExPASy Swiss-Prot
Match: RL6_CHILA (60S ribosomal protein L6 OS=Chinchilla lanigera GN=RPL6 PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.493e-35
Identity = 103/259 (39.77%), Postives = 134/259 (51.74%), Query Frame = 3
Query:   66 NEMAPKAATGRT--SRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLS 740
            N  A K+  G+   SRNP L+RG+G++SRS MY ++ L+  K                           KNGG                    +YP +DV + L++  K KP      KLRASITPGTV I+L GR  GKRVVFLKQL SGLLLVTGP  +N VPLRR +Q +VIATSTK+DIS V + K   D YF                        +  + +K DQK VD+Q++  I+AVP L+ YL + F+L+
Sbjct:   31 NVKAKKSKKGQPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYTAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTVLIILTGRHRGKRVVFLKQLASGLLLVTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKERYQI-SEQRKVDQKAVDSQILPKIKAVPQLRGYLRSVFALT 278          
BLAST of CX290194 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 1.949e-35
Identity = 97/245 (39.59%), Postives = 131/245 (53.47%), Query Frame = 3
Query:  102 SRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLS 740
            SRNP L+RG+G++SRS MY ++ L+  K                           KNGG                    +YP +DV + L++  K KP      KLRASITPGT+ I+L GR  GKRV+FLKQL+SGLLLVTGP  +N VPLRR +Q +VIATSTK+DISGV + +   D YF                        +  + +K DQK VD+Q+++ I+AVP L+ YL + F+L+
Sbjct:   41 SRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEI-SEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALT 274          
BLAST of CX290194 vs. ExPASy Swiss-Prot
Match: RL6_BOVIN (60S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=2 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 3.325e-35
Identity = 98/245 (40.00%), Postives = 130/245 (53.06%), Query Frame = 3
Query:  102 SRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLS 740
            SRNP L+RG+G++SRS MY ++ L+  K                           KNGG                    +YP +DV + L++  K KP      KLRASITPGT+ I+L GR  GKRVVFLKQL SGLLLVTGP  +N VPLRR +Q +VIATSTK+DISGV + +   D YF                        +  + +K DQK VD+Q+++ I+AVP L+ YL + F+L+
Sbjct:   44 SRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKKLRKPRHQEGEIFDTEREKYEI-TEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALT 277          
BLAST of CX290194 vs. ExPASy Swiss-Prot
Match: RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5)

HSP 1 Score: 147.132 bits (370), Expect = 9.675e-35
Identity = 99/246 (40.24%), Postives = 129/246 (52.44%), Query Frame = 3
Query:  102 SRNPDLIRGVGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLS 740
            SRNP L+RG+G++SRS MY ++ L+  K                            KNGG                    +YP +DV + L++  K KP      +LR+SITPGTV I+L GR  GKRVVFLKQL SGLLLVTGP  +N VPLRR +Q +VIATSTKVDIS V + K   D YF                        +  + +K DQK VD+Q++  I+AVP L+ YL ++FSL+
Sbjct:   54 SRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLRKPRHQEGEIFDTEKEKYEI-TEQRKADQKAVDSQILPKIKAVPQLQGYLRSQFSLT 288          
The following BLAST results are available for this feature:
BLAST of CX290194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RL61_ARATH1.862e-7867.8960S ribosomal protein L6-1 OS=Arabidopsis thaliana... [more]
RL6_MESCR5.418e-7867.4260S ribosomal protein L6 OS=Mesembryanthemum cryst... [more]
RL63_ARATH1.207e-7766.9660S ribosomal protein L6-3 OS=Arabidopsis thaliana... [more]
RL62_ARATH1.576e-7766.5260S ribosomal protein L6-2 OS=Arabidopsis thaliana... [more]
RL6_MOUSE3.928e-3640.1660S ribosomal protein L6 OS=Mus musculus GN=Rpl6 P... [more]
RL6_HUMAN1.493e-3537.5060S ribosomal protein L6 OS=Homo sapiens GN=RPL6 P... [more]
RL6_CHILA1.493e-3539.7760S ribosomal protein L6 OS=Chinchilla lanigera GN... [more]
RL6_PIG1.949e-3539.5960S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=... [more]
RL6_BOVIN3.325e-3540.0060S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=... [more]
RL6_RAT9.675e-3540.2460S ribosomal protein L6 OS=Rattus norvegicus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionC02021E06SK IF1 Citrus clementina cDNA clone C02021E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290194 ID=CX290194; Name=CX290194; organism=Citrus clementina; type=EST; length=763bp
AATTCGGCACGAGGCACTTTCTTTCAAACACTTTTCACCAACAGCGAGTA
GCAGAGAGCGGCTTCAACGAAATGGCGCCGAAAGCTGCGACTGGAAGAAC
GAGCCGTAACCCGGACCTCATACGCGGCGTTGGCAAGTTCTCCAGATCCA
AAATGTACCACAAGCGCGGCCTCTGGGCAATCAAGGCAAAAAACGGCGGC
GTTTTCCCGAAACACGACCCAAAGCCTGCTGCCGCTGAGACGCCAGCCAA
GCCTCCCAAGTTCTACCCAGCTGATGATGTCAAGAAGCCGCTCGTCAACA
AGCGAAAGCACAAACCCACCAAACTCAGAGCGAGTATTACACCTGGGACA
GTGTTTATTCTATTGGCTGGAAGGTTTATGGGGAAGAGAGTTGTTTTTCT
GAAACAACTTACATCTGGGCTGCTTCTTGTTACCGGGCCATTCAAGGTCA
ACGGTGTTCCATTGAGACGGGTAAATCAATCTTATGTGATTGCTACCTCT
ACCAAGGTTGACATTTCTGGAGTCGATCTAGGAAAGTTTGATGACCAATA
CTTTGAAAAGGAAGCCGAGAAGAAGAAAAAGAAGGGGGAAGGAGAATTTT
TTGAGGCAGAGAAGGAGGAAAAGAAAGTGCTCCCAGATGATAAGAAAGAT
GATCAAAAGACTGTTGATGCGCAATTGATAAAATCCATTGAAGCAGTGCC
AGACTTGAAGACCTACTTGTCAGCGAGGTTTTCTCTCAGTCAGGCATGAA
ACCTCATGAGCTT
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